Structure and activity of soil-inhabiting methanotrophic communities in northern forest of Japan

Soil Biology and Biochemistry - Tập 41 - Trang 403-408 - 2009
Masazumi Tsutsumi1, Hisaya Kojima1, Shigeru Uemura2, Kiyomi Ono1, Akihiro Sumida1, Toshihiko Hara1, Manabu Fukui1
1The Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo 060-0819, Japan
2Field Science Center for Northern Biosphere, Hokkaido University, Kita-11, Nishi-10, Kita-ku, Sapporo 060-0811, Japan

Tài liệu tham khảo

Bodelier, 2004, Nitrogen as a regulatory factor of methane oxidation in soils and sediments FEMS, Microbiology Ecology, 47, 265, 10.1016/S0168-6496(03)00304-0

Bourne, 2001, Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils, Applied and Environmental Microbiology, 67, 3802, 10.1128/AEM.67.9.3802-3809.2001

Curry, 2007, Modeling the soil consumption of atmospheric methane at the global scale, Global Biogeochemical Cycles, 21, GB4012, 10.1029/2006GB002818

Dunfield, 1999, High-affinity methane oxidation by a soil enrichment culture containing a type II methanotroph, Applied and Environmental Microbiology, 65, 1009, 10.1128/AEM.65.3.1009-1014.1999

Dutaur, 2007, A global inventory of the soil CH4 sink, Global Biogeochemical Cycles, 21, GB4013, 10.1029/2006GB002734

Hanson, 1996, Methanotrophic bacteria, Microbiological Reviews, 60, 439, 10.1128/mr.60.2.439-471.1996

Henckel, 2000, Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane, Applied and Environmental Microbiology, 66, 1801, 10.1128/AEM.66.5.1801-1808.2000

Holmes, 1995, Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related, FEMS Microbiology Letters, 132, 203, 10.1111/j.1574-6968.1995.tb07834.x

Holmes, 1999, Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake, Applied and Environmental Microbiology, 65, 3312, 10.1128/AEM.65.8.3312-3318.1999

Ishii, 2008, Removal of understory dwarf bamboo (Sasa kurilensis) induces changes in water-relations characteristics of overstory Betula ermanii trees, Journal of Forest Research, 13, 101, 10.1007/s10310-007-0058-0

Kato, 2005, Stand structure and light conditions of a conifer-hardwood mixed forest in northern Hokkaido, Japan, Transactions of the Meeting in Hokkaido Branch of the Japanese Forestry Society, 53, 58

Knief, 2003, Diversity and activity of methanotrophic bacteria in different upland soils, Applied and Environmental Microbiology, 69, 6703, 10.1128/AEM.69.11.6703-6714.2003

Knief, 2005, Diversity of methanotrophic bacteria in tropical upland soils under different land uses, Applied and Environmental Microbiology, 71, 3826, 10.1128/AEM.71.7.3826-3831.2005

Knief, 2006, The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration, Environmental Microbiology, 8, 321, 10.1111/j.1462-2920.2005.00898.x

Kolb, 2005, Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils, Environmental Microbiology, 7, 1150, 10.1111/j.1462-2920.2005.00791.x

Lau, 2007, Molecular characterization of methanotrophic communities in forest soils that consume atmospheric methane, FEMS Microbiology Ecology, 60, 490, 10.1111/j.1574-6941.2007.00308.x

Mancinelli, 1995, The regulation of methane oxidation in soil, Annual Review of Microbiology, 49, 581, 10.1146/annurev.mi.49.100195.003053

Muyzer, 1996, Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA – a new molecular approach to analyze the genetic diversity of mixed microbial communities

Nakano, 2004, Methane consumption and soil respiration by a birch forest soil in West Siberia, Tellus, 56B, 223, 10.3402/tellusb.v56i3.16421

Rodhe, 1990, A comparison of the contribution of various gases to the greenhouse effect, Science, 248, 1217, 10.1126/science.248.4960.1217

Rosenkranz, 2006, N2O, NO and CH4 exchange, and microbial N turnover over a Mediterranean pine forest soil, Biogeosciences, 3, 121, 10.5194/bg-3-121-2006

Singh, 2007, Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria, Applied and Environmental Microbiology, 73, 5153, 10.1128/AEM.00620-07

Smith, 2000, Oxidation of atmospheric methane in northern European soils, comparison with other ecosystems, and uncertainties in the global terrestrial sink, Global Change Biology, 6, 791, 10.1046/j.1365-2486.2000.00356.x

Steinkamp, 2001, Methane oxidation by soils of an N limited and N fertilized spruce forest in the Black Forest, Germany, Soil Biology & Biochemistry, 33, 145, 10.1016/S0038-0717(00)00124-3

Steinkamp, 2001, Improved method for detection of methanotrophic bacteria in forest soils by PCR, Current Microbiology, 42, 316, 10.1007/s002840010223

Tamura, 2007, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Molecular Biology and Evolution, 24, 1596, 10.1093/molbev/msm092

Tang, 2006, Soil-atmospheric exchange of CO2, CH4, and N2O in three subtropical forest ecosystems in southern China, Global Change Biology, 12, 546, 10.1111/j.1365-2486.2006.01109.x

Tappeiner, 1975, Undergrowth vegetation effects on the nutrient content of litterfall and soils in red pine and birch stands in northern Minnesota, Ecology, 56, 1193, 10.2307/1936159