The combined effects of treated wastewater irrigation and plastic mulch cover on soil and crop microbial communities
Tóm tắt
Từ khóa
Tài liệu tham khảo
Angel R (2012) Total nucleic acid extraction from soil. Protoc Exch:5–11. https://doi.org/10.1038/protex.2012.046
Aßhauer KP, Wemheuer B, Daniel R, Meinicke P (2015) Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data. Bioinformatics 31:2882–2884. https://doi.org/10.1093/bioinformatics/btv287
Bardhan G, Russo D, Goldstein D, Levy GJ (2016) Changes in the hydraulic properties of a clay soil under long-term irrigation with treated wastewater. Geoderma 264:1–9. https://doi.org/10.1016/j.geoderma.2015.10.004
Bastida F, Torres IF, Romero-Trigueros C, Baldrian P, Větrovský T, Bayona JM, Alarcón JJ, Hernández T, García C, Nicolás E (2017) Combined effects of reduced irrigation and water quality on the soil microbial community of a citrus orchard under semi-arid conditions. Soil Biol Biochem 104:226–237. https://doi.org/10.1016/j.soilbio.2016.10.024
Bastida F, Torres IF, Abadía J, Romero-Trigueros C, Ruiz-Navarro A, Alarcón JJ, García C, Nicolás E (2018) Comparing the impacts of drip irrigation by freshwater and reclaimed wastewater on the soil microbial community of two citrus species. Agric Water Manag 203:53–62. https://doi.org/10.1016/j.agwat.2018.03.001
Becerra-Castro C, Lopes AR, Vaz-Moreira I, Silva EF, Manaia CM, Nunes OC (2015) Wastewater reuse in irrigation: a microbiological perspective on implications in soil fertility and human and environmental health. Environ Int 75:117–135. https://doi.org/10.1016/j.envint.2014.11.001
Bedbabis S, Trigui D, Ben Ahmed C, Clodoveo ML, Camposeo S, Vivaldi GA, Rouina BB (2015) Long-terms effects of irrigation with treated municipal wastewater on soil, yield and olive oil quality. Agric Water Manag 160:14–21. https://doi.org/10.1016/j.agwat.2015.06.023
Benami M, Gross A, Herzberg M, Orlofsky E, Vonshak A, Gillor O (2013) Assessment of pathogenic bacteria in treated graywater and irrigated soils. Sci Total Environ 458–460:298–302. https://doi.org/10.1016/j.scitotenv.2013.04.023
Bonkowski M (2004) Protozoa and plant growth: the microbial loop in soil revisited. New Phytol 162:617–631. https://doi.org/10.1111/j.1469-8137.2004.01066.x
Bughici T, Wallach R (2016) Formation of soil–water repellency in olive orchards and its influence on infiltration pattern. Geoderma 262:1–11. https://doi.org/10.1016/j.geoderma.2015.08.002
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336. https://doi.org/10.1038/nmeth.f.303
Cui B, Luo J, Jin D, Jin B, Zhuang X, Bai Z (2018) Investigating the bacterial community and amoebae population in rural domestic wastewater reclamation for irrigation. J Environ Sci 70:97–105. https://doi.org/10.1016/j.jes.2017.11.018
Cui E, Fan X, Li Z, Liu Y, Neal AL, Hu C, Gao F (2019) Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation. Appl Soil Ecol 142:99–109. https://doi.org/10.1016/j.apsoil.2019.04.026
Ekelund F, Rønn R (1994) Notes on protozoa in agricultural soil with emphasis on heterotrophic flagellates and naked amoebae and their ecology. FEMS Microbiol Rev 15:321–353. https://doi.org/10.1111/j.1574-6976.1994.tb00144.x
Euringer K, Lueders T (2008) An optimised PCR/T-RFLP fingerprinting approach for the investigation of protistan communities in groundwater environments. J Microbiol Methods 75:262–268. https://doi.org/10.1016/j.mimet.2008.06.012
Filipović V, Romić D, Romić M, Borošić J, Filipović L, Mallmann FJK, Robinson DA (2016) Plastic mulch and nitrogen fertigation in growing vegetables modify soil temperature, water and nitrate dynamics: experimental results and a modeling study. Agric Water Manag 176:100–110. https://doi.org/10.1016/j.agwat.2016.04.020
Frenk S, Hadar Y, Minz D (2014) Resilience of soil bacterial community to irrigation with water of different qualities under Mediterranean climate. Environ Microbiol 16:559–569. https://doi.org/10.1111/1462-2920.12183
Frenk S, Dag A, Yermiyahu U, Zipori I, Hadar Y, Minz D (2015) Seasonal effect and anthropogenic impact on the composition of the active bacterial community in Mediterranean orchard soil. FEMS Microbiol Ecol 91:fiv096. https://doi.org/10.1093/femsec/fiv096
Friedman H, Bernstein N, Bruner M, Rot I, Ben-Noon Z, Zuriel A, Zuriel R, Finkelstein S, Umiel N, Hagiladi A (2007) Application of secondary-treated effluents for cultivation of sunflower (Helianthus annuus L.) and celosia (Celosia argentea L.) as cut flowers. Sci Hortic 115:62–69. https://doi.org/10.1016/j.scienta.2007.07.003
García-Orenes F, Caravaca F, Morugán-Coronado A, Roldán A (2015) Prolonged irrigation with municipal wastewater promotes a persistent and active soil microbial community in a semiarid agroecosystem. Agric Water Manag 149:115–122. https://doi.org/10.1016/j.agwat.2014.10.030
Geisen S, Bandow C, Römbke J, Bonkowski M (2014) Soil water availability strongly alters the community composition of soil protists. Pedobiologia 57:205–213. https://doi.org/10.1016/j.pedobi.2014.10.001
Geisen S, Koller R, Hünninghaus M, Dumack K, Urich T, Bonkowski M (2016) The soil food web revisited: diverse and widespread mycophagous soil protists. Soil Biol Biochem 94:10–18. https://doi.org/10.1016/j.soilbio.2015.11.010
Geisen S, Mitchell EAD, Wilkinson DM, Adl S, Bonkowski M, Brown MW, Fiore-Donno AM, Heger TJ, Jassey VEJ, Krashevska V, Lahr DJG, Marcisz K, Mulot M, Payne R, Singer D, Anderson OR, Charman DJ, Ekelund F, Griffiths BS, Rønn R, Smirnov A, Bass D, Belbahri L, Berney C, Blandenier Q, Chatzinotas A, Clarholm M, Dunthorn M, Feest A, Fernández LD, Foissner W, Fournier B, Gentekaki E, Hájek M, Helder J, Jousset A, Koller R, Kumar S, La Terza A, Lamentowicz M, Mazei Y, Santos SS, Seppey CVW, Spiegel FW, Walochnik J, Winding A, Lara E (2017) Soil protistology rebooted: 30 fundamental questions to start with. Soil Biol Biochem 111:94–103. https://doi.org/10.1016/j.soilbio.2017.04.001
Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernández LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E (2018) Soil protists: a fertile frontier in soil biology research. FEMS Microbiol Rev 42:293–323. https://doi.org/10.1093/femsre/fuy006
Geyer KM, Altrichter AE, Takacs-Vesbach CD, Van Horn DJ, Gooseff MN, Barrett JE (2014) Bacterial community composition of divergent soil habitats in a polar desert. FEMS Microbiol Ecol 89:490–494. https://doi.org/10.1111/1574-6941.12306
Giangaspero A, Marangi M, Koehler AV, Papini R, Normanno G, Lacasella V, Lonigro A, Gasser RB (2015) Molecular detection of Cyclospora in water, soil, vegetables and humans in southern Italy signals a need for improved monitoring by health authorities. Int J Food Microbiol 211:95–100. https://doi.org/10.1016/j.ijfoodmicro.2015.07.002
Guo W, Andersen MN, Qi X, Li P, Li Z, Fan X, Zhou Y (2017) Effects of reclaimed water irrigation and nitrogen fertilization on the chemical properties and microbial community of soil. J Integr Agric 16:679–690. https://doi.org/10.1016/S2095-3119(16)61391-6
Guo W, Qi X, Xiao Y, Li P, Andersen MN, Zhang Y, Zhao Z (2018) Effects of reclaimedwater irrigation on microbial diversity and composition of soil with reducing nitrogen fertilization. Water Switz 10:1–16. https://doi.org/10.3390/w10040365
Hirsch PR, Jhurreea D, Williams JK, Murray PJ, Scott T, Misselbrook TH, Goulding KWT, Clark IM (2017) Soil resilience and recovery: rapid community responses to management changes. Plant Soil 412:283–297. https://doi.org/10.1007/s11104-016-3068-x
Huang Z, Xu Z, Chen C (2008) Effect of mulching on labile soil organic matter pools, microbial community functional diversity and nitrogen transformations in two hardwood plantations of subtropical Australia. Appl Soil Ecol 40:229–239. https://doi.org/10.1016/j.apsoil.2008.04.009
Huang F, Liu Z, Mou H, Li J, Zhang P, Jia Z (2019) Impact of farmland mulching practices on the soil bacterial community structure in the semiarid area of the loess plateau in China. Eur J Soil Biol 92:8–15. https://doi.org/10.1016/j.ejsobi.2019.04.001
Ibekwe AM, Gonzalez-Rubio A, Suarez DL (2018) Impact of treated wastewater for irrigation on soil microbial communities. Sci Total Environ 622–623:1603–1610. https://doi.org/10.1016/j.scitotenv.2017.10.039
Inbar Y (2007) New standards for treated wastewater reuse in Israel. In: Zaidi MK (ed) Wastewater Reuse--Risk Assessment, Decision-Making and Environmental Security. Springer Netherlands, Dordrecht, pp 291–296
Kader MA, Senge M, Mojid MA, Nakamura K (2017) Mulching type-induced soil moisture and temperature regimes and water use efficiency of soybean under rain-fed condition in Central Japan. Int Soil Water Conserv Res 5:302–308. https://doi.org/10.1016/j.iswcr.2017.08.001
Kantor RS, Miller SE, Nelson KL (2019) The water microbiome through a pilot scale advanced treatment facility for direct potable reuse. Front Microbiol 10:993. https://doi.org/10.3389/fmicb.2019.00993
Kassambara A (2017) Ggpubr: “ggplot2” based publication ready plots
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2012) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41:e1–e1. https://doi.org/10.1093/nar/gks808
Kramer S, Dibbern D, Moll J, Huenninghaus M, Koller R, Krueger D, Marhan S, Urich T, Wubet T, Bonkowski M, Buscot F, Lueders T, Kandeler E (2016) Resource partitioning between bacteria, fungi, and protists in the detritusphere of an agricultural soil. Front Microbiol 7. https://doi.org/10.3389/fmicb.2016.01524
Krashevska V, Maraun M, Ruess L, Scheu S (2010) Carbon and nutrient limitation of soil microorganisms and microbial grazers in a tropical montane rain forest. Oikos 119:1020–1028. https://doi.org/10.1111/j.1600-0706.2009.18169.x
Kulmatiski A, Beard KH (2011) Long-term plant growth legacies overwhelm short-term plant growth effects on soil microbial community structure. Soil Biol Biochem 43:823–830. https://doi.org/10.1016/j.soilbio.2010.12.018
Levy-Booth DJ, Prescott CE, Grayston SJ (2014) Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems. Soil Biol Biochem 75:11–25. https://doi.org/10.1016/j.soilbio.2014.03.021
Li F-M, Song Q-H, Jjemba PK, Shi Y-C (2004) Dynamics of soil microbial biomass C and soil fertility in cropland mulched with plastic film in a semiarid agro-ecosystem. Soil Biol Biochem 36:1893–1902. https://doi.org/10.1016/j.soilbio.2004.04.040
Li B, Cao Y, Guan X, Li Y, Hao Z, Hu W, Chen L (2019) Microbial assessments of soil with a 40-year history of reclaimed wastewater irrigation. Sci Total Environ 651:696–705. https://doi.org/10.1016/j.scitotenv.2018.09.193
Muñoz K, Buchmann C, Meyer M, Schmidt-Heydt M, Steinmetz Z, Diehl D, Thiele-Bruhn S, Schaumann GE (2017) Physicochemical and microbial soil quality indicators as affected by the agricultural management system in strawberry cultivation using straw or black polyethylene mulching. Appl Soil Ecol 113:36–44. https://doi.org/10.1016/j.apsoil.2017.01.014
Obayomi O, Bernstein N, Edelstein M, Vonshak A, Ghazayarn L, Ben-Hur M, Tebbe CC, Gillor O (2018) Importance of soil texture to the fate of pathogens introduced by irrigation with treated wastewater. Sci Total Environ. https://doi.org/10.1016/j.scitotenv.2018.10.378
Obayomi O, Ghazaryan L, Ben-Hur M, Edelstein M, Vonshak A, Safi J, Bernstein N, Gillor O (2019) The fate of pathogens in treated wastewater-soil-crops continuum and the effect of physical barriers. Sci Total Environ 681:339–349. https://doi.org/10.1016/j.scitotenv.2019.04.378
Okie JG, Van Horn DJ, Storch D, Barrett JE, Gooseff MN, Kopsova L, Takacs-Vesbach CD (2015) Niche and metabolic principles explain patterns of diversity and distribution: theory and a case study with soil bacterial communities. Proc R Soc B Biol Sci 282:20142630. https://doi.org/10.1098/rspb.2014.2630
Olsen SR (1954) Estimation of available phosphorus in soils by extraction with sodium bicarbonate. U.S. Dept. of Agriculture, Washington, D.C.
Orlofsky E, Bernstein N, Sacks M, Vonshak A, Benami M, Kundu A, Maki M, Smith W, Wuertz S, Shapiro K, Gillor O (2016) Comparable levels of microbial contamination in soil and on tomato crops after drip irrigation with treated wastewater or potable water. Agric Ecosyst Environ 215:140–150. https://doi.org/10.1016/j.agee.2015.08.008
Qi Y, Yang X, Pelaez AM, Lwanga EH, Beriot N, Gertsen H, Garbeva P, Geissen V (2018) Macro- and micro- plastics in soil-plant system: effects of plastic mulch film residues on wheat (Triticum aestivum) growth. Sci Total Environ 645:1048–1056. https://doi.org/10.1016/j.scitotenv.2018.07.229
R Core Team (2018) R: A language and environment for statistical computing
Rath KM, Fierer N, Murphy DV, Rousk J (2019) Linking bacterial community composition to soil salinity along environmental gradients. ISME J 13:836–846. https://doi.org/10.1038/s41396-018-0313-8
Schirmel J, Albert J, Kurtz MP, Muñoz K (2018) Plasticulture changes soil invertebrate assemblages of strawberry fields and decreases diversity and soil microbial activity. Appl Soil Ecol 124:379–393. https://doi.org/10.1016/j.apsoil.2017.11.025
Steinmetz Z, Wollmann C, Schaefer M, Buchmann C, David J, Tröger J, Muñoz K, Frör O, Schaumann GE (2016) Plastic mulching in agriculture. Trading short-term agronomic benefits for long-term soil degradation? Sci Total Environ 550:690–705. https://doi.org/10.1016/j.scitotenv.2016.01.153
Strauss SL, Kluepfel DA (2015) Anaerobic soil disinfestation: a chemical-independent approach to pre-plant control of plant pathogens. J Integr Agric 14:2309–2318. https://doi.org/10.1016/S2095-3119(15)61118-2
Tripathi BM, Stegen JC, Kim M, Dong K, Adams JM, Lee YK (2018) Soil pH mediates the balance between stochastic and deterministic assembly of bacteria. ISME J 12:1072–1083. https://doi.org/10.1038/s41396-018-0082-4
Urbano VR, Mendonça TG, Bastos RG, Souza CF (2017) Effects of treated wastewater irrigation on soil properties and lettuce yield. Agric Water Manag 181:108–115. https://doi.org/10.1016/j.agwat.2016.12.001
USEPA (2012) Guidelines for water reuse 2012. Office of Water Management, Washington, DC
WHO (2006) Safe use of wastewater , excreta and greywater, third. World Health Organization, Geneva
Zhao F, Xu K (2016) Biodiversity patterns of soil ciliates along salinity gradients. Eur J Protistol 53:1–10. https://doi.org/10.1016/j.ejop.2015.12.006