KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging Tập 4 Số 4 - Trang 259-263 - 2006
Zhang Zhang, Jun Li, Xiaoqian Zhao, Jun Wang, Gane Ka‐Shu Wong, Jun Yu
Abstract KaKs_Calculator is a software package that calculates nonsynonymous
(Ka) and synonymous (Ks) substitution rates through model selection and model
averaging. Since existing methods for this estimation adopt their specific
mutation (substitution) models that consider different evolutionary features,
leading to diverse estimates, KaKs_Calculator implements a set of candidate
models in a maxi... hiện toàn bộ
Tet2 Regulates Osteoclast Differentiation by Interacting with Runx1 and Maintaining Genomic 5-Hydroxymethylcytosine (5hmC) Tập 16 Số 3 - Trang 172-186 - 2018
Yajing Chu, Zhigang Zhao, David W. Sant, Ganqian Zhu, Sarah Greenblatt, Lin Liu, Jinhuan Wang, Zeng Cao, Jeanette Cheng Tho, Shi Chen, Xiaochen Liu, Peng Zhang, Jarosław P. Maciejewski, Stephen D. Nimer, Gaofeng Wang, Weiping Yuan, Feng‐Chun Yang, Mingjiang Xu
Abstract As a dioxygenase, Ten-Eleven Translocation 2 (TET2) catalyzes
subsequent steps of 5-methylcytosine (5mC) oxidation. TET2 plays a critical role
in the self-renewal, proliferation, and differentiation of hematopoietic stem
cells, but its impact on mature hematopoietic cells is not well-characterized.
Here we show that Tet2 plays an essential role in osteoclastogenesis. Deletion
of Tet2 impa... hiện toàn bộ
A Stack-Based Ensemble Framework for Detecting Cancer MicroRNA Biomarkers Tập 15 Số 6 - Trang 381-388 - 2017
Sriparna Saha, Sayantan Mitra, Ravi Kant Yadav
Abstract MicroRNA (miRNA) plays vital roles in biological processes like RNA
splicing and regulation of gene expression. Studies have revealed that there
might be possible links between oncogenesis and expression profiles of some
miRNAs, due to their differential expression between normal and tumor tissues.
However, the automatic classification of miRNAs into different categories by
considering th... hiện toàn bộ
GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis Tập 19 - Trang 452-460 - 2021
David G. Garmire, Xun Zhu, Aravind Mantravadi, Qianhui Huang, Breck Yunits, Yu Liu, Thomas Wolfgruber, Olivier Poirion, Tianying Zhao, Cédric Arisdakessian, Stefan Stanojevic, Lana X. Garmire
Identification of Age-associated Proteins and Functional Alterations in Human Retinal Pigment Epithelium Tập 20 - Trang 633-647 - 2022
Xiuxiu Jin, Jingyang Liu, Weiping Wang, Jiangfeng Li, Guangming Liu, Ruiqi Qiu, Mingzhu Yang, Meng Liu, Lin Yang, Xiaofeng Du, Bo Lei
Gclust: A Parallel Clustering Tool for Microbial Genomic Data Tập 17 - Trang 496-502 - 2019
Ruilin Li, Xiaoyu He, Chuangchuang Dai, Haidong Zhu, Xianyu Lang, Wei Chen, Xiaodong Li, Dan Zhao, Yu Zhang, Xinyin Han, Tie Niu, Yi Zhao, Rongqiang Cao, Rong He, Zhonghua Lu, Xuebin Chi, Weizhong Li, Beifang Niu