Unusual metabolism of 3,6-anhydro-L-galactose in Vibrio sp. EJY3 and in E. coli containing two Vibrio sp. EJY3 genes

Sun Bok Lee1
1Department of Chemical Engineering, Pohang University of Science and Technology, Pohang, Korea

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Lee, S. B., S. J. Cho, J. A. Kim, S. Y. Lee, S. M. Kim, and H. S. Lim (2014) Metabolic pathway of 3,6-anhydro-L-galactose in agar-degrading microorganisms. Biotechnol. Bioproc. Eng. 19: 866–878.

Cho, S. J. and S. B. Lee (2014) Identification and characterization of 3,6-anhydro-L-galactose dehydrogenases belonging to the aldehyde dehydrogenase superfamily from marine and soil microorganisms. Biotechnol. Bioproc. Eng. 19: 1058–1068.

Cho, S. J., J. A. Kim, and S. B. Lee (2015) Identification and characterization of 3,6-anhydro-L-galactonate cyloisomerase belonging to the enolase superfamily. Biotechnol. Bioproc. Eng. 20: 462–472.

Yun, E. J., S. Lee, H. T. Kim, J. G. Pelton, S. Kim, H. J. Ko, I. G. Choi, and K. H. Kim (2015) The novel catabolic pathway of 3,6-anhydro-L-galactose, the main component of red macroalgae, in a marine bacterium. Environ. Microbiol. 17: 1677–1688.

De Ley, J. and M. Doudoroff (1957) The metabolism of D-galactose in Pseudomonas saccharophila. J. Biol. Chem. 227: 745–757.

Perozich J., H. Nicholas, B. C. Wang, R. Lindahl, and J. Hempel (1999) Relationships within the aldehyde dehydrogenase extended family. Protein Sci. 8: 137–146.

Nickolas, A. S. and V. Vasiliou (2003) Aldehyde dehydrogenase gene superfamily: The 2002 update. Chem. Biol. Interact. 143–144: 5–22.

Gerlt, J. A., P. C. Babbitt, M. P. Jacobson, and S. C. Almo (2012) Divergent evolution in the enolase superfamily: Strategies for assigning function. J. Biol. Chem. 287: 29–34.

Lee, D. H., S. J. Cho, S. M. Kim, and S. B. Lee (2012) Postechiella marina gen. nov., sp. nov., isolated from seawater. Int. J. Syst. Evol. Microbiol. 62: 1528–1535.

Haworth, W. N., J. Jackson, and F. Smith (1940) The properties of 3:6-anhydrogalactose. J. Chem. Soc. 620–632.

Wilson, C. A., J. Kreychman, and M. Gerstein (2000) Assessing annotation transfer for genomics: Quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores. J. Mol. Biol. 297: 233–249.

Tian, W. and J. Skolnick (2003) How well is enzyme function conserved as a function of pairwise sequence identity? J. Mol. Biol. 333: 863–882.

Yun, E. J., I. G. Choi, and K. H. Kim (2015) Red macroalgae as a sustainable resource for bio-based products. Trends Biotechnol. 33: 247–249.