Protein-protein communication within the transcription apparatus

Journal of Bacteriology - Tập 175 Số 9 - Trang 2483-2489 - 1993
Akira Ishihama1
1Department of Molecular Genetics, National Institute of Genetics, Shizuoka, Japan

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Tài liệu tham khảo

Adhya , S. , and S. Garges . 1990 . Positive control . J. Biol. Chem. 265 : 10797 - 10800 .

la.Ansari A. et al. Unpublished data.

Bell , A. , K. Gaston , R. Williams , K. Chapman , A. Kolb , H. Buc , S. Minchin , J. Williams , and S. Busby . 1990 . Mutations that alter the ability of the Escherichia coli cyclic AMP receptor protein to activate transcription . Nucleic Acids Res. 18 : 7243 - 7250 .

Bracco , L. , D. Kotlarz , A. Kolb , S. Dieckman , and H. Buc . 1989 . Synthetic curved DNA sequences can act as transcriptional activators in Eschenchia coli . EMBO J. 8 : 4289 - 4296 .

Buck , M. , and W. Cannon . 1992 . Specific binding of the transcription factor sigma-54 to promoter DNA . Nature (London) 358 : 422 - 424 .

Collado-Vides , J. , B. Magasanik , and J. D. Gralla . 1991 . Control site location and transcription regulation in Escherichia coli . Microbiol. Rev. 55 : 371 - 394 .

.Ebright R. Personal communication.

Eschenlauer , A. , and W. Reznikoff . 1991 . Escherichia coli catabolite gene activator protein mutants defective in positive control of lac operon transcription . J. Bacteriol. 173 : 5024 - 5029 .

Giladi , H. , K. Igarashi , A. Ishihama , and A. B. Oppenheim . 1992 . Stimulation of the phage X pL promoter by integration host factor requires the carboxy terminus of the a-subunit of RNA polymerase . J. Mol. Biol. 227 : 985 - 990 .

Gross C. M. Lonetto and R. LosickL 1992. Bacterial sigma factors. In S. L. McKnight and K. R. Yamamoto (ed.) Transcription regulation Cold Spring Harbor Laboratory Press Cold Spring Harbor N.Y.

Gussin , G. N. , C. Olson , K. Igarashi , and A. Ishihama . 1992 . Activation defects caused by mutations in Eschenichia coli rpoA are promoter specific . J. Bacteriol. 174 : 5156 - 5160 .

Helmann , J. D. , and M. J. Chamberlin . 1988 . Structure and function of bacterial sigma factors. Annu . Rev. Biochem. 57 : 839 - 872 .

Hochschild , A. , N. Irwin , and M. Ptashne . 1982 . Repressor structure and the mechanism of positive control . Cell 32 : 319 - 325 .

Igarashi , K. , N. Fujita , and A. Ishihama . 1992 . Identification of a subunit assembly domain in the alpha subunit of Escherichia coli RNA polymerase . J. Mol. Biol. 218 : 1 - 6 .

Igarashi , K. , A. Hanamura , K. Makino , A. Aiba , A. Aiba , T. Mizuno , A. Nakata , and A. Ishihama . 1991 . Functional map of the a subunit of Escherichia coli RNA polymerase: two modes of transcription activation by positive factors . Proc. Natl. Acad. Sci. USA 88 : 8958 - 8962 .

Igarashi , K. , and A. Ishihama . 1991 . Bipartite functional map of the E. coli RNA polymerase a subunit: involvement of the C-terminal region in transcription activation by cAMP-CRP . Cell 65 : 1015 - 1022 .

Ishihama , A. 1981 . Subunit assembly of Eschenichia coli RNA polymerase . Adv. Biophys. 14 : 1 - 35 .

Ishihama , A. 1988 . Promoter selectivity of prokaryotic RNA polymerases . Trends Genet. 4 : 282 - 286 .

Ishihama , A. 1990 . Molecular assembly and functional modulation of Escherichia coli RNA polymerase . Adv. Biophys. 26 : 19 - 31 .

Ishihama A. 1991. Global control of gene expression in bacteria p. 121-140. In A. Ishihama and H. Yoshikawa (ed.) Control of cell growth and division. Springer-Verlag Berlin.

Ishihama , A. 1992 . Role of the RNA polymerase a subunit in transcription activation . Mol. Microbiol. 6 : 3283 - 3288 .

Kolb , A. , K. Igarashi , A. Ishihama , M. Lavigne , M. Buckle , and H. Buc . 1993 . E. coli RNA polymerase, deleted in the C-terminal part of its a-subunit, interacts differently with the cAMPCRP complex at the lacP1 and at the galP1 promoter . Nucleic Acids Res. 21 : 319 - 326 .

Kumar A. B. Grimes N. Fujita K. Makino R. A. Malloch R. S. Hayward and A. Ishihama. Role of the sigma 70 subunit of Escherichia coli RNA polymerase in transcription activation. Submitted for publication.

Kumar A. R. A. Malloch N. Fujita D. A. Smillie A. Ishihama and R. S. Hayward. The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription from an "extended minus 10" promoter. Submitted for publication.

Lee , H. - S. , A. Ishihama , and S. Kustu . 1993 . The C terminus of the a subunit of RNA polymerase is not essential for transcription activation of a"4 holoenzyme . J. Bacteriol. 175 : 2479 - 2482 .

Loewen , P. C. , and B. L. Briggs . 1984 . Genetic mapping of katF, a locus that with katE affects the synthesis of a second catalase species in Escherichia coli . J. Bacteriol. 160 : 668 - 675 .

Lombardo , M. S. , D. Bagga , and C. G. Miller . 1991 . Mutations in rpoA affect expression of anaerobically regulated genes in Salmonella typhimurium . J. Bacteriol. 173 : 7511 - 7518 .

Lonetto , M. , M. Bribskov , and C. L. Gross . 1992 . The a70 family: sequence conservation and evolutionary relationships . J. Bacteriol. 174 : 3843 - 3849 .

Makino , K. , M. Amemura , S. -K. Kim , A. Nakata , and H. Shinagawa . 1993 . Role of the d70 subunit of RNA polymerase in transcription activation by activator protein PhoB in Escherichia coli . Genes Dev. 7 : 149 - 160 .

Matthews , K. S. 1992 . DNA looping . Microbiol. Rev. 56 : 123 - 136 .

Mulvey , M. R. , and P. C. Loewen . 1989 . Nucleotide sequence of katF of Eschenchia coli suggests KatF protein is a novel a transcription factor . Nucleic Acids Res. 17 : 9979 - 9991 .

O'Halloran , T. V. , B. Frantz , M. K. Shin , D. M. Ralston , and J. G. Wright . 1989 . The MerR heavy metal receptor mediates positive activation in a topologically novel transcription complex . Cell 56 : 119 - 129 .

Reitzer , L. J. , and B. Magasanik . 1986 . Transcription ofginA in Escherichia coli is stimulated by activator bound to sites far from the promoter . Cell 45 : 785 - 792 .

Reznikoff , W. S. 1992 . Catabolite gene activator protein activation of lac transcription . J. Bacteriol. 174 : 655 - 658 .

Russo , F. D. , and T. J. Silhavy . 1992 . Alpha: the Cinderella subunit of RNA polymerase . J. Biol. Chem. 267 : 14515 - 14518 .

Sakumi , K. , K. Igarashi , M. Sekiguchi , and A. Ishihama . 1993 . The Ada protein is a class I transcription factor of Escherichia coli . J. Bacteriol. 175 : 2455 - 2457 .

Schleif , R. 1988 . DNA looping . Science 240 : 127 - 128 .

Siegele , D. A. , and R. Kolter . 1992 . Life after log . J. Bacteriol. 174 : 345 - 348 .

Slauch , J. M. , F. D. Russo , and T. J. Silhavy . 1991 . Suppressor mutations in rpoA suggest that OmpR controls transcription by direct interaction with the a subunit of RNA polymerase . J. Bacteriol. 173 : 7501 - 7510 .

Storz , G. , L. A. Tartaglia , and B. N. Ames . 1990 . OxyR, a transcriptional regulator of oxidative stress-inducible genes: direct activation by oxidation . Science 248 : 189 - 194 .

Straney , D. C. , S. M. Straney , and D. M. Crothers . 1989 . Synergy between Eschenchia coli CAP protein and RNA polymerase in the lac promoter open complex . J. Mol. Biol. 206 : 41 - 57 .

Tanaka K. Y. Takayanagi N. Fujita A. Ishihama and H. Takahashi. Heterogeneity of the principal sigma factor of RNA polymerase in stationary phase Escherichia coli. Proc. Natl. Acad. Sci. USA in press.

Tao K. N. Fujita and A. Ishihama. Involvement of the RNA polymerase a-subunit C-terminal region in cooperative interaction and transcription activation with OxyR. Mol. Microbiol. in press.

Thomas , M. S. , and R. E. Glass . 1991 . Escherichia coli rpoA mutation which impairs transcription of positively regulated systems . Mol. Microbiol. 5 : 2719 - 2725 .

Yura , T. , and A. Ishihama . 1979 . Genetics of bacterial RNA polymerases. Annu . Rev. Genet. 13 : 59 - 97 .

Zou , C. , N. Fujita , K. Igarashi , and A. Ishihama . 1992 . Mapping of the cAMP receptor protein contact site on the a subunit of Escherichia coli RNA polymerase . Mol. Microbiol. 6 : 2599 - 2605 .