Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident
Tóm tắt
Từ khóa
Tài liệu tham khảo
United Nations Scientific Committee on the Effects of Atomic Radiation (UNSCEAR) Sources and Effects of Ionizing Radiation: UNSCEAR 2008 Report to the General Assembly with Scientific Annexes (2010).
International Agency for Research on Cancer IARC Monographs on the Evaluation of Carcinogenic Risks to Humans vol. 100D: Radiation (2012).
Interactive RadioEpidemiological Program Information Version 5.7 (2020); https://radiationcalculators.cancer.gov/irep/.
National Research Council Health Risks from Exposure to Low Levels of Ionizing Radiation: BEIR VII Phase 2 (National Academies Press 2006).
H. Li Aligning sequence reads clone sequences and assembly contigs with BWA-MEM. arXiv 1303.3997v2 [q-bio.GN] (26 May 2013).
G. A. Van der Auwera et al . From FastQ data to high confidence variant calls: The Genome Analysis Toolkit best practices pipeline. Curr. Protoc. Bioinformatics 43 11 10 11–11 10 33 (2013).
J. Dai NCI-CGR/ChernobylThyroidCancer-RNAseq v1.0.1 (2021); DOI: 10.5281/zenodo.4543812.
J. Dai NCI-CGR/ChernobylThyroidCancer-miRNAseq v1.0.1 (2021); DOI: 10.5281/zenodo.4543818.
C. Birger . FireCloud a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs. bioRxiv [preprint]. 3 November 2017.209494
D. Benjamin . Calling Somatic SNVs and Indels with Mutect2. bioRxiv [preprint]. 2 December 2019.861054
A. Smit R. Hubley P. Green RepeatMasker Open-4.0 (2013–2015); www.repeatmasker.org.
C. Stewart getzlab/REBC_tools: v1.1.0 (2021); DOI: 10.5281/zenodo.4558189.
S. W. Hartley REBC SCNA utils (2021); DOI: 10.5281/zenodo.4535549.
E. T. Dawson edawson/presig: Presig - REBC (2021); DOI: 10.5281/zenodo.4539528.
E. T. Dawson edawson/SigProfilerHelper: SigProfilerHelper - REBC (2021); DOI: 10.5281/zenodo.4539568.
E. T. Dawson edawson/tidysig: tidysig (REBC) (2021); DOI: 10.5281/zenodo.4539636.
B. J. Haas . STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq. bioRxiv [preprint]. 24 March 2017.120295
M. K. Steinberg NCI-CGR/ChernobylThyroidCancer-RNAFusionCalling v1.0.1 (2021); DOI: 10.5281/zenodo.4544030.
M. K. Steinberg NCI-CGR/ChernobylThyroidCancer-RNAVariantCalling v1.0.1 (2021); DOI: 10.5281/zenodo.4544031.
J. Dai NCI-CGR/ChernobylThyroidCancer-Clustering v1.0.1 (2021); DOI: 10.5281/zenodo.4543808.
J. Dai NCI-CGR/ChernobylThyroidCancer-Methylation v1.0.1 (2021); DOI: 10.5281/zenodo.4543824.
J. Dai NCI-CGR/ChernobylThyroidCancer-Scores v1.0.1 (2021); DOI: 10.5281/zenodo.4543809.
UNSCEAR Effects of Ionizing Radiation: United Nations Scientific Committee on the Effects of Atomic Radiation - UNSCEAR 2006 Report Volume 1 - Report to the General Assembly with Scientific Annexes A and B (2008).
D. Preston J. Lubin D. Pierce M. McConney N. Shilnikova Epicure Risk Regression and Person-Year Computation Software: Command Summary and User Guide (Risk Sciences International Ottawa 2015).