G3: Genes, Genomes, Genetics
SCOPUS (2011-2025)SCIE-ISI
2160-1836
2160-1836
Mỹ
Cơ quản chủ quản: Genetics Society of America , OXFORD UNIV PRESS INC
Lĩnh vực:
GeneticsGenetics (clinical)Medicine (miscellaneous)Molecular Biology
Các bài báo tiêu biểu
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
Tập 1 Số 3 - Trang 171-182 - 2011
Abstract Advances in sequencing technology provide special opportunities for
genotyping individuals with speed and thrift, but the lack of software to
automate the calling of tens of thousands of genotypes over hundreds of
individuals has hindered progress. Stacks is a software system that uses
short-read sequence data to identify and genotype loci in a set of individuals
either de novo or by comp...
A New Chicken Genome Assembly Provides Insight into Avian Genome Structure
Tập 7 Số 1 - Trang 109-117 - 2017
Abstract The importance of the Gallus gallus (chicken) as a model organism and
agricultural animal merits a continuation of sequence assembly improvement
efforts. We present a new version of the chicken genome assembly
(Gallus_gallus-5.0; GCA_000002315.3), built from combined long single molecule
sequencing technology, finished BACs, and improved physical maps. In overall
assembled bases, we see a...
Genomic Selection in Multi-environment Crop Trials
Tập 6 Số 5 - Trang 1313-1326 - 2016
AbstractGenomic selection in crop breeding introduces modeling challenges not
found in animal studies. These include the need to accommodate replicate plants
for each line, consider spatial variation in field trials, address line by
environment interactions, and capture nonadditive effects. Here, we propose a
flexible single-stage genomic selection approach that resolves these issues. Our
linear m...
Aspergillus fumigatusMADS-Box Transcription FactorrlmAIs Required for Regulation of the Cell Wall Integrity and Virulence
Tập 6 Số 9 - Trang 2983-3002 - 2016
AbstractThe Cell Wall Integrity (CWI) pathway is the primary signaling cascade
that controls the de novo synthesis of the fungal cell wall, and in
Saccharomyces cerevisiae this event is highly dependent on the RLM1
transcription factor. Here, we investigated the function of RlmA in the fungal
pathogen Aspergillus fumigatus. We show that the ΔrlmA strain exhibits an
altered cell wall organization i...
A Genome Assembly of the Barley ‘Transformation Reference’ Cultivar Golden Promise
Tập 10 Số 6 - Trang 1823-1827 - 2020
AbstractBarley (Hordeum vulgare) is one of the most important crops worldwide
and is also considered a research model for the large-genome small grain
temperate cereals. Despite genomic resources improving all the time, they are
limited for the cv. Golden Promise, the most efficient genotype for genetic
transformation. We have developed a barley cv. Golden Promise reference assembly
integrating Il...
Genetic Linkage Mapping of Economically Important Traits in Cultivated Tetraploid Potato (Solanum tuberosum L.)
Tập 5 Số 11 - Trang 2357-2364 - 2015
Abstract The objective of this study was to construct a single nucleotide
polymorphism (SNP)-based genetic map at the cultivated tetraploid level to
locate quantitative trait loci (QTL) contributing to economically important
traits in potato (Solanum tuberosum L.). The 156 F1 progeny and parents of a
cross (MSL603) between “Jacqueline Lee” and “MSG227-2” were genotyped using the
Infinium 8303 Pota...
Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated Picea glauca
Tập 7 Số 3 - Trang 935-942 - 2017
Abstract Maximization of genetic gain in forest tree breeding programs is
contingent on the accuracy of the predicted breeding values and precision of the
estimated genetic parameters. We investigated the effect of the combined use of
contemporary pedigree information and genomic relatedness estimates on the
accuracy of predicted breeding values and precision of estimated genetic
parameters, as we...
Linking anthocyanin diversity, hue, and genetics in purple corn
Tập 11 Số 2 - 2021
Abstract While maize with anthocyanin-rich pericarp (purple corn) is rising in
popularity as a source of natural colorant for foods and beverages, information
on color range and stability—factors associated with anthocyanin decorations and
compositional profiles—is currently limited. Furthermore, to maximize the
scalability and meet growing demands, both anthocyanin concentrations and
agronomic pe...
A Targeted Capture Linkage Map Anchors the Genome of the Schistosomiasis Vector Snail, Biomphalaria glabrata
Tập 7 Số 7 - Trang 2353-2361 - 2017
Abstract The aquatic planorbid snail Biomphalaria glabrata is one of the most
intensively-studied mollusks due to its role in the transmission of
schistosomiasis. Its 916 Mb genome has recently been sequenced and annotated,
but it remains poorly assembled. Here, we used targeted capture markers to map
over 10,000 B. glabrata scaffolds in a linkage cross of 94 F1 offspring,
generating 24 linkage gr...
Nuclear Gene Variation in Wild Brown Rats
Tập 2 Số 12 - Trang 1661-1664 - 2012
AbstractAlthough the brown rat (Rattus norvegicus) is widely used as a model
mammal throughout biological sciences, little is known about genetic variation
in wild rat populations or the relationship of commonly used inbred strains to
their wild relatives. We sampled wild brown rats from the species’ presumed
ancestral range in NW China and from a derived population in the UK and
estimated nucleot...