Web Resources for Model Organism Studies

Dietrich, 2014, Publication trends in model organism research, Genetics, 198, 787, 10.1534/genetics.114.169714 Blake, 2014, The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse, Nucleic Acids Res, 42, D810, 10.1093/nar/gkt1225 Kasprzyk, 2011, BioMart: driving a paradigm change in biological data management, Database (Oxford), 2011, 10.1093/database/bar049 Smith, 2012, InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data, Bioinformatics, 28, 3163, 10.1093/bioinformatics/bts577 Laulederkind, 2013, The rat genome database 2013 – data, tools and users, Brief Bioinformatics, 14, 520, 10.1093/bib/bbt007 Skrzypek, 2011, Using the Saccharomyces Genome Database (SGD) for analysis of genomic information, Curr Protoc Bioinformatics, 1 Hibbs, 2007, Exploring the functional landscape of gene expression: directed search of large microarray compendia, Bioinformatics, 23, 2692, 10.1093/bioinformatics/btm403 Basu, 2013, DictyBase 2013: integrating multiple Dictyostelid species, Nucleic Acids Res, 41, D676, 10.1093/nar/gks1064 Harris, 2014, WormBase 2014: new views of curated biology, Nucleic Acids Res, 42, D789, 10.1093/nar/gkt1063 St Pierre, 2014, FlyBase 102 – advanced approaches to interrogating FlyBase, Nucleic Acids Res, 42, D780, 10.1093/nar/gkt1092 Howe, 2013, ZFIN, the zebrafish model organism database: increased support for mutants and transgenics, Nucleic Acids Res, 41, D854, 10.1093/nar/gks938 Karpinka, 2014, Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes, Nucleic Acids Res, 43, D756, 10.1093/nar/gku956 Lamesch, 2012, The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools, Nucleic Acids Res, 40, D1202, 10.1093/nar/gkr1090 Kim, 2010, BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum, Nucleic Acids Res, 38, D437, 10.1093/nar/gkp807 Wodke, 2014, MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae, Nucleic Acids Res, 43, D618, 10.1093/nar/gku1105 Schaeffer, 2011, MaizeGDB: curation and outreach go hand-in-hand, Database (Oxford), 2011, 10.1093/database/bar022 Glasner, 2003, ASAP, a systematic annotation package for community analysis of genomes, Nucleic Acids Res, 31, 147, 10.1093/nar/gkg125