Molecular Biology and Evolution

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The Dazzling Array of Basal Branches in the mtDNA Macrohaplogroup M from India as Inferred from Complete Genomes
Molecular Biology and Evolution - Tập 23 Số 3 - Trang 683-690 - 2006
Chang Sun, Qing‐Peng Kong, Malliya Gounder Palanichamy, Suraksha Agrawal, Hans‐Jürgen Bandelt, Yong‐Gang Yao, Faisal Ali Anwarali Khan, Chunling Zhu, Tapas K. Chaudhuri, Ya‐Ping Zhang
Reconstructing the Evolutionary History of China: A Caveat About Inferences Drawn from Ancient DNA
Molecular Biology and Evolution - Tập 20 Số 2 - Trang 214-219 - 2003
Yong‐Gang Yao, Qing‐Peng Kong, Xiao‐Yong Man, Hans‐Jürgen Bandelt, Ya‐Ping Zhang
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Molecular Biology and Evolution - Tập 32 Số 1 - Trang 268-274 - 2015
Lam Nguyen, Heiko A. Schmidt, Arndt von Haeseler, Bùi Quang Minh
Testing for Ancient Admixture between Closely Related Populations
Molecular Biology and Evolution - Tập 28 Số 8 - Trang 2239-2252 - 2011
Éric Durand, Nick Patterson, David Reich, Montgomery Slatkin
Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
Molecular Biology and Evolution - Tập 38 Số 8 - Trang 3126-3143 - 2021
Matthew J. Christmas, Julia C. Jones, Anna Olsson, Ola Wallerman, Ignas Bunikis, Marcin Kierczak, Valentina Peona, Kaitlyn M. Whitley, Tuuli Larva, Alexander Suh, Nicole E. Miller‐Struttmann, Jennifer C. Geib, Matthew T. Webster
AbstractEvidence is accumulating that gene flow commonly occurs between recently diverged species, despite the existence of barriers to gene flow in their genomes. However, we still know little about what regions of the genome become barriers to gene flow and how such barriers form. Here, we compare genetic differentiation across the genomes of bumblebee species living in sympatry and allopatry to reveal the potential impact of gene flow during species divergence and uncover genetic barrier loci. We first compared the genomes of the alpine bumblebee Bombus sylvicola and a previously unidentified sister species living in sympatry in the Rocky Mountains, revealing prominent islands of elevated genetic divergence in the genome that colocalize with centromeres and regions of low recombination. This same pattern is observed between the genomes of another pair of closely related species living in allopatry (B. bifarius and B. vancouverensis). Strikingly however, the genomic islands exhibit significantly elevated absolute divergence (dXY) in the sympatric, but not the allopatric, comparison indicating that they contain loci that have acted as barriers to historical gene flow in sympatry. Our results suggest that intrinsic barriers to gene flow between species may often accumulate in regions of low recombination and near centromeres through processes such as genetic hitchhiking, and that divergence in these regions is accentuated in the presence of gene flow.
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Molecular Biology and Evolution - Tập 29 Số 8 - Trang 1969-1973 - 2012
Alexei J. Drummond, Marc A. Suchard, Dong Xie, Andrew Rambaut
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Molecular Biology and Evolution - Tập 35 Số 2 - Trang 518-522 - 2018
Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler, Bùi Quang Minh, Lê Sỹ Vinh
Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution.
Molecular Biology and Evolution -
Nancy N. FitzSimmons, Craig Moritz, Stephen S. Moore
Gene Flow and Natural Selection in Oceanic Human Populations Inferred from Genome-Wide SNP Typing
Molecular Biology and Evolution - Tập 25 Số 8 - Trang 1750-1761
Ryosuke Kimura, Jun Ohashi, Yoshitaka Matsumura, Minato Nakazawa, Takashi Inaoka, Ryutaro Ohtsuka, Motoki Osawa, K. Tokunaga
Denisovan Ancestry in East Eurasian and Native American Populations
Molecular Biology and Evolution - Tập 32 Số 10 - Trang 2665-2674 - 2015
Boon‐Peng Hoh, Mark Stoneking
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