Positive Selection Drives the Evolution of rhino, a Member of the Heterochromatin Protein 1 Family in Drosophila
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2004, Eukaryotic gene regulation by targeted chromatin re-modeling at dispersed, middle-repetitive sequence elements., Curr Opin Genet Dev, 14, 680, 10.1016/j.gde.2004.09.002
2003, Mobile elements and mammalian genome evolution., Curr Opin Genet Dev, 13, 651, 10.1016/j.gde.2003.10.013
2002, Conflict begets complexity: The evolution of centromeres., Curr Opin Genet Dev, 12, 711, 10.1016/S0959-437X(02)00351-9
2001, Domain organization at the centromere and neocentromere., Dev Cell, 1, 165, 10.1016/S1534-5807(01)00028-4
2001, Requirement of heterochromatin for cohesion at centromeres., Science, 294, 2539, 10.1126/science.1064027
1990, The effects of chromosome rearrangements on the expression of heterochromatic genes in chromosome 2L of Drosophila melanogaster., Genetics, 125, 141, 10.1093/genetics/125.1.141
2002, Heterochromatic sequences in a Drosophila whole-genome shotgun assembly., Genome Biol, 3, RESEARCH0085
2002, Epigenetic codes for heterochromatin formation and silencing: Rounding up the usual suspects., Cell, 108, 489, 10.1016/S0092-8674(02)00644-X
2003, Heterochromatin and epigenetic control of gene expression., Science, 301, 798, 10.1126/science.1086887
1995, Heterochromatin and gene expression in Drosophila., Annu Rev Genet, 29, 577, 10.1146/annurev.ge.29.120195.003045
2000, Down-regulation of HP1Hsalpha expression is associated with the metastatic phenotype in breast cancer., Cancer Res, 60, 3359
2004, Subcellular distribution of HP1 proteins is altered in ICF syndrome., Eur J Hum Genet, 13, 41
2003, Effects of tethering HP1 to euchromatic regions of the Drosophila genome., Development, 130, 1817, 10.1242/dev.00405
2002, Does heterochromatin protein 1 always follow code?, Proc Natl Acad Sci U S A, 99, 16462
2004, Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery., Science, 303, 669, 10.1126/science.1092653
1992, The heterochromatin-associated protein HP-1 is an essential protein in Drosophila with dosage-dependent effects on position-effect variegation., Genetics, 131, 345, 10.1093/genetics/131.2.345
2001, Adaptive evolution of Cid, a centromere-specific histone in Drosophila., Genetics, 157, 1293, 10.1093/genetics/157.3.1293
2004, Adaptive evolution of centromere proteins in plants and animals., J Biol, 3, 18, 10.1186/jbiol11
2001, The centromere paradox: Stable inheritance with rapidly evolving DNA., Science, 293, 1098, 10.1126/science.1062939
2000, The HP1 protein family: getting a grip on chromatin., Curr Opin Genet Dev, 10, 204, 10.1016/S0959-437X(00)00058-7
2002, Heterochromatin, HP1 and methylation at lysine 9 of histone H3 in animals., Chromosoma, 111, 22, 10.1007/s00412-002-0182-8
1995, The chromo shadow domain, a second chromo domain in heterochromatin-binding protein 1, HP1., Nucleic Acids Res, 23, 3168, 10.1093/nar/23.16.3168
1991, A sequence motif found in a Drosophila heterochromatin protein is conserved in animals and plants., Nucleic Acids Res, 19, 789, 10.1093/nar/19.4.789
1991, The Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila., Proc Natl Acad Sci U S A, 88, 263, 10.1073/pnas.88.1.263
2001, Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins., Nature, 410, 116, 10.1038/35065132
2001, Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain., Nature, 410, 120, 10.1038/35065138
1995, Functional analysis of the chromo domain of HP1., EMBO J, 14, 3977, 10.1002/j.1460-2075.1995.tb00069.x
2001, Expression and functional analysis of three isoforms of human heterochromatin-associated protein HP1 in Drosophila., Chromosoma, 109, 536, 10.1007/s004120000113
2003, Cell cycle behavior of human HP1 subtypes: Distinct molecular domains of HP1 are required for their centromeric localization during interphase and metaphase., J Cell Sci, 116, 3327, 10.1242/jcs.00635
2001, Immunolocalization of HP1 proteins in metaphasic mammalian chromosomes., Methods Cell Sci, 23, 171
2000, HP1gamma associates with euchromatin and heterochromatin in mammalian nuclei and chromosomes., Cytogenet Cell Genet, 90, 279, 10.1159/000056789
1986, Identification of a nonhistone chromosomal protein associated with heterochromatin in Drosophila melanogaster and its gene., Mol Cell Biol, 6, 3862, 10.1128/MCB.6.11.3862
2001, The hinge and chromo shadow domain impart distinct targeting of HP1-like proteins., Mol Cell Biol, 21, 2555, 10.1128/MCB.21.7.2555-2569.2001
2001, Drosophila rhino encodes a female-specific chromo-domain protein that affects chromosome structure and egg polarity., Genetics, 159, 1117, 10.1093/genetics/159.3.1117
2000, The genome sequence of Drosophila melanogaster., Science, 287, 2185, 10.1126/science.287.5461.2185
1994, A study of the interaction of DAPI with DNA containing AT and non-AT sequences—molecular specificity of minor groove binding drugs., J Biomol Struct Dyn, 11, 849, 10.1080/07391102.1994.10508037
1991, Adaptive protein evolution at the Adh locus in Drosophila., Nature, 351, 652, 10.1038/351652a0
1989, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism., Genetics, 123, 585, 10.1093/genetics/123.3.585
1987, A test of neutral molecular evolution based on nucleotide data., Genetics, 116, 153, 10.1093/genetics/116.1.153
1997, PAML: A program package for phylogenetic analysis by maximum likelihood., Comput Appl Biosci, 13, 555
2002, Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone., Proc Natl Acad Sci U S A, 99, 1449, 10.1073/pnas.032664299
2002, Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail., Science, 295, 2080, 10.1126/science.1069473
2000, The structure of mouse HP1 suggests a unique mode of single peptide recognition by the shadow chromo domain dimer., EMBO J, 19, 1587, 10.1093/emboj/19.7.1587
2000, Dimerisation of a chromo shadow domain and distinctions from the chromodomain as revealed by structural analysis., Curr Biol, 10, 517, 10.1016/S0960-9822(00)00467-X
2004, Structural basis of HP1/PXVXL motif peptide interactions and HP1 localisation to heterochromatin., EMBO J, 23, 489, 10.1038/sj.emboj.7600088
2000, The HP1 chromo shadow domain binds a consensus peptide pentamer., Curr Biol, 10, 27, 10.1016/S0960-9822(99)00260-2
2004, Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites., Genetics, 168, 1041, 10.1534/genetics.104.031153
2002, Accuracy and power of Bayes prediction of amino acid sites under positive selection., Mol Biol Evol, 19, 950, 10.1093/oxfordjournals.molbev.a004152
1973, A new evolutionary law., Evolutionary Theory, 1, 1
2002, Centromere round-up at the heterochromatin corral., Trends Biotechnol, 20, 89, 10.1016/S0167-7799(02)01902-9
1999, Genetic variation in rates of nondisjunction: Association of two naturally occurring polymorphisms in the chromokinesin nod with increased rates of nondisjunction in Drosophila melanogaster., Genetics, 152, 1605, 10.1093/genetics/152.4.1605
1990, Evidence for horizontal transmission of the P transposable element between Drosophila species., Genetics, 124, 339, 10.1093/genetics/124.2.339
2002, The transposable elements of the Drosophila melanogaster euchromatin: A genomics perspective., Genome Biol, 3, RESEARCH0084
2002, Microdissection and sequence analysis of pericentric heterochromatin from the Drosophila melanogaster mutant Suppressor of Underreplication., Chromosoma, 111, 114, 10.1007/s00412-002-0190-8
2003, Distinct HP1 and Su(var)3–9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location., Genes Dev, 17, 2825, 10.1101/gad.281503
2003, Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila., Proc Natl Acad Sci U S A, 100, 9428, 10.1073/pnas.1533393100
2004, cis-Acting determinants of heterochromatin formation on Drosophila melanogaster chromosome four., Mol Cell Biol, 24, 8210, 10.1128/MCB.24.18.8210-8220.2004
2000, Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase., Nat Biotechnol, 18, 424, 10.1038/74487
2001, Molecular biology of the chromo domain: an ancient chromatin module comes of age., Gene, 275, 19, 10.1016/S0378-1119(01)00628-X
2005, Mutations in the heterochromatin protein 1 (HP1) hinge domain affect HP1 protein interactions and chromosomal distribution., Chromosoma, 113, 370, 10.1007/s00412-004-0324-2
2003, HP1 binding to native chromatin in vitro is determined by the hinge region and not by the chromodomain., EMBO J, 22, 3164, 10.1093/emboj/cdg306
1997, A screen for fast evolving genes from Drosophila., Proc Natl Acad Sci U S A, 94, 9746, 10.1073/pnas.94.18.9746
2003, The Drosophila HOAP protein is required for telomere capping., Nat Cell Biol, 5, 82, 10.1038/ncb902
1999, Large number of replacement polymorphisms in rapidly evolving genes of Drosophila. Implications for genome-wide surveys of DNA polymorphism., Genetics, 153, 1717, 10.1093/genetics/153.4.1717
1995, Identification of the chromosome localization domain of the Drosophila nod kinesin-like protein., J Cell Biol, 131, 833, 10.1083/jcb.131.4.833
1990, A kinesin-like protein required for distributive chromosome segregation in Drosophila., Cell, 62, 1053, 10.1016/0092-8674(90)90383-P
1990, Transcripts of individual Drosophila actin genes are differentially distributed during embryogenesis., Dev Genet, 11, 15, 10.1002/dvg.1020110104
1994, DNA Strider. A Macintosh program for handling protein and nucleic acid sequences., Methods Mol Biol, 25, 181
1997, The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools., Nucleic Acids Res, 25, 4876, 10.1093/nar/25.24.4876
1999, K-Estimator: Calculation of the number of nucleotide substitutions per site and the confidence intervals., Bioinformatics, 15, 763, 10.1093/bioinformatics/15.9.763
2004, Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G., PLoS Biol, 2, E275, 10.1371/journal.pbio.0020275
2003, DnaSP, DNA polymorphism analyses by the coalescent and other methods., Bioinformatics, 19, 2496, 10.1093/bioinformatics/btg359
1996, Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans., Mol Biol Evol, 13, 735, 10.1093/oxfordjournals.molbev.a025634
SwoffordDL 2001 PAUP*: Phylogenetic analysis using parsimony (*and other methods) Version 4: Sunderland (Massachusetts) Sinauer Associates
2000, Cn3D: Sequence and structure views for Entrez., Trends Biochem Sci, 25, 300, 10.1016/S0968-0004(00)01561-9
2002, Centromere targeting element within the histone fold domain of Cid., Mol Cell Biol, 22, 7553, 10.1128/MCB.22.21.7553-7561.2002
2003, Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice., Proc Natl Acad Sci U S A, 100, 7480, 10.1073/pnas.1332608100
1999, A minimal peptide substrate in biotin holoenzyme synthetase-catalyzed biotinylation., Protein Sci, 8, 921, 10.1110/ps.8.4.921