Phylogenomic and comparative analyses of <i>Rheum</i> (Polygonaceae, Polygonoideae)

Journal of Systematics and Evolution - Tập 60 Số 6 - Trang 1229-1240 - 2022
Huajie Zhang1,2,3, Xu Zhang1,2,3,4, Jacob B. Landis5,6, Yanxia Sun1,2, Jiao Sun1,2,4, Tianhui Kuang7, Lijuan Li1,2,4, Bashir B. Tiamiyu1,2,4, Tao Deng7, Hang Sun7, Hengchang Wang1,2
1CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
2Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
3These authors contributed equally to this study
4University of Chinese Academy of Sciences, Beijing, 100049, China
5BTI Computational Biology Center, Boyce Thompson Institute, Ithaca, NY, 14853 USA
6School of Integrative Plant Science, Section of Plant Biology and the L.H. Bailey Hortorium, Cornell University, Ithaca, NY, 14850 USA
7Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China

Tóm tắt

AbstractSpecies of Rheum have high medicinal value, with the center of diversity in the Qinghai–Tibet Plateau (QTP) and adjacent regions. However, phylogenetic relationships of Rheum are still unclear due to fragment markers providing insufficient informative loci. Here, we sequenced and annotated plastomes of nine Rheum species, and compared the genome structure among the novel nine species along with three published species. Comparative analyses revealed that plastomes of Rheum share a relatively conserved structure. Five highly divergent regions (accD, ccsA, matK, ndhF, and ndhH) can be used as valuable molecular markers for further species delimitation and population genetic studies. Twenty‐two accessions representing 17 species were used for phylogenetic analysis, which generated a robust phylogenetic tree and revealed two major clades within Rheum. Phylogenetic results showed that glasshouse structures and cushions of Rheum are results of parallel evolution during adaptation to similar environments. Inconsistent tree topology between concatenated and coalescent methods was detected, implying that incomplete lineage sorting and hybridization may have occurred in the evolutionary history of Rheum. Divergence time estimation based on two fossil calibrations and three secondary calibrations revealed a Miocene to middle Oligocene origin of Rheum. Our study provides valuable genomic resources for the medicinally important genus Rheum, while gaining helpful insights into its systematics and evolution.

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Journal of Systematics and Evolution

Tập 60 Số 6

1229-1240

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