Remediation of acidic soils in copper sulfide mines through combined plant amendments and their effects on soil bacterial community structure

Abaga, N. O. Z., Dousset, S., Mbengue, S., & Munier-Lamy, C. (2014). Is vetiver grass of interest for the remediation of Cu and Cd to protect marketing gardens in Burkina Faso? Chemosphere, 113, 42–47. https://doi.org/10.1016/j.chemosphere.2014.04.010 Abdul, H. S., Abdullah, R., Karsani, S. A., Osman, N., Panhwar, Q. A., & Ishak, C. F. (2018). Influence of soil amendments on the growth and yield of rice in acidic soil. Agronomy, 8(9), 165. https://doi.org/10.3390/agronomy8090165 Afonso, T. F., Demarco, C. F., Pieniz, S., Quadro, M. S., Camargo, F. A., & Andreazza, R. (2020). Bioprospection of indigenous flora grown in copper mining tailing area for phytoremediation of metals. Journal of Environmental Management, 256, 109953. https://doi.org/10.1016/j.jenvman.2019.109953 Álvarez-Ayuso, E., & Abad-Valle, P. (2021). Application of different alkaline materials as polluted soil amendments: A comparative assessment of their impact on trace element mobility and microbial functions. Ecotoxicology and Environmental Safety, 227, 112927. https://doi.org/10.1016/j.ecoenv.2021.112927 Benidire, L., Pereira, S., Aboudrar, W., Hafidi, M., Castro, P., & Boularbah, A. (2022). Remediation of metal-contaminated mine tailings by the application of organic and mineral amendments. Journal of Soils and Sediments, 1–14. https://doi.org/10.1007/s11368-021-03081-z Chen, S., Zhou, Y., Chen, Y., & Gu, J. (2018). fastp: An ultra-fast all-in-one FASTQ preprocessor. Bioinformatics, 34(17), i884–i890. https://doi.org/10.1093/bioinformatics/bty560 Chen, G., Shah, K. J., Shi, L., Chiang, P. C., & You, Z. (2019). Red soil amelioration and heavy metal immobilization by a multi-element mineral amendment: Performance and mechanisms. Environmental Pollution, 254, 112964. https://doi.org/10.1016/j.envpol.2019.112964 Clemente, R., Walker, D., Pardo, T., Martínez-Fernández, D., & Bernal, M. (2012). The use of a halophytic plant species and organic amendments for the remediation of a trace elements-contaminated soil under semi-arid conditions. Journal of Hazardous Materials, 223, 63–71. https://doi.org/10.1016/j.jhazmat.2012.04.048 Cottes, J., Saquet, A., Palayret, L., Husson, O., Beghin, R., Allen, D., & Guiresse, M. (2020). Effects of soil redox potential (Eh) and pH on growth of sunflower and wheat. Archives of Agronomy and Soil Science, 66(4), 473–487. https://doi.org/10.1080/03650340.2019.1622096 Cui, H., Fan, Y., Yang, J., Xu, L., & Zhou, J. (2016). In situ phytoextraction of copper and cadmium and its biological impacts in acidic soil. Chemosphere, 161, 233–241. https://doi.org/10.1016/j.chemosphere.2016.07.022 Danish, M., Tayyab, M., Akhtar, A., Altaf, A. A., Kausar, S., Ullah, S., & Iqbal, M. (2021). Effect of soft template variation on the synthesis, physical, and electrochemical properties of Mn3O4 nanomaterial. Inorganic and Nano-Metal Chemistry, 51(3), 359–365. https://doi.org/10.1080/24701556.2020.1790000 De, C. L., Cesco, S., Mimmo, T., Pii, Y., Valentinuzzi, F., Melo, G. W., & Brunetto, G. (2020). Iron fertilization to enhance tolerance mechanisms to copper toxicity of ryegrass plants used as cover crop in vineyards. Chemosphere, 243, 125298. https://doi.org/10.1016/j.chemosphere.2019.125298 Drzewiecka, D. (2016). Significance and roles of Proteus spp. bacteria in natural environments. Microbial Ecology, 72, 741–758. https://doi.org/10.1007/s00248-015-0720-6 Etika, A., & Hasan, R. (2016). Effect of Mineral and Humic Substances on Tailing Soil Properties and Nutrient Uptake by Pennisetum purpureum Schumach. Journal of Tropical Soils, 20(2), 101–109. https://doi.org/10.5400/jts.2015.20.2.101 Flores-Alvarez, J. L., Ladd, B., Velez-Azañero, A., Mola, U. L., & Bonser, S. (2018). Using knowledge of plant persistence traits to optimize strategies for post-mine ecological restoration on the Peruvian Altiplano. Mountain Research and Development, 38(2), 135–142. https://doi.org/10.1659/MRD-JOURNAL-D-17-00088.1 Fu, Q., Abadie, M., Blaud, A., Carswell, A., Misselbrook, T. H., Clark, I. M., & Hirsch, P. R. (2020). Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil. Biology and Fertility of Soils, 56, 185–194. https://doi.org/10.1007/s00374-019-01411-5 Furtado, J. A., García, A. C., Lima, E. S. A., Souza, C. C., & Amaral, N. M. (2022). Effect of short-term pig slurry amendment of soil on humified organic matter and its relationship with the dynamics of heavy metals and metals uptake by plants. Journal of Environmental Science and Health, Part A, 57(11), 958–969. https://doi.org/10.1080/10934529.2022.2132795 Gill, R., Naeem, M., Ansari, A.A., & Gill, S.S. (2023). Phytoremediation and Management of Environmental Contaminants: An Overview. Phytoremediation: Management of Environmental Contaminants, Volume 7, 3–14. https://doi.org/10.1007/978-3-031-17988-4_1 Halecki, W., López-Hernández, N. A., Koźmińska, A., Ciarkowska, K., & Klatka, S. (2022). A Circular Economy Approach to Restoring Soil Substrate Ameliorated by Sewage Sludge with Amendments. International Journal of Environmental Research and Public Health, 19(9), 5296. https://doi.org/10.3390/ijerph19095296 He, D., Cui, J., Gao, M., Wang, W., Zhou, J., Yang, J., & Peng, Y. (2019). Effects of soil amendments applied on cadmium availability, soil enzyme activity, and plant uptake in contaminated purple soil. Science of the Total Environment, 654(1), 1364–1371. https://doi.org/10.1016/j.scitotenv.2018.11.059 He, H., Tam, N., Yao, A., Qiu, R., Li, W. C., & Ye, Z. (2017). Growth and Cd uptake by rice (Oryza sativa) in acidic and Cd-contaminated paddy soils amended with steel slag. Chemosphere, 189(21), 122–125. https://doi.org/10.1016/j.chemosphere.2017.09.069 Hu, B., Liang, D., Liu, J., Lei, L., & Yu, D. (2014). Transformation of heavy metal fractions on soil urease and nitrate reductase activities in copper and selenium co-contaminated soil. Ecotoxicology and Environmental Safety, 110, 41–48. https://doi.org/10.1016/j.ecoenv.2014.08.007 Hu, X., Wang, J., Lv, Y., Liu, X., Chong, J., Cui, X., & Zhu, X. (2021). Effects of heavy metals/metalloids and soil properties on microbial communities in farmland in the vicinity of a metals smelter. Frontiers in Microbiology, 12, 707786. https://doi.org/10.3389/fmicb.2021.707786 Jing, F., Chen, C., Chen, X., Liu, W., Wen, X., & Hu, S. (2021). Cadmium transport in red paddy soils amended with wheat straw biochar. Environmental Monitoring and Assessment, 193(7), 381. https://doi.org/10.1007/s10661-021-09162-3 Kahr, G., & Madsen, F. T. (1995). Determination of the cation exchange capacity and the surface area of bentonite, illite and kaolinite by methylene blue adsorption. Applied Clay Science, 9(5), 327–336. https://doi.org/10.1016/0169-1317(94)00028-O Kalam, S., Basu, A., Ahmad, I., Sayyed, R. Z., & EI-Enshasy, H.A., Dailin, D.J., & Suriani, N.L. (2020). Recent understanding of soil acidobacteria and their ecological significance: A critical review. Frontiers in Microbiology, 11, 580024. https://doi.org/10.3389/fmicb.2020.580024 Liang, J., Tang, S., Gong, J., Zeng, J., Tang, W., Song, B., & Luo, Y. (2019). Responses of enzymatic activity and microbial communities to biochar/compost amendment in sulfamethoxazole polluted wetland soil. Journal of Hazardous Materials, 385, 121533. https://doi.org/10.1016/j.jhazmat.2019.121533 Li, J., & Xu, Y. (2018). Effects of clay combined with moisture management on Cd immobilization and fertility index of polluted rice field. Ecotoxicology and Environmental Safety, 158, 182–186. https://doi.org/10.1016/j.ecoenv.2018.04.031 Liu, G., Feng, M., Tayyab, M., Gong, J., Zhang, M., Yang, M., & Lin, K. (2021a). Direct and efficient reduction of perfluorooctanoic acid using bimetallic catalyst supported on carbon. Journal of Hazardous Materials, 412, 125224. https://doi.org/10.1016/j.jhazmat.2021.125224 Liu, L., Li, W., Song, W., & Guo, M. (2018). Remediation techniques for heavy metal-contaminated soils: Principles and applicability. Science of the Total Environment, 633, 206–219. https://doi.org/10.1016/j.scitotenv.2018.03.161 Liu, W., Zhang, Y., & Jia, Y. (2019). Effect of vermicompost on the alfalfa remediation improvement in heavy metal polluted farmland. Environmental Pollution and Control, 41(2), 170–174. https://doi.org/10.15985/j.cnki.1001-3865.2019.02.009 (in Chinese) Liu, Y., Zhu, Q., Tayyab, M., Zhou, L., Lei, J., & Zhang, J. (2021b). Single-Atom Pt Loaded Zinc Vacancies ZnO–ZnS Induced Type-V Electron Transport for Efficiency Photocatalytic H2 Evolution. Solar RRL, 5(11), 2100536. https://doi.org/10.1002/solr.202100536 Lu, H., Wu, Y., Liang, P., Song, Q., Zhang, H., Wu, J., & Dong, C. X. (2020). Alkaline amendments improve the health of soils degraded by metal contamination and acidification: Crop performance and soil bacterial community responses. Chemosphere, 257(10), 127309. https://doi.org/10.1016/j.chemosphere.2020.127309 Magoč, T., & Salzberg, S. L. (2011). FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics, 27(21), 2957–2963. https://doi.org/10.1093/bioinformatics/btr507 Mulenga, C., Clarke, C., & Meincken, M. (2023). Effect of copper mining pollution-induced heavy metal toxicities on B. longifolia Benth wood cell characteristics. European Journal of Forest Research, 142(2), 317–330. https://doi.org/10.1007/s10342-022-01524-x Nelson, D.W., & Sommers, L.E. (1983). Total carbon, organic carbon, and organic matter. Methods of soil analysis: Part 2 chemical and microbiological properties, 9, 539–579. https://doi.org/10.2134/agronmonogr9.2.2ed.c29 Nie, C., Yang, X., Niazi, N. K., Xu, X., Wen, Y., Rinklebe, J., & Wang, H. (2018). Impact of sugarcane bagasse-derived biochar on heavy metal availability and microbial activity: A field study. Chemospher, 200, 274–282. https://doi.org/10.1016/j.chemosphere.2018.02.134 Patra, D. K., Acharya, S., Pradhan, C., & Patra, H. K. (2021). Poaceae plants as potential phytoremediators of heavy metals and eco-restoration in contaminated mining sites. Environmental Technology & Innovation, 21, 101293. https://doi.org/10.1016/j.eti.2020.101293 Pouresmaieli, M., Ataei, M., Forouzandeh, P., Azizollahi, P., & Mahmoudifard, M. (2022). Recent progress on sustainable phytoremediation of heavy metals from soil. Journal of Environmental Chemical Engineering, 108482. https://doi.org/10.1016/J.JECE.2022.108482 Punia, A. (2021). Role of temperature, wind, and precipitation in heavy metal contamination at copper mines: A review. Environmental Science and Pollution Research, 28(4), 4056–4072. https://doi.org/10.1007/s11356-020-11580-8 Shan, S., Guo, Z., Lei, P., Chen, W., Wu, M., Fu, Z., & Wu, L. (2018). Impacts of a compound amendment on Cd immobilization, enzyme activities and crop uptake in acidic Cd-contaminated paddy soils. Bulletin of Environmental Contamination and Toxicology, 101(2), 243–249. https://doi.org/10.1007/s00128-018-2379-4 Sheremet, A., Jones, G. M., Jarett, J., Bowers, R. M., Bedard, I., Culham, C., & Dunfield, P. F. (2020). Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil. Environmental Microbiology, 22(8), 3143–3157. https://doi.org/10.1111/1462-2920.15054 Sun, X., Li, Z., Wu, L., Christie, P., Luo, Y., & Fornara, D. A. (2019). Root-induced soil acidification and cadmium mobilization in the rhizosphere of Sedum plumbizincicola: Evidence from a high-resolution imaging study. Plant and Soil, 436, 267–282. https://doi.org/10.1007/s11104-018-03930-w Sun, Y., Sun, G., Xu, Y., Wang, L., & Lin, D. (2013). Assessment of sepiolite for immobilization of cadmium-contaminated soils. Geoderma, 193, 149–155. https://doi.org/10.1016/j.geoderma.2012.07.012 Tayyab, M., Liu, Y., Liu, Z., Pan, L., Xu, Z., Yue, W., Zhou, L., Lei, J., & Zhang, J. (2022a). One-pot in-situ hydrothermal synthesis of ternary In2S3/Nb2O5/Nb2C Schottky/S-scheme integrated heterojunction for efficient photocatalytic hydrogen production. Journal of Colloid and Interface Science, 628, 500–512. https://doi.org/10.1016/j.jcis.2022.08.071 Tayyab, M., Liu, Y., Liu, Z., Xu, Z., Yue, W., Zhou, L., Lei, J., & Zhang, J. (2023a). A new breakthrough in photocatalytic hydrogen evolution by amorphous and chalcogenide enriched cocatalysts. Chemical Engineering Journal, 455, 140601. https://doi.org/10.1016/j.cej.2022.140601 Tayyab, M., Liu, Y., Min, S., Irfan, R. M., Zhu, Q., Zhou, L., Lei, J., & Zhang, J. (2022b). Simultaneous hydrogen production with the selective oxidation of benzyl alcohol to benzaldehyde by a noble-metal-free photocatalyst VC/CdS nanowires. Chinese Journal of Catalysis, 43(4), 1165–1175. https://doi.org/10.1016/S1872-2067(21)63997-9 Tayyab, M., Liu, Y., Xu, Z., Ama,n S., Yue, W., Irfan, R.M., Zhou, L., & Zhang, J. (2023). Integration of Redox Cocatalysts for Photocatalytic Hydrogen Evolution. In X. Wang, M. Anpo, & X. Fu (Eds.), UV-Visible Photocatalysis for Clean Energy Production and Pollution Remediation (1th ed., pp. 93–107). https://doi.org/10.1002/9783527837991.ch7 Wang, L., Ye, X., Hu, H., Du, J., Xi, Y., Shen, Z., & Chen, D. (2021). Soil bacterial community triggered by organic matter inputs supports a high-yielding pear production. SOIL Discussions, 1-25. 10.5194/soil-8-337-2022 Wang, P., Sun, Z., Hu, Y., & Cheng, H. (2019). Leaching of heavy metals from abandoned mine tailings brought by precipitation and the associated environmental impact. Science of the Total Environment, 695, 133893. https://doi.org/10.1016/j.scitotenv.2019.133893 Wang, S., Sun, L., Ling, N., Zhu, C., Chi, F., Li, W., & Wei, D. (2020). Exploring soil factors determining composition and structure of the bacterial communities in saline-alkali soils of Songnen Plain. Frontiers in Microbiology, 10, 2902. https://doi.org/10.3389/fmicb.2019.02902 Wang, T., Sun, H., Ren, X., Li, B., & Mao, H. (2017). Evaluation of biochars from different stock materials as carriers of bacterial strain for remediation of heavy metal-contaminated soil. Scientific Reports, 7(1), 12114. https://doi.org/10.1038/s41598-017-12503-3 Worlanyo, A. S., & Jiangfeng, L. (2021). Evaluating the environmental and economic impact of mining for post-mined land restoration and land-use A Review. Journal of Environmental Management, 279, 111623. https://doi.org/10.1016/j.jenvman.2020.111623 Xie, Y., Bu, H., Feng, Q., Wassie, M., Amee, M., Jiang, Y., & Chen, L. (2021). Identification of Cd-resistant microorganisms from heavy metal-contaminated soil and its potential in promoting the growth and Cd accumulation of bermudagrass. Environmental Research, 200, 111730. https://doi.org/10.1016/j.envres.2021.111730 Yang, X., Liu, J., McGrouther, K., Huang, H., Lu, K., Guo, X., & Wang, H. (2016). Effect of biochar on the extractability of heavy metals (Cd, Cu, Pb, and Zn) and enzyme activity in soil. Environmental Science and Pollution Research, 23, 974–984. https://doi.org/10.1007/s11356-015-4233-0 Ye, S., Wang, L., & Liu, T. (2022). Study of solidification and stabilization of heavy metals by passivators in heavy metal-contaminated soil. Open Chemistry, 20(1), 1–9. https://doi.org/10.1515/chem-2021-0101 Yi, X. U., Liang, X., Xu, Y. M., Xu, Q., Huang, Q., Wang, L., & Sun, Y. B. (2017). Remediation of heavy metal-polluted agricultural soils using clay minerals: A review. Pedosphere, 27(2), 193–204. https://doi.org/10.1016/S1002-0160(17)60310-2 Yuan, Q., Wang, P., Wang, X., Hu, B., & Tao, L. (2021). Phytoremediation of cadmium-contaminated sediment using Hydrilla verticillata and Elodea canadensis harbor two same keystone rhizobacteria Pedosphaeraceae and Parasegetibacter. Chemosphere, 286, 131648. https://doi.org/10.1016/j.chemosphere.2021.131648 Zhang, G., Liu, X., Gao, M., & Song, Z. (2020). Effect of Fe–Mn–Ce modified biochar composite on microbial diversity and properties of arsenic-contaminated paddy soils. Chemosphere, 250, 126249. https://doi.org/10.1016/j.chemosphere.2020.126249 Zhang, Y.B., & Sun, S. (2022). Study on the Reclamation and Ecological Reconstruction of Abandoned Land in Mining Area. IOP Conference Series: Earth and Environmental Science, 514(2). https://doi.org/10.1088/1755-1315/514/2/022073