TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists
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Tài liệu tham khảo
Love, 2014, Moderated estimation of fold change and dispersion for RNA - seq data with, Genome Biol, 15, 550, 10.1186/s13059-014-0550-8
Takahashi, 2009, MiR and MiR can induce cell cycle arrest in human non small cell lung cancer cell lines One, 107
Yanaihara, 2006, Unique microRNA molecular profiles in lung cancer diagnosis and prognosis, Cancer Cell, 189, 10.1016/j.ccr.2006.01.025
Wang, 2011, functions as a tumor suppressor in human non - small cell lung cancer by targeting ras - related protein, Oncogene, 14, 451
Plaisier, 2010, Rank - rank hypergeometric overlap : identification of statistically significant overlap between gene - expression signatures, Nucleic Acids Res, 169, 10.1093/nar/gkq636
Schimek, 2012, An inference and integration approach for the consolidation of ranked lists, Commun Stat Simul, 1152, 10.1080/03610918.2012.625843
Lin, 2010, Space oriented rank - based data integration Article, Stat Appl Genet Mol Biol, 9, 10.2202/1544-6115.1534.Epub2010Apr9
Hall, 2012, Moderate - deviation - based inference for random degeneration in paired rank lists, Am Stat Assoc, 107
Wang, 2011, functions as a tumor suppressor in human non - small cell lung cancer by targeting ras - related protein, Oncogene, 14, 451
Love, 2014, Moderated estimation of fold change and dispersion for RNA - seq data with, Genome Biol, 15, 550, 10.1186/s13059-014-0550-8
Lin, 2009, Integration of ranked lists via Cross Entropy Monte Carlo with applications to mRNA and microRNA studies, Biometrics, 9, 10.1111/j.1541-0420.2008.01044.x
Yanaihara, 2006, Unique microRNA molecular profiles in lung cancer diagnosis and prognosis, Cancer Cell, 189, 10.1016/j.ccr.2006.01.025
Lin, 2009, Integration of ranked lists via Cross Entropy Monte Carlo with applications to mRNA and microRNA studies, Biometrics, 9, 10.1111/j.1541-0420.2008.01044.x
Hall, 2012, Moderate - deviation - based inference for random degeneration in paired rank lists, Am Stat Assoc, 107
Yang, 2006, Similarities of ordered gene lists, Comput Biol, 693
Tam, 2014, de Robust global microRNA expression profiling using next - generation sequencing technologies, Lab Invest, 350, 10.1038/labinvest.2013.157
Kugler, 2010, MADAM an open source meta - analysis toolbox for Source Code, Biol Med, 5
Gao, 2010, Deregulated expression of miR miR and miR a in non small cell lung cancer is related to clinicopathologic characteristics or patient prognosis, Biomed Pharmacother, 21, 143
Takahashi, 2009, MiR and MiR can induce cell cycle arrest in human non small cell lung cancer cell lines One, 107
Lin, 2010, Space oriented rank - based data integration Article, Stat Appl Genet Mol Biol, 9, 10.2202/1544-6115.1534.Epub2010Apr9
Gao, 2010, Deregulated expression of miR miR and miR a in non small cell lung cancer is related to clinicopathologic characteristics or patient prognosis, Biomed Pharmacother, 21, 143
Schimek, 2012, An inference and integration approach for the consolidation of ranked lists, Commun Stat Simul, 1152, 10.1080/03610918.2012.625843
Kugler, 2010, MADAM an open source meta - analysis toolbox for Source Code, Biol Med, 5
Plaisier, 2010, Rank - rank hypergeometric overlap : identification of statistically significant overlap between gene - expression signatures, Nucleic Acids Res, 169, 10.1093/nar/gkq636
Yang, 2006, Similarities of ordered gene lists, Comput Biol, 693