UniFrac: an effective distance metric for microbial community comparison
Tóm tắt
Từ khóa
Tài liệu tham khảo
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat Methods, 7, 335, 10.1038/nmeth.f.303
Castro, 2010, Soil microbial community responses to multiple experimental climate change drivers, Appl Environ Microbiol, 76, 999, 10.1128/AEM.02874-09
Chao, 2005, A new statistical approach for assessing similarity of species composition with incidence and abundance data, Ecol Lett, 8, 148, 10.1111/j.1461-0248.2004.00707.x
Hamady, 2010, Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data, ISME J, 4, 17, 10.1038/ismej.2009.97
Kuczynski, 2010, Direct sequencing of the human microbiome readily reveals community differences, Genome Biol, 11, 210, 10.1186/gb-2010-11-5-210
Lozupone, 2005, UniFrac: a new phylogenetic method for comparing microbial communities, Appl Environ Microbiol, 71, 8228, 10.1128/AEM.71.12.8228-8235.2005
Lozupone, 2007, Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities, Appl Environ Microbiol, 73, 1576, 10.1128/AEM.01996-06
Middelbos, 2010, Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing, PLoS One, 5, e9768, 10.1371/journal.pone.0009768
Rudin, 1987, Real and Complex Analysis, 3rd
Schloss, 2008, Evaluating different approaches that test whether microbial communities have the same structure, ISME J, 2, 265, 10.1038/ismej.2008.5
Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl Environ Microbiol, 75, 7537, 10.1128/AEM.01541-09