Sự chuyển tiếp trong các cộng đồng vi khuẩn dọc theo gradient độ mặn 2000 km của Biển Baltic

Acinas, 2004, Fine-scale phylogenetic architecture of a complex bacterial community, Nature, 430, 551, 10.1038/nature02649

Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res, 25, 3389, 10.1093/nar/25.17.3389

Andersson, 2008, Comparative analysis of human gut microbiota by barcoded pyrosequencing, PLoS One, 3, e2836, 10.1371/journal.pone.0002836

Andersson, 2009, Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities, ISME J, 4, 171, 10.1038/ismej.2009.108

Arnds, 2010, Development of a 16S rRNA-targeted probe set for Verrucomicrobia and its application for fluorescence in situ hybridization in a humic lake, Syst Appl Microbiol, 33, 139, 10.1016/j.syapm.2009.12.005

Bouvier, 2002, Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries, Limnol Oceanogr, 47, 453, 10.4319/lo.2002.47.2.0453

Cognetti, 2000, Biodiversity and adaptive mechanisms in brackish water fauna, Marine Pollut Bull, 40, 7, 10.1016/S0025-326X(99)00173-3

Cole, 2009, The Ribosomal Database Project: improved alignments and new tools for rRNA analysis, Nucleic Acids Res, 37, D141, 10.1093/nar/gkn879

Cottrell, 2003, Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary, Limnol Oceanogr, 48, 168, 10.4319/lo.2003.48.1.0168

Crump, 1999, Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean, Appl Environ Microbiol, 65, 3192, 10.1128/AEM.65.7.3192-3204.1999

Crump, 2004, Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time, Appl Environ Microbiol, 70, 1494, 10.1128/AEM.70.3.1494-1505.2004

DeSantis, 2006, Green genes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, Appl Environ Microbiol, 72, 5069, 10.1128/AEM.03006-05

Feistel, 2008, State and Evolution of the BALTIC Sea, 1952–2005: A Detailed 50-Year Survey of Meteorology and Climate, Physics, Chemistry, Biology, and Marine Environment. General Oceanography of the Baltic Sea, 10.1002/9780470283134

Giovannoni, 2005, Proteorhodopsin in the ubiquitous marine bacterium SAR11, Nature, 438, 82, 10.1038/nature04032

Hamady, 2010, Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data, ISME J, 4, 17, 10.1038/ismej.2009.97

Hamady, 2008, Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex, Nat Methods, 5, 235, 10.1038/nmeth.1184

Hayek, 1996, Surveying Natural Populations

Hubbell, 2001, The Unified Neutral Theory of Biodiversity and Biogeography

Kan, 2008, Novel estuarine bacterioplankton in rRNA operon libraries from the Chesapeake Bay, Aquat Microb Ecol, 51, 55, 10.3354/ame01177

Kell, 1973, Die Darβer Schwelle—eine biologische Grenze?, Wiss Zeit Univ Rostock, 22, 617

Kirchman, 2005, Biogeography of major bacterial groups in the Delaware estuary, Limnol Oceanogr, 50, 1697, 10.4319/lo.2005.50.5.1697

Kuczynski, 2011, Microbial community resemblance methods differ in their ability to detect biologically relevant patterns, Nat Methods, 7, 813, 10.1038/nmeth.1499

Labrenz, 2007, Distribution of abundant prokaryotic organisms in the water column of the central Baltic Sea with an oxic–anoxic interface, Aquat Microb Ecol, 46, 177, 10.3354/ame046177

Labrenz, 2005, Roseisalinus antarcticus gen. nov., sp. nov., a novel aerobic bacteriochlorophyll a-producing α-proteobacterium isolated from hypersaline Ekho Lake, Antarctica, Int J Syst Evol Micr, 55, 41, 10.1099/ijs.0.63230-0

Lozupone, 2007, Global patterns in bacterial diversity, Proc Natl Acad Sci USA, 104, 11436, 10.1073/pnas.0611525104

Ludwig, 2004, ARB: a software environment for sequence data, Nucleic Acids Res, 32, 1363, 10.1093/nar/gkh293

Murray, 1996, Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments, Appl Environ Microbiol, 62, 2676, 10.1128/aem.62.7.2676-2680.1996

Newton, 2011, A guide to the natural history of freshwater lake bacteria, Microbiol Mol Biol Rev, 75, 14, 10.1128/MMBR.00028-10

Ojaveer, 2010, Status of biodiversity in the Baltic Sea, PLoS One, 5, e12467, 10.1371/journal.pone.0012467

Polz, 1998, Bias in template-to-product ratios in multitemplate PCR, Appl Environ Microbiol, 64, 3724, 10.1128/AEM.64.10.3724-3730.1998

Pommier, 2007, Global patterns of diversity and community structure in marine bacterioplankton, Mol Ecol, 16, 867, 10.1111/j.1365-294X.2006.03189.x

Pruesse, 2007, SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB, Nucleic Acids Res, 35, 7188, 10.1093/nar/gkm864

Quince, 2011, Removing noise from pyrosequenced amplicons, BMC Bioinform, 12, 38, 10.1186/1471-2105-12-38

Rappé, 2000, Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems, FEMS Microbiol Ecol, 33, 219, 10.1016/S0168-6496(00)00064-7

Remane, 1934, Die Brackwasserfauna, Zool Anz, 7, 34

Reissmann, 2009, State-of-the-art review on vertical mixing in the Baltic Sea and consequences for eutrophication, Progr Oceanogr, 82, 47, 10.1016/j.pocean.2007.10.004

Rheinheimer, 1984, Bacterial ecology of the Baltic Sea, Bot Mar, 27, 277

Rusch, 2007, The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific, PLoS Biol, 5, e77, 10.1371/journal.pbio.0050077

Sabehi, 2005, New insights into metabolic properties of marine bacteria encoding proteorhodopsins, PLoS Biol, 3, e273, 10.1371/journal.pbio.0030273

Schiewer, 2008, Ecology of Baltic Coastal Waters. Series: Ecological Studies, vol. 197, 10.1007/978-3-540-73524-3

Setälä, 2003, Planktonic ciliates in the Baltic Sea in summer: distribution, species association and estimated grazing impact, Aquat Microb Ecol, 32, 287, 10.3354/ame032287

Shaw, 2008, It's all relative: ranking the diversity of aquatic bacterial communities, Environ Microbiol, 10, 2200, 10.1111/j.1462-2920.2008.01626.x

Sogin, 2006, Microbial diversity in the deep sea and the underexplored ‘rare biosphere’, Proc Natl Acad Sci USA, 103, 12115, 10.1073/pnas.0605127103

Sloan, 2006, Quantifying the roles of immigration and chance in shaping prokaryote community structure, Environ Microbiol, 8, 732, 10.1111/j.1462-2920.2005.00956.x

Suzuki, 1996, Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR, Appl Environ Microbiol, 62, 625, 10.1128/aem.62.2.625-630.1996

Suzuki, 1997, Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample, Appl Environ Microbiol, 63, 983, 10.1128/aem.63.3.983-989.1997

Telesh, 2010, Principal processes within the estuarine salinity gradient: a review, Mar Pollut Bull, 61, 4, 10.1016/j.marpolbul.2010.02.008

Uchino, 2002, Proposal of Pseudorhodobacter ferrugineus gen. nov., comb. nov., for a non-photosynthetic marine bacterium, Agrobacterium ferrugineum, related to the genus Rhodobacter, J Gen Appl Microbiol, 48, 309, 10.2323/jgam.48.309

Warnecke, 2004, Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages, Environ Microbiol, 6, 242, 10.1111/j.1462-2920.2004.00561.x

Wasmund, 2004, Biologische Zustandseinschätzung der Ostsee im Jahre 2003, Meereswissen Ber Warn, 60, 1

Wasmund, 1999, Phytoplankton in large river plumes in the Baltic Sea, ICES J Mar Sci, 56, 22, 10.1006/jmsc.1999.0615

Weinbauer, 2002, Simultaneous extraction from bacterioplankton of total RNA and DNA suitable for quantitative structure and function analyses, Appl Environ Microbiol, 68, 1082, 10.1128/AEM.68.3.1082-1087.2002

Wetzel, 2001, Salinity of Inland Waters. Limnology

Witkowski, 2005, Darss Sill as a border in the fossil record of the Baltic Sea: evidence from diatoms, Quatern Int, 130, 97, 10.1016/j.quaint.2004.04.035

Wu, 2006, Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China, Appl Environ Microbiol, 72, 5478, 10.1128/AEM.00767-06

Ysebaert, 2003, Large-scale spatial patterns in estuaries: estuarine macrobenthic communities in the Schelde estuary, NW Europe, Estuar Coast Shelf S, 57, 335, 10.1016/S0272-7714(02)00359-1

Zhang, 2006, Contribution of major bacterial groups to bacterial biomass production along a salinity gradient in the South China Sea, Aquat Microb Ecol, 43, 233, 10.3354/ame043233