Transcriptome assembly strategies for precision medicine

Lu Wang1, Lipi Acharya2, Changxin Bai1, Dongxiao Zhu1
1Wayne State University
2DOW AgroSciences

Tóm tắt

BackgroundPrecision medicine approach holds great promise to tailored diagnosis, treatment and prevention. Individuals can be vastly different in their genomic information and genetic mechanisms hence having unique transcriptomic signatures. The development of precision medicine has demanded moving beyond DNA sequencing (DNA‐Seq) to much more pointed RNA‐sequencing (RNA‐Seq) [ Cell, 2017, 168: 584–599].ResultsHere we conduct a brief survey on the recent methodology development of transcriptome assembly approach using RNA‐Seq.ConclusionsSince transcriptomes in human disease are highly complex, dynamic and diverse, transcriptome assembly is playing an increasingly important role in precision medicine research to dissect the molecular mechanisms of the human diseases.

Từ khóa


Tài liệu tham khảo

10.1089/gen.35.05.03

10.1002/wsbm.1198

10.1056/NEJMp1500523

10.18632/oncoscience.66

10.1371/journal.pone.0135677

L. Nayak, 2016, Precision medicine with electronic medical records: from the patients and for the patients, Ann. Transl. Med., 4, S61, 10.21037/atm.2016.10.40

10.1016/j.csbj.2014.11.005

10.1186/s12918‐016‐0306‐z

10.1016/j.cell.2016.12.015

10.1186/s13059‐016‐0881‐8

10.1038/nrg3068

10.1101/gr.074492.107

10.1101/gr.089532.108

10.1073/pnas.171285098

10.1371/journal.pone.0079667

10.1038/nbt.1883

Bruijn N.(1946)A Combinatorial Problem. InProceedings of the Koninklijke Nederlandse Akademie van Wetenschappen. Series A 49 758–764.

10.1093/bioinformatics/bts094

10.1093/bioinformatics/btu077

10.1093/bioinformatics/btp336

10.1186/1471‐2164‐12‐131

10.1093/dnares/dsq028

10.1186/1471‐2105‐12‐S14‐S2

10.1038/nmeth.1517

10.1038/nprot.2012.016

10.1093/bioinformatics/btp120

10.1038/nrg3174

10.1186/s13059‐015‐0596‐2

10.1186/s13059‐014‐0501‐4

10.1186/gb‐2013‐14‐4‐r36

10.1186/1471‐2164‐11‐663

10.1038/nprot.2013.084

10.1038/nbt.1621

10.1038/nbt.1633

10.1186/s13059‐016‐1074‐1

10.1089/cmb.1995.2.275

10.1186/1471‐2164‐11‐571

10.1186/1471‐2164‐12‐581

10.1371/journal.pone.0001659

10.1186/s13059‐014‐0553‐5

10.1038/nmeth.1613