BMC Genomic Data
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Polyploidization of Indotyphlops braminus: evidence from isoform-sequencing
BMC Genomic Data - - 2024
Indotyphlops braminus, the only known triploid parthenogenetic snake, is a compelling species for revealing the mechanism of polyploid emergence in vertebrates. In this study, we applied PacBio isoform sequencing technology to generate the first full-length transcriptome of I. braminus, aiming to improve the understanding of the molecular characteristics of this species. A total of 51,849 nonredun...... hiện toàn bộ
Genome-wide characterization of Salmonella Typhimurium genes required for the fitness under iron restriction
BMC Genomic Data - Tập 23 - Trang 1-14 - 2022
Iron is a crucial element for bacterial survival and virulence. During Salmonella infection, the host utilizes a variety of mechanisms to starve the pathogen from iron. However, Salmonella activates distinctive defense mechanisms to acquire iron and survive in iron-restricted host environments. Yet, the comprehensive set of the conditionally essential genes that underpin Salmonella survival under ...... hiện toàn bộ
Transcriptomic analysis of salt tolerance-associated genes and diversity analysis using indel markers in yardlong bean (Vigna unguiculata ssp. sesquipedialis)
BMC Genomic Data - Tập 22 - Trang 1-15 - 2021
High salinity is a devastating abiotic stresses for crops. To understand the molecular basis of salinity stress in yardlong bean (Vigna unguiculata ssp. sesquipedalis), and to develop robust markers for improving this trait in germplasm, whole transcriptome RNA sequencing (RNA-seq) was conducted to compare the salt-tolerant variety Suzi 41 and salt-sensitive variety Sujiang 1419 under normal and s...... hiện toàn bộ
Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysis
BMC Genomic Data - Tập 22 Số 1 - Trang 1-14 - 2021
Different factors have been introduced which influence the pathogenesis of chronic obstructive pulmonary disease (COPD) and non-small cell lung cancer (NSCLC). COPD as an independent factor is involved in the development of lung cancer. Moreover, there are certain resemblances between NSCLC and COPD, such as growth factors, activation of intracellular pathways, as well as epigenetic factors. One o...... hiện toàn bộ
Ridge regression and deep learning models for genome-wide selection of complex traits in New Mexican Chile peppers
BMC Genomic Data - Tập 24 - Trang 1-13 - 2023
Genomewide prediction estimates the genomic breeding values of selection candidates which can be utilized for population improvement and cultivar development. Ridge regression and deep learning-based selection models were implemented for yield and agronomic traits of 204 chile pepper genotypes evaluated in multi-environment trials in New Mexico, USA. Accuracy of prediction differed across differen...... hiện toàn bộ
Xác định các gen và con đường chủ chốt trong ung thư đại trực tràng liên quan đến viêm đại tràng bằng phân tích thông tin sinh học tích hợp Dịch bởi AI
BMC Genomic Data - Tập 23 - Trang 1-13 - 2022
Bệnh nhân ung thư đại trực tràng liên quan đến viêm đại tràng (CAC) có độ tuổi khởi phát trẻ hơn, có nhiều tổn thương và khối u xâm lấn hơn so với bệnh nhân ung thư đại trực tràng rải rác. Việc phát hiện sớm CAC bằng nội soi là một thách thức, và tỷ lệ mắc ung thư đại trực tràng phân chia vẫn còn cao. Do đó, việc xác định các biomarker có thể dự đoán quá trình hình thành khối u của CAC là cực kỳ c...... hiện toàn bộ
Complete genome sequence of Schaalia odontolytica isolated from subgingival biofilm
BMC Genomic Data - Tập 25 - Trang 1-3 - 2024
Recent advancements in genome-based taxonomic classification propose the reclassification of certain Actinomyces species into new genera, including Schaalia. Schaalia odontolytica, the type species within this genus, is frequently found in the human oral cavity and has been associated with actinomycotic lesions. Currently, only two complete genomes of S. odontolytica strains have been reported. Re...... hiện toàn bộ
Genomic stability among O3:K6 V. parahaemolyticus pandemic strains isolated between 1996 to 2012 in American countries
BMC Genomic Data - Tập 22 - Trang 1-9 - 2021
The V. parahaemolyticus pandemic clone, results in the development of gastrointestinal illness in humans. Toxigenic strains of this species are frequently isolated from aquatic habitats and organisms such as mollusks and crustaceans. Reports on the isolation of the pandemic clone started in 1996, when a new O3:K6 clone was identified in Asia, that rapidly spread worldwide, becoming the predominant...... hiện toàn bộ
Re-wiring and gene expression changes of AC025034.1 and ATP2B1 play complex roles in early-to-late breast cancer progressionAbstract
Background
Elucidating the dynamic topological changes across different stages of breast cancer, called stage re-wiring, could lead to identifying key latent regulatory signatures involved in cancer progression. Such dynamic regulators and their functions are mostly unknown. Here, we recons... ... hiện toàn bộ
BMC Genomic Data - - 2022
Identification, evolution and expression analyses of the whole genome-wide PEBP gene family in Brassica napus L.
BMC Genomic Data - Tập 24 - Trang 1-18 - 2023
With the release of genomic data for B.rapa, B.oleracea, and B.napus, research on the genetic and molecular functions of Brassica spp. has entered a new stage. PEBP genes in plants play an important role in the transition to flowering as well as seed development and germination. Molecular evolutionary and functional analyses of the PEBP gene family in B.napus based on molecular biology methods can...... hiện toàn bộ
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