RNA fingerprinting analysis of Oenococcus oeni strains under wine conditions

Ahmed, 2000, DDRT-PCR: use of agarose gels for detection of amplified products, Molecular Vision, 6, 144 Akopyanz, 1992, DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting, Nucleic Acids Research, 20, 5137, 10.1093/nar/20.19.5137 Bidle, 2001, RNA arbitrarily primed PCR survey of genes regulated by ToxR in the deep-sea bacterium Photobacterium profundum strain SS9, Journal of Bacteriology, 183, 1688, 10.1128/JB.183.5.1688-1693.2001 Bockelmann, 1999, Optimized visualization and PCR reamplification of differentially displayed cDNA bands detected by silver staining in polyacrylamide gels as established in the model of dithranol-treated keratinocytes, Skin Pharmacology and Applied Skin Physiology, 12, 54, 10.1159/000029846 Bonomo, 2009, Development and optimization of a fluorescent differential display PCR system for analyzing the stress response in Lactobacillus sakei strains, Nutrients, 1, 210, 10.3390/nu1020210 Chakrabortty, 2000, Use of RNA arbitrarily primed-PCR fingerprinting to identify Vibrio cholerae genes differentially expressed in the host following infection, Infection Immunology, 68, 3878, 10.1128/IAI.68.7.3878-3887.2000 Chen, 1996, Non-radioisotopic differential display method to directly visualize and amplify differential bands on nylon membrane, Nucleic Acids Research, 24, 793, 10.1093/nar/24.4.793 Chia, 2001, Identification of stress-responsive genes in Streptococcus mutans by differential display reverse transcription-PCR, Infection and Immunity, 69, 2493, 10.1128/IAI.69.4.2493-2501.2001 Collin, 2001, Identification of conditionally expressed genes in Streptococcus pyogenes using RNA fingerprinting, FEMS Microbiology Letters, 184, 665 Du, 2000, Identification of saliva-regulated genes of Streptococcus gordonii DL1 by differential display using random arbitrarily primed PCR, Infection Immunology, 68, 4834, 10.1128/IAI.68.8.4834-4837.2000 Ferraz, 2010, Gene expression modulation by clacopyrite and bornite in Acidithiobacillus ferooxidans, Archives in Microbiology, 192, 531, 10.1007/s00203-010-0584-6 Frias-Lopez, 2004, Identification of differential gene expression in bacteria associated with coral black band disease by Using RNA-arbitrarily primed PCR, Applied and Environmental Microbiology, 70, 3687, 10.1128/AEM.70.6.3687-3694.2004 Garbeva, 2009, Inter-specific interactions between carbon-limited soil bacteria affect behavior and gene expression, Microbial Ecology, 58, 36, 10.1007/s00248-009-9502-3 Guzzo, 1998, Increase of sulfite tolerance in Oenococcus oeni by means of acidic adaptation, FEMS Microbiology Letters, 160, 43, 10.1111/j.1574-6968.1998.tb12888.x Huey, 1989, Hypervariable DNA Fingerprinting in Escherichia coli: minisatellite probes from bacteriophage M13, Journal of Bacteriology, 53, 2528, 10.1128/jb.171.5.2528-2532.1989 Hunter, 1988, Numerical index of discriminatory ability of typing systems: an application of Simpson's index of diversity, Journal of Clinical Microbiology, 26, 2465, 10.1128/JCM.26.11.2465-2466.1988 Le Jeune, 1995, Development of a detection system for histidine decarboxilating lactic acid bacteria based on DNA probes, PCR and activity test, Journal of Applied Bacteriology, 78, 316, 10.1111/j.1365-2672.1995.tb05032.x Liang, 1992, Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction, Science, 257, 967, 10.1126/science.1354393 Lockyer, 2004, Schistosoma mansoni: resistant specific infection-induced gene expression in Biomphalaria glabrata identified by fluorescent-based differential display, Experimental Parasitology, 107, 97, 10.1016/j.exppara.2004.04.004 Lonvaud-Funel, 1999, Lactic acid bacteria in the quality improvement and depreciation of wine, Antonie van Leeuwenhoek, 76, 317, 10.1023/A:1002088931106 Marques, 2011, Genomic diversity of Oenococcus oeni from different winemaking regions of Portugal, International Microbiology, 14, 155 McClelland, 1995, RNA fingerprinting and differential display using arbitrarily primed PCR, Trends in Genetics, 11, 242, 10.1016/S0168-9525(00)89058-7 Meyer, 1993, Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans, Journal of Clinical Microbiology, 31, 2274, 10.1128/JCM.31.9.2274-2280.1993 Papadimitriou, 2008, RNA arbitrarily primed PCR and fourier transform infrared spectroscopy reveal plasticity in the acid tolerance response of Streptococcus macedonicus, Applied and Environmental Microbiology, 74, 6068, 10.1128/AEM.00315-08 Ripamonte, 2005, Development and optimization of a fluorescent differential display PCR system for studying bovine embryo development in vitro, Genetics and Molecular Research, 4, 726 Rompf, 1997, mRNA differential display in agarose gels, Biotechniques, 23, 10.2144/97231bm04 Shepard, 1999, Identification of aerobically and anaerobically induced genes in Enterococcus faecalis by random arbitrarily primed PCR, Applied and Environmental Microbiology, 65, 1470, 10.1128/AEM.65.4.1470-1476.1999 Sico, 2009, Fingerprinting analysis of Oenococcus oeni strains under stress conditions, FEMS Microbiology Letters, 296, 11, 10.1111/j.1574-6968.2009.01611.x Ulrike, 1989, Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA, Nucleic Acids Research, 17, 7843, 10.1093/nar/17.19.7843 Vauterin, 1992, Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms, European Microbiology, 2, 37 Welsh, 1992, Arbitrarily primed PCR fingerprinting of RNA, Nucleic Acids Research, 20, 4965, 10.1093/nar/20.19.4965 Wong, 1994, Stress-inducible gene of Salmonella typhimurium identified by arbitrarily primed PCR of RNA, Proceedings of the National Academy Sciences of United States of America, 91, 639, 10.1073/pnas.91.2.639 Zar, 1984