The scientific impact of microbial cell factories
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García-Fruitós E, González-Montalbán N, Morell M, Vera A, Ferraz RM, Arís A, Ventura S, Villaverde A: Aggregation as bacterial inclusion bodies does not imply inactivation of enzymes and fluorescent proteins. Microb Cell Fact. 2005, 4: 27- 10.1186/1475-2859-4-27.
Lethanh H, Neubauer P, Hoffmann F: The small heat-shock proteins IbpA and IbpB reduce the stress load of recombinant Escherichia coli and delay degradation of inclusion bodies. Microb Cell Fact. 2005, 4: 6- 10.1186/1475-2859-4-6.
Vallejo LF, Rinas U: Strategies for the recovery of active proteins through refolding of bacterial inclusion body proteins. Microb Cell Fact. 2004, 3: 11- 10.1186/1475-2859-3-11.
Miot M, Betton JM: Protein quality control in the bacterial periplasm. Microb Cell Fact. 2004, 3: 4- 10.1186/1475-2859-3-4.
Gasser B, Saloheimo M, Rinas U, Dragosits M, Rodríguez-Carmona E, Baumann K, Giuliani M, Parrilli E, Branduardi P, Lang C, Porro D, Ferrer P, Tutino ML, Mattanovich D, Villaverde A: Protein folding and conformational stress in microbial cells producing recombinant proteins: a host comparative overview. Microb Cell Fact. 2008, 7: 11- 10.1186/1475-2859-7-11.
Weibezahn J, Bukau B, Mogk A: Unscrambling an egg: protein disaggregation by AAA+ proteins. Microb Cell Fact. 2004, 3: 1- 10.1186/1475-2859-3-1.
de Marco A: Minimal information: an urgent need to assess the functional reliability of recombinant proteins used in biological experiments. Microb Cell Fact. 2008, 7: 20- 10.1186/1475-2859-7-20.
de Marco A: A step ahead: combining protein purification and correct folding selection. Microb Cell Fact. 2004, 3: 12- 10.1186/1475-2859-3-12.
Sorensen HP, Mortensen KK: Soluble expression of recombinant proteins in the cytoplasm of Escherichia coli. Microb Cell Fact. 2005, 4: 1- 10.1186/1475-2859-4-1.
Dummler A, Lawrence AM, de MA: Simplified screening for the detection of soluble fusion constructs expressed in E. coli using a modular set of vectors. Microb Cell Fact. 2005, 4: 34- 10.1186/1475-2859-4-34.
Martirani L, Varcamonti M, Naclerio G, De FM: Purification and partial characterization of bacillocin 490, a novel bacteriocin produced by a thermophilic strain of Bacillus licheniformis. Microb Cell Fact. 2002, 1: 1- 10.1186/1475-2859-1-1.
Rosso AM, Ferrarotti SA, Krymkiewicz N, Nudel BC: Optimisation of batch culture conditions for cyclodextrin glucanotransferase production from Bacillus circulans DF 9R. Microb Cell Fact. 2002, 1: 3- 10.1186/1475-2859-1-3.
Zweers JC, Barák I, Becher D, Driessen AJ, Hecker M, Kontinen VP, Saller MJ, Vavrová L, van Dijl JM: Towards the development of Bacillus subtilis as a cell factory for membrane proteins and protein complexes. Microb Cell Fact. 2008, 7: 10- 10.1186/1475-2859-7-10.
Joosten V, Lokman C, Hondel Van Den CA, Punt PJ: The production of antibody fragments and antibody fusion proteins by yeasts and filamentous fungi. Microb Cell Fact. 2003, 2: 1- 10.1186/1475-2859-2-1.
Nakashima N, Mitani Y, Tamura T: Actinomycetes as host cells for production of recombinant proteins. Microb Cell Fact. 2005, 4: 7- 10.1186/1475-2859-4-7.
Viitanen MI, Vasala A, Neubauer P, Alatossava T: Cheese whey-induced high-cell-density production of recombinant proteins in Escherichia coli. Microb Cell Fact. 2003, 2: 2- 10.1186/1475-2859-2-2.
Mierau I, Leij P, van Swam I, Blommestein B, Floris E, Mond J, Smid EJ: Industrial-scale production and purification of a heterologous protein in Lactococcus lactis using the nisin-controlled gene expression system NICE: the case of lysostaphin. Microb Cell Fact. 2005, 4: 15- 10.1186/1475-2859-4-15.
Le Loir Y, Azevedo V, Oliveira SC, Freitas DA, Miyoshi A, Bermúdez-Humarán LG, Nouaille S, Ribeiro LA, Leclercq S, Gabriel JE, Guimaraes VD, Oliveira MN, Charlier C, Gautier M, Langella P: Protein secretion in Lactococcus lactis: an efficient way to increase the overall heterologous protein production. Microb Cell Fact. 2005, 4: 2- 10.1186/1475-2859-4-2.
Blecha A, Zarschler K, Sjollema KA, Veenhuis M, Rodel G: Expression and cytosolic assembly of the S-layer fusion protein mSbsC-EGFP in eukaryotic cells. Microb Cell Fact. 2005, 4: 28- 10.1186/1475-2859-4-28.
Parrilli E, De VD, Cirulli C, Tutino ML: Development of an improved Pseudoalteromonas haloplanktis TAC125 strain for recombinant protein secretion at low temperature. Microb Cell Fact. 2008, 7: 2- 10.1186/1475-2859-7-2.
Salzano AM, Febbraio F, Farias T, Cetrangolo GP, Nucci R, Scaloni A, Manco G: Redox stress proteins are involved in adaptation response of the hyperthermoacidophilic archaeon Sulfolobus solfataricus to nickel challenge. Microb Cell Fact. 2007, 6: 25- 10.1186/1475-2859-6-25.
Ventura S: Sequence determinants of protein aggregation: tools to increase protein solubility. Microb Cell Fact. 2005, 4: 11- 10.1186/1475-2859-4-11.
Ignatova Z: Monitoring protein stability in vivo. Microb Cell Fact. 2005, 4: 23- 10.1186/1475-2859-4-23.
Banki MR, Wood DW: Inteins and affinity resin substitutes for protein purification and scale up. Microb Cell Fact. 2005, 4: 32- 10.1186/1475-2859-4-32.
Philibert P, Martineau P: Directed evolution of single-chain Fv for cytoplasmic expression using the beta-galactosidase complementation assay results in proteins highly susceptible to protease degradation and aggregation. Microb Cell Fact. 2004, 3: 16- 10.1186/1475-2859-3-16.
Scheibel T: Spider silks: recombinant synthesis, assembly, spinning, and engineering of synthetic proteins. Microb Cell Fact. 2004, 3: 14- 10.1186/1475-2859-3-14.
Gosset G: Improvement of Escherichia coli production strains by modification of the phosphoenolpyruvate:sugar phosphotransferase system. Microb Cell Fact. 2005, 4: 14- 10.1186/1475-2859-4-14.
Badotti F, Dário MG, Alves SL, Cordioli ML, Miletti LC, de Araujo PS, Stambuk BU: Switching the mode of sucrose utilization by Saccharomyces cerevisiae. Microb Cell Fact. 2008, 7: 4- 10.1186/1475-2859-7-4.
Salusjarvi L, Kankainen M, Soliymani R, Pitkanen JP, Penttila M, Ruohonen L: Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae. Microb Cell Fact. 2008, 7: 18- 10.1186/1475-2859-7-18.
Petschacher B, Nidetzky B: Altering the coenzyme preference of xylose reductase to favor utilization of NADH enhances ethanol yield from xylose in a metabolically engineered strain of Saccharomyces cerevisiae. Microb Cell Fact. 2008, 7: 9-
Liang L, Zhang J, Lin Z: Altering coenzyme specificity of Pichia stipitis xylose reductase by the semi-rational approach CASTing. Microb Cell Fact. 2007, 6: 36- 10.1186/1475-2859-6-36.
Karhumaa K, Garcia SR, Hahn-Hagerdal B, Gorwa-Grauslund MF: Comparison of the xylose reductase-xylitol dehydrogenase and the xylose isomerase pathways for xylose fermentation by recombinant Saccharomyces cerevisiae. Microb Cell Fact. 2007, 6: 5- 10.1186/1475-2859-6-5.
Branduardi P, Sauer M, De Gioia L, Zampella G, Valli M, Mattanovich D, Porro D: Lactate production yield from engineered yeasts is dependent from the host background, the lactate dehydrogenase source and the lactate export. Microb Cell Fact. 2006, 5: 4- 10.1186/1475-2859-5-4.
Martínez K, de Anda R, Hernández G, Escalante A, Gosset G, Ramírez OT, Bolívar FG: Coutilization of glucose and glycerol enhances the production of aromatic compounds in an Escherichia coli strain lacking the phosphoenolpyruvate: carbohydrate phosphotransferase system. Microb Cell Fact. 2008, 7: 1- 10.1186/1475-2859-7-1.
Cardillo AB, Rodriguez TJ, Giulietti AM: Expression of Brugmansia candida Hyoscyamine 6beta-Hydroxylase gene in Saccharomyces cerevisiae and its potential use as biocatalyst. Microb Cell Fact. 2008, 7: 17- 10.1186/1475-2859-7-17.
Martin JF, Gudina E, Barredo JL: Conversion of beta-carotene into astaxanthin: Two separate enzymes or a bifunctional hydroxylase-ketolase protein?. Microb Cell Fact. 2008, 7: 3- 10.1186/1475-2859-7-3.
Galindo E, Pena C, Nunez C, Segura D, Espin G: Molecular and bioengineering strategies to improve alginate and polydydroxyalkanoate production by Azotobacter vinelandii. Microb Cell Fact. 2007, 6: 7- 10.1186/1475-2859-6-7.
Mattanovich D, Borth N: Applications of cell sorting in biotechnology. Microb Cell Fact. 2006, 5: 12- 10.1186/1475-2859-5-12.
Sauer M, Branduardi P, Gasser B, Valli M, Maurer M, Porro D, Mattanovich D: Differential gene expression in recombinant Pichia pastoris analysed by heterologous DNA microarray hybridisation. Microb Cell Fact. 2004, 3: 17- 10.1186/1475-2859-3-17.
Baez-Viveros JL, Flores N, Juarez K, Castillo-Espana P, Bolivar F, Gosset G: Metabolic transcription analysis of engineered Escherichia coli strains that overproduce L-phenylalanine. Microb Cell Fact. 2007, 6: 30- 10.1186/1475-2859-6-30.
Peano C, Bicciato S, Corti G, Ferrari F, Rizzi E, Bonnal RJ, Bordoni R, Albertini A, Bernardi LR, Donadio S, De Bellis G: Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays. Microb Cell Fact. 2007, 6: 37- 10.1186/1475-2859-6-37.
Jaluria P, Konstantopoulos K, Betenbaugh M, Shiloach J: A perspective on microarrays: current applications, pitfalls, and potential uses. Microb Cell Fact. 2007, 6: 4- 10.1186/1475-2859-6-4.
Graham RL, Graham C, McMullan G: Microbial proteomics: a mass spectrometry primer for biologists. Microb Cell Fact. 2007, 6: 26- 10.1186/1475-2859-6-26.
Frick O, Wittmann C: Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis. Microb Cell Fact. 2005, 4: 30- 10.1186/1475-2859-4-30.
Becker J, Klopprogge C, Wittmann C: Metabolic responses to pyruvate kinase deletion in lysine producing Corynebacterium glutamicum. Microb Cell Fact. 2008, 7: 8- 10.1186/1475-2859-7-8.
Faijes M, Mars AE, Smid EJ: Comparison of quenching and extraction methodologies for metabolome analysis of Lactobacillus plantarum. Microb Cell Fact. 2007, 6: 27- 10.1186/1475-2859-6-27.
Ferrer P: Systems biology and biological systems diversity for the engineering of microbial cell factories. Microb Cell Fact. 2007, 6: 35- 10.1186/1475-2859-6-35.
Hahn-Hagerdal B, Karhumaa K, Larsson CU, Gorwa-Grauslund M, Gorgens J, van Zyl WH: Role of cultivation media in the development of yeast strains for large scale industrial use. Microb Cell Fact. 2005, 4: 31- 10.1186/1475-2859-4-31.
Cos O, Ramon R, Montesinos JL, Valero F: Operational strategies, monitoring and control of heterologous protein production in the methylotrophic yeast Pichia pastoris under different promoters: a review. Microb Cell Fact. 2006, 5: 17- 10.1186/1475-2859-5-17.
Patnaik PR: "Intelligent" descriptions of microbial kinetics in finitely dispersed bioreactors: neural and cybernetic models for PHB biosynthesis by Ralstonia eutropha. Microb Cell Fact. 2007, 6: 23- 10.1186/1475-2859-6-23.
Clementschitsch F, Bayer K: Improvement of bioprocess monitoring: development of novel concepts. Microb Cell Fact. 2006, 5: 19- 10.1186/1475-2859-5-19.
Betts JI, Baganz F: Miniature bioreactors: current practices and future opportunities. Microb Cell Fact. 2006, 5: 21- 10.1186/1475-2859-5-21.
Rautio J, Barken KB, Lahdenpera J, Breitenstein A, Molin S, Neubauer P: Sandwich hybridisation assay for quantitative detection of yeast RNAs in crude cell lysates. Microb Cell Fact. 2003, 2: 4- 10.1186/1475-2859-2-4.
Skulj M, Okrslar V, Jalen S, Jevsevar S, Slanc P, Strukelj B, Menart V: Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes. Microb Cell Fact. 2008, 7: 6- 10.1186/1475-2859-7-6.
Heermann R, Zeppenfeld T, Jung K: Simple generation of site-directed point mutations in the Escherichia coli chromosome using Red/ET Recombination. Microb Cell Fact. 2008, 7: 14- 10.1186/1475-2859-7-14.
Büssow K, Scheich C, Sievert V, Harttig U, Schultz J, Simon B, Bork P, Lehrach H, Heinemann U: Structural genomics of human proteins – target selection and generation of a public catalogue of expression clones. Microb Cell Fact. 2005, 4: 21- 10.1186/1475-2859-4-21.
Dherbecourt J, Falentin H, Canaan S, Thierry A: A genomic search approach to identify esterases in Propionibacterium freudenreichii involved in the formation of flavour in Emmental cheese. Microb Cell Fact. 2008, 7: 16- 10.1186/1475-2859-7-16.
Wang Z, Xiang L, Shao J, Wegrzyn A, Wegrzyn G: Effects of the presence of ColE1 plasmid DNA in Escherichia coli on the host cell metabolism. Microb Cell Fact. 2006, 5: 34- 10.1186/1475-2859-5-34.
Flores FJ, Rincon J, Martin JF: Characterization of the iron-regulated desA promoter of Streptomyces pilosus as a system for controlled gene expression in actinomycetes. Microb Cell Fact. 2003, 2: 5- 10.1186/1475-2859-2-5.
Vethanayagam JG, Flower AM: Decreased gene expression from T7 promoters may be due to impaired production of active T7 RNA polymerase. Microb Cell Fact. 2005, 4: 3- 10.1186/1475-2859-4-3.
Soini J, Falschlehner C, Mayer C, Böhm D, Weinel S, Panula J, Vasala A, Neubauer P: Transient increase of ATP as a response to temperature up-shift in Escherichia coli. Microb Cell Fact. 2005, 4: 9- 10.1186/1475-2859-4-9.
Mierau I, Olieman K, Mond J, Smid EJ: Optimization of the Lactococcus lactis nisin-controlled gene expression system NICE for industrial applications. Microb Cell Fact. 2005, 4: 16- 10.1186/1475-2859-4-16.
Marx H, Mattanovich D, Sauer M: Overexpression of the riboflavin biosynthetic pathway in Pichia pastoris. Microb Cell Fact. 2008, 7: 23- 10.1186/1475-2859-7-23.
Bahey-El-Din M, Griffin BT, Gahan CG: Nisin inducible production of listeriolysin O in Lactococcus lactis NZ9000. Microb Cell Fact. 2008, 7: 24- 10.1186/1475-2859-7-24.
Roge J, Betton JM: Use of pIVEX plasmids for protein overproduction in Escherichia coli. Microb Cell Fact. 2005, 4: 18- 10.1186/1475-2859-4-18.
Gabig-Ciminska M, Andresen H, Albers J, Hintsche R, Enfors SO: Identification of pathogenic microbial cells and spores by electrochemical detection on a biochip. Microb Cell Fact. 2004, 3: 2- 10.1186/1475-2859-3-2.
Danchin A: The bag or the spindle: the cell factory at the time of systems' biology. Microb Cell Fact. 2004, 3: 13- 10.1186/1475-2859-3-13.
Bansal AK: Bioinformatics in microbial biotechnology – a mini review. Microb Cell Fact. 2005, 4: 19- 10.1186/1475-2859-4-19.
Centeno NB, Planas-Iglesias J, Oliva B: Comparative modelling of protein structure and its impact on microbial cell factories. Microb Cell Fact. 2005, 4: 20- 10.1186/1475-2859-4-20.
Wegrzyn G, Wegrzyn A: Stress responses and replication of plasmids in bacterial cells. Microb Cell Fact. 2002, 1: 2- 10.1186/1475-2859-1-2.
DeLisa MP, Bentley WE: Bacterial autoinduction: looking outside the cell for new metabolic engineering targets. Microb Cell Fact. 2002, 1: 5- 10.1186/1475-2859-1-5.
Lioliou EE, Kyriakidis DA: The role of bacterial antizyme: From an inhibitory protein to AtoC transcriptional regulator. Microb Cell Fact. 2004, 3: 8- 10.1186/1475-2859-3-8.
Skorupska A, Janczarek M, Marczak M, Mazur A, Krol J: Rhizobial exopolysaccharides: genetic control and symbiotic functions. Microb Cell Fact. 2006, 5: 7- 10.1186/1475-2859-5-7.
Yun J, Ryu S: Screening for novel enzymes from metagenome and SIGEX, as a way to improve it. Microb Cell Fact. 2005, 4: 8- 10.1186/1475-2859-4-8.
Glenting J, Wessels S: Ensuring safety of DNA vaccines. Microb Cell Fact. 2005, 4: 26- 10.1186/1475-2859-4-26.
Gabig-Ciminska M: Developing nucleic acid-based electrical detection systems. Microb Cell Fact. 2006, 5: 9- 10.1186/1475-2859-5-9.
Ruffing A, Chen RR: Metabolic engineering of microbes for oligosaccharide and polysaccharide synthesis. Microb Cell Fact. 2006, 5: 25- 10.1186/1475-2859-5-25.
Pscheidt B, Glieder A: Yeast cell factories for fine chemical and API production. Microb Cell Fact. 2008, 7: 25- 10.1186/1475-2859-7-25.
Dutta D, De D, Chaudhuri S, Bhattacharya SK: Hydrogen production by Cyanobacteria. Microb Cell Fact. 2005, 4: 36- 10.1186/1475-2859-4-36.
Sivaprakasam S, Mahadevan S, Sekar S, Rajakumar S: Biological treatment of tannery wastewater by using salt-tolerant bacterial strains. Microb Cell Fact. 2008, 7: 15- 10.1186/1475-2859-7-15.
Hartner FS, Glieder A: Regulation of methanol utilisation pathway genes in yeasts. Microb Cell Fact. 2006, 5: 39- 10.1186/1475-2859-5-39.
Serrano LM, Molenaar D, Wels M, Teusink B, Bron PA, de Vos WM, Smid EJ: Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1. Microb Cell Fact. 2007, 6: 29- 10.1186/1475-2859-6-29.
Castaldo C, Siciliano RA, Muscariello L, Marasco R, Sacco M: CcpA affects expression of the groESL and dnaK operons in Lactobacillus plantarum. Microb Cell Fact. 2006, 5: 35- 10.1186/1475-2859-5-35.
Barghini P, Di GD, Fava F, Ruzzi M: Vanillin production using metabolically engineered Escherichia coli under non-growing conditions. Microb Cell Fact. 2007, 6: 13- 10.1186/1475-2859-6-13.
Burgess CM, Smid EJ, Rutten G, van SD: A general method for selection of riboflavin-overproducing food grade micro-organisms. Microb Cell Fact. 2006, 5: 24- 10.1186/1475-2859-5-24.
Chemler JA, Yan Y, Koffas MA: Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae. Microb Cell Fact. 2006, 5: 20- 10.1186/1475-2859-5-20.
Rodriguez AP, Leiro RF, Trillo MC, Cerdan ME, Siso MI, Becerra M: Secretion and properties of a hybrid Kluyveromyces lactis-Aspergillus niger beta-galactosidase. Microb Cell Fact. 2006, 5: 41- 10.1186/1475-2859-5-41.
Hellmuth K: Industrial scale production of chymosin with Aspergillus niger. Microb Cell Fact. 2006, 5 (Suppl 1): S31-10.1186/1475-2859-5-S1-S31. 10.1186/1475-2859-5-S1-S31.
Papi RM, Chaitidou SA, Trikka FA, Kyriakidis DA: Encapsulated Escherichia coli in alginate beads capable of secreting a heterologous pectin lyase. Microb Cell Fact. 2005, 4: 35- 10.1186/1475-2859-4-35.
Mierau I: NIisin Controlled gene Expression (NICE) in Lactococcus lactis – versatile applications ranging from membrane proteins to large scale processes. Microb Cell Fact. 2006, S39-10.1186/1475-2859-5-S1-S39.