Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

Bioinformatics - Tập 21 Số 9 - Trang 1908-1916 - 2005
Alasdair T. R. Laurie1, Robert M. Jackson1
1School of Biochemistry and Microbiology, University of Leeds, Leeds LS2 9JT, UK

Tóm tắt

Từ khóa


Tài liệu tham khảo

Aloy, 2001, Journal of molecular biology, 311, 395, 10.1006/jmbi.2001.4870

Armon, 2001, Journal of molecular biology, 307, 447, 10.1006/jmbi.2000.4474

Artymiuk, 1994, Journal of molecular biology, 243, 327, 10.1006/jmbi.1994.1657

Bate, 2004, Journal of molecular biology, 340, 263, 10.1016/j.jmb.2004.04.070

Berman, 2000, Nucleic Acids Research, 28, 235, 10.1093/nar/28.1.235

Bohacek, 1997, Current opinion in chemical biology, 1, 157, 10.1016/S1367-5931(97)80004-X

Brady, 2000, Journal of computer-aided molecular design, 14, 383, 10.1023/A:1008124202956

Campbell, 2003, Current opinion in structural biology, 13, 389, 10.1016/S0959-440X(03)00075-7

Chen, 1994, Journal of Biological Chemistry, 269, 26344, 10.1016/S0021-9258(18)47199-2

Del Carpio, 1993, Journal of molecular graphics, 11, 23, 10.1016/0263-7855(93)85003-9

Delaney, 1992, Journal of molecular graphics, 10, 174, 10.1016/0263-7855(92)80052-F

Golovin, 2004, Nucleic Acids Research, 32, D211, 10.1093/nar/gkh078

Goodford, 1985, Journal of medicinal chemistry, 28, 849, 10.1021/jm00145a002

Hamilton, 1993, Journal of Biological Chemistry, 268, 2416, 10.1016/S0021-9258(18)53792-3

Hendlich, 1998, Acta Crystallographica, Section D: Biological Crystallography, 54, 1178, 10.1107/S0907444998007124

Hendlich, 1997, Journal of molecular graphics & modelling, 15, 359, 10.1016/S1093-3263(98)00002-3

Henrick, 1998, Trends in biochemical sciences, 23, 358, 10.1016/S0968-0004(98)01253-5

Ho, 1990, Journal of computer-aided molecular design, 4, 337, 10.1007/BF00117400

Honma, 2003, Medicinal research reviews, 23, 606, 10.1002/med.10046

Jackson, 2002, Journal of computer-aided molecular design, 16, 43, 10.1023/A:1016307520660

Jackson, 1998, Journal of molecular biology, 276, 265, 10.1006/jmbi.1997.1519

Jain, 1996, Journal of computer-aided molecular design, 10, 427, 10.1007/BF00124474

Kleywegt, 1994, Acta Crystallographica, Section D: Biological Crystallography, 50, 178, 10.1107/S0907444993011333

Landgraf, 2001, Journal of molecular biology, 307, 1487, 10.1006/jmbi.2001.4540

Laskowski, 1995, Journal of molecular graphics, 13, 323, 10.1016/0263-7855(95)00073-9

LASKOWSKI, 1996, Protein Science, 5, 2438

Levitt, 1992, Journal of molecular graphics, 10, 229, 10.1016/0263-7855(92)80074-N

LIANG, 1998, Protein Science, 7, 1884, 10.1002/pro.5560070905

Lichtarge, 1996, Journal of molecular biology, 257, 342, 10.1006/jmbi.1996.0167

Masuya, 1995, Journal of molecular graphics, 13, 331, 10.1016/0263-7855(95)00071-2

Mikami, 1994, Biochemistry (Easton), 33, 7779, 10.1021/bi00191a005

Miranker, 1991, Proteins, 11, 29, 10.1002/prot.340110104

Murzin, 1995, Journal of molecular biology, 247, 536, 10.1006/jmbi.1995.0159

Nissink, 2002, Proteins, 49, 457, 10.1002/prot.10232

Peters, 1996, Journal of molecular biology, 256, 201, 10.1006/jmbi.1996.0077

Rarey, 1995, Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, 3, 300

RUPPERT, 1997, Protein Science, 6, 524, 10.1002/pro.5560060302

Schmitt, 2002, Journal of molecular biology, 323, 387, 10.1016/S0022-2836(02)00811-2

Silberstein, 2003, Journal of molecular biology, 332, 1095, 10.1016/j.jmb.2003.08.019

Stark, 2003, Nucleic Acids Research, 31, 3341, 10.1093/nar/gkg506

Tong, 1995, Structure (London), 3, 33, 10.1016/S0969-2126(01)00133-2

Uitdehaag, 1999, Journal of Biological Chemistry, 274, 34868, 10.1074/jbc.274.49.34868

Venkatachalam, 2003, Journal of molecular graphics & modelling, 21, 289, 10.1016/S1093-3263(02)00164-X

Verdonk, 2001, Journal of molecular biology, 307, 841, 10.1006/jmbi.2001.4452

Wade, 1989, Progress in clinical and biological research, 289, 433

Wade, 1993, Journal of medicinal chemistry, 36, 140, 10.1021/jm00053a018

WALLACE, 1997, Protein Science, 6, 2308, 10.1002/pro.5560061104