Giao thức: Phương pháp tối ưu hóa cho việc tách nhân tế bào từ lá của các loài trong họ Solanaceae và Rosaceae

Shaw PJ: Nuclear organization in plants. Essays in Biochem. 1996, 31: 77-89. Shaw PJ, Brown JW: Plant nuclear bodies. Curr Opin Plant Biol. 2004, 7 (6): 614-620. 10.1016/j.pbi.2004.09.011. Folta KM, Kaufman LS: Isolation of Arabidopsis nuclei and measurement of gene transcription rates using nuclear run-on assays. Nat Protoc. 2006, 1 (6): 3094-3100. 10.1038/nprot.2006.471. Park MY, Wu G, Gonzalez-Sulser A, Vaucheret H, Poethig RS: Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci U S A. 2005, 102 (10): 3691-3696. 10.1073/pnas.0405570102. Hoffer P, Ivashuta S, Pontes O, Vitins A, Pikaard C, Mroczka A, Wagner N, Voelker T: Posttranscriptional gene silencing in nuclei. Proc Natl Acad Sci. 2011, 108 (1): 409-414. 10.1073/pnas.1009805108. Lutz K, Wang W, Zdepski A, Michael T: Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing. BMC Biotechnology. 2011, 11 (1): 54-10.1186/1472-6750-11-54. Galbraith D, Harkins K, Maddox J, Ayres N, Sharma D, Firoozabady E: Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science. 1983, 220 (4601): 1049-1051. 10.1126/science.220.4601.1049. Arumuganathan K, Earle E: Estimation of nuclear DNA content of plants by flow cytometry. Plant Mol Biol Rep. 1991, 9 (3): 229-241. 10.1007/BF02672073. Doleźel J, Greilhuber J, Suda J: Estimation of nuclear DNA content in plants using flow cytometry. Nat Protoc. 2007, 2: 2233-2244. 10.1038/nprot.2007.310. Cires E, Cuesta C, Fernández Casado MÁ, Nava HS, Vázquez VM, Fernández Prieto JA: solation of plant nuclei suitable for flow cytometry from species with extremely mucilaginous compounds: an example in the genus Viola L. (Violaceae). An Jar Bot Madr. 2011, 68 (2): 139-154. 10.3989/ajbm.2273. Loureiro J, Rodriguez E, Doležel J, Santos C: Comparison of four nuclear isolation buffers for plant DNA flow cytometry. Ann Bot. 2006, 98 (3): 679-689. 10.1093/aob/mcl141. Bae MS, Cho EJ, Choi E, Park OK: Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 2003, 36 (5): 652-663. 10.1046/j.1365-313X.2003.01907.x. Jones AME, MacLean D, Studholme DJ, Serna-Sanz A, Andreasson E, Rathjen JP, Peck SC: Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J Proteomics. 2009, 72 (3): 439-451. 10.1016/j.jprot.2009.02.004. Khan MMK, Komatsu S: Rice proteomics: recent developments and analysis of nuclear proteins. Phytochemistry. 2004, 65 (12): 1671-1681. 10.1016/j.phytochem.2004.04.012. Repetto O, Rogniaux H, Firnhaber C, Zuber H, Küster H, Larré C, Thompson R, Gallardo K: Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling. Plant J. 2008, 56 (3): 398-410. 10.1111/j.1365-313X.2008.03610.x. Pandey A, Choudhary MK, Bhushan D, Chattopadhyay A, Chakraborty S, Datta A, Chakraborty N: The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins. J Proteome Res. 2006, 5 (12): 3301-3311. 10.1021/pr060147a. Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JWS, Shaw PJ: Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell. 2005, 16 (1): 260-269. Calikowski TT, Meulia T, Meier I: A proteomic study of the Arabidopsis nuclear matrix. J Cell Biochem. 2003, 90 (2): 361-378. 10.1002/jcb.10624. Tan F, Li G, Chitteti BR, Peng Z: Proteome and phosphoproteome analysis of chromatin associated proteins in rice (Oryza sativa). Proteomics. 2007, 7 (24): 4511-4527. 10.1002/pmic.200700580. Aki T, Yanagisawa S: Application of rice nuclear proteome analysis to the identification of evolutionarily conserved and glucose-responsive nuclear proteins. J Proteome Res. 2009, 8 (8): 3912-3924. 10.1021/pr900187e. Pandey A, Chakraborty S, Datta A, Chakraborty N: Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.). Mol Cell Proteomics. 2008, 7 (1): 88-107. Choudhary MK, Basu D, Datta A, Chakraborty N, Chakraborty S: Dehydration-responsive nuclear proteome of rice (Oryza sativa L.) illustrates protein network, novel regulators of cellular adaptation, and evolutionary perspective. Mol Cell Proteomics. 2009, 8 (7): 1579-1598. 10.1074/mcp.M800601-MCP200. Ohyama K, Lawrence EP, Horn D: A rapid, simple method for nuclei isolation from plant protoplasts. Plant Physiol. 1977, 60 (2): 179-181. 10.1104/pp.60.2.179. Saxena PK, Fowke LC, King J: An efficient procedure for isolation of nuclei from plant protoplasts. Protoplasma. 1985, 128 (2–3): 184-189. Masuda K, Takahashi S, Nomura K, Inoue M: A simple procedure for the isolation of pure nuclei from carrot embryos in synchronized cultures. Plant Cell Rep. 1991, 10 (6–7): 329-333. Yamaguchi J, Lim P, Akazawa T: Isolation and characterization of nuclei from rice embryo. Cell Struct Funct. 1992, 17: 87-92. 10.1247/csf.17.87. Renouard S, Cyrielle C, Lopez T, Lamblin F, Laine E, Hano C: Isolation of nuclear proteins from flax (Linum usitatissimum L.) seed coats for gene expression regulation studies. BMC Res Notes. 2012, 5 (1): 15-10.1186/1756-0500-5-15. Willmitzer L, Wagner KG: The isolation of nuclei from tissue-cultured plant cells. Exp Cell Res. 1981, 135 (1): 69-77. 10.1016/0014-4827(81)90300-1. Ribeiro Silva TC, Santiago Abreu I, Carvalho CR: Improved and reproducible flow cytometry methodology for nuclei isolation from single root meristem. J Bot. 2010, 2010: 1-7. Zhang H, Zhao X, Ding X, Paterson AH, Wing RA: Preparation of megabase-size DNA from plant nuclei. Plant J. 1995, 7 (1): 175-184. 10.1046/j.1365-313X.1995.07010175.x. Cushman JC: Isolation of nuclei suitable for in vitro transcriptional studies. Methods in Cell Biology. Volume 50. Edited by: Galbraith DW, Bourque DP, Bohnert HJ. 1995, San Diego: Academic Press, 113-128. Loureiro J, Rodriguez E, Doležel J, Santos C: Two new nuclear isolation buffers for plant DNA flow cytometry: a test with 37 species. Ann Bot. 2007, 100 (4): 875-888. 10.1093/aob/mcm152. Guilfoyle TJ:Isolation and characterization of plant nuclei. Methods in Cell Biology. Volume 50. Edited by: Galbraith DW, Bourque DP, Bohnert HJ. 1995, San Diego: Academic Press, 101-112. McKeown P, Pendle AF, Shaw PJ: Preparation of Arabidopsis nuclei and nucleoli. The Nucleus. Volume 1. Edited by: Hancock R. 2008, New York: Humana Press, 67-75. Carrier G, Santoni S, Rodier-Goud M, Canaguier A: Kochko Ad, Dubreuil-Tranchant C, This P, Boursiquot J, Cunff LL: an efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods. Am J Bot. 2011, 98 (1): e13-e15. 10.3732/ajb.1000371. Deal RB, Henikoff S: The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thaliana. Nat Protoc. 2011, 6: 56-68. Abdalla KO, Thomson JA, Rafudeen MS: Protocols for nuclei isolation and nuclear protein extraction from the resurrection plant Xerophyta viscosa for proteomic studies. Anal Biochem. 2009, 384 (2): 365-367. 10.1016/j.ab.2008.09.049. Valkonen J, Slack S, Plaisted R, Watanabe K: Extreme resistance is epistatic to hypersensitive resistance to potato virus Y in a Solanum tuberosum ssp. andigena -derived potato genotype. Plant Dis. 1994, 78 (12): 1177-1180. 10.1094/PD-78-1177. Growth stages of mono- and dicotyledonous plants. BBCH Monograph. 2nd edition. Edited by: Meier U. 2001, : Federal Biological Research Centre for Agriculture and Forestry, Busk PK, Pagés M: Microextraction of nuclear proteins from single maize embryos. Plant Mol Biol Rep. 1997, 15 (4): 371-376.40. 10.1023/A:1007428802474. Vlasák J: Effect of different disintegration techniques and media on yield and appearance of isolated nuclei. Biol Plant. 1981, 23 (6): 406-413. 10.1007/BF02880585. Watson JC, Thompson WF:Purification and restriction endonuclease analysis of plant nuclear DNA. Methods in Enzymology. Volume 118. Edited by: Weissbach A, Weissbach H. 1986, San Diego: Academic Press, 57-75. Graham J, Rickwood D: Subcellular fractionation: a practical approach. 1997, Oxford: IRL Press Harford JB, Bonifacino JS: Subcellular fractionation and isolation of organelles. Curr Protoc Cell Biol. 2010, 48: 3.0.1-3.0.8. Millar AH, Liddell A, Leaver CJ:Isolation and subfractionation of mitochondria from plant. Methods in Cell Biology. Volume 80. Edited by: Pon LA, Schon EA. 2001, San Diego: Academic Press, 65-90.