The MicroRNA Spectrum in 12 Body Fluids

Clinical Chemistry - Tập 56 Số 11 - Trang 1733-1741 - 2010
Jessica A. Weber1, David Baxter1, Shile Zhang1, David Huang1, Kuo‐How Huang2, Ming‐Jen Lee3,2, David J. Galas1,4, Kai Wang1
1Institute for Systems Biology, 1441 North 34th St., Seattle, WA 98103
2Department of Urology
3Department of Neurology, National Taiwan University, Taipei, Taiwan, Republic of China
4University of Luxembourg, Luxembourg

Tóm tắt

BACKGROUND MicroRNAs (miRNAs) are small, noncoding RNAs that play an important role in regulating various biological processes through their interaction with cellular messenger RNAs. Extracellular miRNAs in serum, plasma, saliva, and urine have recently been shown to be associated with various pathological conditions including cancer. METHODS With the goal of assessing the distribution of miRNAs and demonstrating the potential use of miRNAs as biomarkers, we examined the presence of miRNAs in 12 human body fluids and urine samples from women in different stages of pregnancy or patients with different urothelial cancers. Using quantitative PCR, we conducted a global survey of the miRNA distribution in these fluids. RESULTS miRNAs were present in all fluids tested and showed distinct compositions in different fluid types. Several of the highly abundant miRNAs in these fluids were common among multiple fluid types, and some of the miRNAs were enriched in specific fluids. We also observed distinct miRNA patterns in the urine samples obtained from individuals with different physiopathological conditions. CONCLUSIONS MicroRNAs are ubiquitous in all the body fluid types tested. Fluid type–specific miRNAs may have functional roles associated with the surrounding tissues. In addition, the changes in miRNA spectra observed in the urine samples from patients with different urothelial conditions demonstrates the potential for using concentrations of specific miRNAs in body fluids as biomarkers for detecting and monitoring various physiopathological conditions.

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Tài liệu tham khảo

Nelson, 2003, The microRNA world: small is mighty, Trends Biochem Sci, 28, 534, 10.1016/j.tibs.2003.08.005

Kuokkanen, 2010, Genomic profiling of MicroRNAs and messenger RNAs reveals hormonal regulation in microRNA expression in human endometrium, Biol Reprod, 82, 791, 10.1095/biolreprod.109.081059

Mishima, 2007, RT-PCR-based analysis of microRNA (miR-1 and -124) expression in mouse CNS, Brain Res, 1131, 37, 10.1016/j.brainres.2006.11.035

Chang, 2004, miR-122, a mammalian liver-specific microRNA, is processed from HCR mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1, RNA Biol, 1, 106, 10.4161/rna.1.2.1066

Chen, 2009, MicroRNA signatures in liver diseases, World J Gastroenterol, 15, 1665, 10.3748/wjg.15.1665

Nimmo, 2009, An elegant miRror: microRNAs in stem cells, developmental timing and cancer, Chromosoma, 118, 405, 10.1007/s00412-009-0210-z

Shi, 2009, MicroRNA in cell differentiation and development, Sci China C Life Sci, 52, 205, 10.1007/s11427-009-0040-5

Hebert, 2009, Alterations of the microRNA network cause neurodegenerative disease, Trends Neurosci, 32, 199, 10.1016/j.tins.2008.12.003

Mocellin, 2009, Oncomirs: from tumor biology to molecularly targeted anticancer strategies, Minirev Med Chem, 9, 70, 10.2174/138955709787001802

Xiao, 2009, MicroRNA control in the immune system: basic principles, Cell, 136, 26, 10.1016/j.cell.2008.12.027

Sun, 2008, Small RNAs in development and disease, J Am Acad Dermatol, 59, 725, 10.1016/j.jaad.2008.08.017

Cortez, 2009, MicroRNA identification in plasma and serum: a new tool to diagnose and monitor diseases, Exp Opin Biol Ther, 9, 703, 10.1517/14712590902932889

Hanke, A robust methodology to study urine microRNA as tumor marker: microRNA-126 and microRNA-182 are related to urinary bladder cancer, Urol Oncol

Zubakov, 2010, MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation, Int J Leg Med, 124, 217, 10.1007/s00414-009-0402-3

Park, 2009, Salivary microRNA: discovery, characterization, and clinical utility for oral cancer detection, Clin Cancer Res, 15, 5473, 10.1158/1078-0432.CCR-09-0736

Huang, 2010, Plasma microRNAs are promising novel biomarkers for early detection of colorectal cancer, Int J Cancer, 127, 118, 10.1002/ijc.25007

Rosell, 2009, Circulating MicroRNA signatures of tumor-derived exosomes for early diagnosis of non-small-cell lung cancer, Clin Lung Cancer, 10, 8, 10.3816/CLC.2009.n.001

Wang, 2009, Circulating microRNAs, potential biomarkers for drug-induced liver injury, Proc Natl Acad Sci U S A, 106, 4402, 10.1073/pnas.0813371106

Gilad, 2008, Serum microRNAs are promising novel biomarkers, PLoS ONE, 3, e3148, 10.1371/journal.pone.0003148

Alvarez, 2007, Bladder cancer biomarkers: current developments and future implementation, Curr Opinion Urol, 17, 341, 10.1097/MOU.0b013e3282c8c72b

Kikuchi, 2004, Tumor markers of urinary tract carcinoma [in Japanese], Rinsho Byori, 52, 371

Simpson, 2009, Exosomes: proteomic insights and diagnostic potential, Exp Rev Proteom, 6, 267, 10.1586/epr.09.17

Rabinowits, 2009, Exosomal microRNA: a diagnostic marker for lung cancer, Clin Lung Cancer, 10, 42, 10.3816/CLC.2009.n.006

Lotvall, 2007, Cell to cell signalling via exosomes through esRNA, Cell Adh Migr, 1, 156, 10.4161/cam.1.3.5114

Card, 2008, Oct4/Sox2-regulated miR-302 targets cyclin D1 in human embryonic stem cells, Mol Cell Biol, 28, 6426, 10.1128/MCB.00359-08

Zovoilis, 2008, Multipotent adult germline stem cells and embryonic stem cells have similar microRNA profiles, Mol Hum Reprod, 14, 521, 10.1093/molehr/gan044

Liang, 2007, Characterization of microRNA expression profiles in normal human tissues, BMC Genom, 8, 166, 10.1186/1471-2164-8-166

Smith, 2009, Management of upper tract urothelial carcinoma, Adv Urol, 492462

Nguyen, 2008, Defining the role of NMP22 in bladder cancer surveillance, World J Urol, 26, 51, 10.1007/s00345-007-0226-z

Wang, Export of microRNAs and microRNA-protective protein by mammalian cells, Nucl Acids Res

Valadi, 2007, Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells, Nat Cell Biol, 9, 654, 10.1038/ncb1596