Real‐Time Polymerase Chain Reaction

ChemBioChem - Tập 4 Số 11 - Trang 1120-1128 - 2003
Jochen Wilhelm1,2, Alfred Pingoud1
1Institut für Biochemie, FB08, Justus-Liebig-Universität Giessen, Heinrich-Buff-Ring 58, 35392 Giessen, Germany
2Institut für Pathologie, Klinikum der Justus-Liebig-Universität Giessen, Langhansstraße 10, 35392 Giessen, Germany,

Tóm tắt

Abstract

Real‐time PCR is the state‐of‐the‐art technique to quantify nucleic acids for mutation detection, genotyping and chimerism analysis. Since its development in the 1990s, many different assay formats have been developed and the number of real‐time PCR machines of different design is continuously increasing. This review provides a survey of the instruments and assay formats available and discusses the pros and cons of each. The principles of quantitative real‐time PCR and melting curve analysis are explained. The quantification algorithms with internal and external standardization are derived mathematically, and potential pitfalls for the data analysis are discussed. Finally, examples of applications of this extremely versatile technique are given that demonstrate the enormous impact of real‐time PCR on life sciences and molecular medicine.

Từ khóa


Tài liệu tham khảo

10.1101/gr.6.10.986

10.1038/nbt0993-1026

10.1093/nar/25.12.2516

10.1006/abio.1996.9916

10.1006/abio.1999.4217

10.1006/abio.2000.4753

10.1093/nar/17.11.4353

10.2144/97221bi01

10.2144/97221pf02

Wilhelm J., 2000, Clin. Chem., 46, 1738, 10.1093/clinchem/46.11.1738

Zuna J., 2002, BioTechniques, 33, 508, 10.2144/02333bm09

10.1016/0003-2697(66)90012-1

10.1006/abio.1995.1404

10.1006/abio.1996.9970

Jin X., 1994, Biophys. J., 66

Singer V. L., 1994, Biomed. Products, 19, 72

Morrison T. B., 1998, BioTechniques, 24, 954

10.1562/0031-8655(2001)0730585PPOFDD2.0.CO2

H. Zipper K. Lämmle C. Buta H. Brunner J. Bernhagen F. Vitzthum Proceedings of the Joint Annual Fall Meeting German Society for Biochemistry and Molecular Biology (GBM) & German Society for Experimental and Clinical Pharmacology and Toxicology (DGPT) 2002 DOI:10.1240/sav gbm 2002 h 000090.

10.1093/nar/gng045

10.1073/pnas.85.23.8790

10.1016/0958-1669(95)80016-6

10.1006/abio.1994.1134

10.1002/andp.19484370105

10.1016/0076-6879(92)11020-J

10.1093/nar/gng056

Dupont M., 2002, BioTechniques, 33, 158, 10.2144/02331md04

10.1016/S0002-9440(10)65650-7

10.1006/meth.2001.1265

Lay M. J., 1997, Clin. Chem., 43, 2262, 10.1093/clinchem/43.12.2262

10.1093/clinchem/44.3.482

10.1586/14737159.1.1.92

Wilhelm J., 2001, BioTechniques, 30, 1052, 10.2144/01305rr04

10.1099/ijs.0.02275-0

10.1073/pnas.88.16.7276

10.1101/gr.6.10.995

10.1016/S0167-7012(02)00113-6

10.1126/science.279.5354.1228

10.1038/nbt0198-49

10.1038/nbt0396-303

10.1038/11751

Whitcombe D., 1998, Clin. Chem., 44, 918, 10.1093/clinchem/44.5.918

10.1006/mcpr.2000.0321

10.1006/abio.2000.4534

10.1006/abio.2000.4824

10.1093/nar/29.6.e34

10.1006/abio.2000.4957

10.1128/AEM.69.3.1383-1390.2003

10.1038/sj.leu.2401801

10.1038/sj.leu.2401128

10.1016/S0006-291X(02)00478-3

Wilhelm J., 2003, BioTechniques, 34, 324, 10.2144/03342rr03

10.1006/meth.2001.1262

Pfaffl M. W., 2001, Nucleic Acids Res., 29, 10.1093/nar/29.9.e45

10.1073/pnas.87.7.2725

Goerke C., 2001, Clin. Diagn. Lab. Immunol., 8, 279, 10.1128/CDLI.8.2.279-282.2001

10.1016/S0009-9120(01)00281-8

Akey J. M., 2001, BioTechniques, 30, 358, 10.2144/01302tt05

Al‐Robaiy S., 2001, BioTechniques, 31, 1382, 10.2144/01316md06

Bernard P. S., 2000, Clin. Chem., 46, 147, 10.1093/clinchem/46.2.147

Ulvik A., 2001, Clin. Chem., 47, 2050, 10.1093/clinchem/47.11.2050

10.1093/nar/gnf125

10.1046/j.1537-2995.2003.00354.x

10.1002/(SICI)1522-2683(20000301)21:4<816::AID-ELPS816>3.0.CO;2-Y

10.1006/meth.2001.1269

10.1093/nar/30.6.1292

10.1677/jme.0.0250169

Brodman P. D., 2002, J. AOAC Int., 85, 646, 10.1093/jaoac/85.3.646

Norton D. M., 2002, J. AOAC Int., 85, 505, 10.1093/jaoac/85.2.505

10.1021/jf010173n

Locatelli G., 2000, Ital. J. Biochem., 49, 61

Ruiz‐Ponte C., 2000, Clin. Chem., 46, 1574, 10.1093/clinchem/46.10.1574

Chiang P. W., 1999, Genetics, 153, 1313, 10.1093/genetics/153.3.1313

10.1016/S0002-9440(10)64076-X

Krauter J., 2001, Hematol. J., 5, 369

10.1002/gcc.1100

Elmaagacli A. H., 2000, Ann. Hematol., 79, 424, 10.1007/s002770000169

Amabile M., 2001, Haematologica, 86, 252

10.1038/sj.bjc.6990289

Cheung I. Y., 2001, Clin. Cancer Res., 7, 1698

10.1515/CCLM.2001.061

Bieche I., 1999, Cancer Res., 59, 2759

10.1016/S0002-9440(10)65059-6

10.1373/49.2.219

Lyon E., 2001, Clin. Chem., 47, 844, 10.1093/clinchem/47.5.844

Wilhelm J., 1999, Biol. Chem., 380

10.1002/ijc.1568

Au W. Y., 2002, Haematologica, 87, 1109

10.1186/bcr456

10.1016/S0022-1759(01)00489-6

10.1016/S0022-1759(01)00502-6

10.1677/jme.0.0290023

10.3727/000000003783992315

10.1016/S0003-2697(02)00614-0

10.1182/blood.V98.2.422

Rickman D. S., 2001, Cancer Res., 61, 6885

10.1038/sj.onc.1205570

Shively L., 2003, BioTechniques, 34, 498, 10.2144/03343st01

10.1515/BC.2002.161

10.1038/sj.leu.2402856

Byrne P., 2002, BioTechniques, 32, 279, 10.2144/02322st01

10.1007/BF03165118

10.1089/152581601750289028

10.1016/S0379-0738(02)00026-9

Ye J., 2002, J. Forensic Sci., 47, 593

Andreasson H., 2002, BioTechniques, 33, 402, 10.2144/02332rr07

He L., 2002, Nucleic Acids Res., 30

10.1093/molehr/7.3.301

10.1046/j.1365-2125.2002.01693.x

Bullock G. C., 2002, Clin. Chem., 48, 2147, 10.1093/clinchem/48.12.2147

10.1016/S0732-8893(02)00505-9

10.1006/geno.2002.6851

Worm J., 2001, Clin. Chem., 47, 1183, 10.1093/clinchem/47.7.1183