Organization of GC/MS and LC/MS metabolomics data into chemical libraries
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Schnackenberg LK, Beger RD: Monitoring the health to disease continuum with global metabolic profiling and systems biology. Pharmacogenomics. 2006, 7: 1077-1086. 10.2217/14622416.7.7.1077.
Nobeli I, Thornton JM: A bioinformatician's view of the metabolome. Bioessays. 2006, 28: 534-545. 10.1002/bies.20414.
Griffin JL: The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?. Philos Trans R Soc Lond B Biol Sci. 2006, 361: 147-161. 10.1098/rstb.2005.1734.
Dunn WB, Bailey NJ, Johnson HE: Measuring the metabolome: current analytical technologies. Analyst. 2005, 130: 606-625. 10.1039/b418288j.
Nordstrom A, O'Maille G, Qin C, Siuzdak G: Nonlinear Data Alignment for UPLC-MS and HPLC-MS Based Metabolomics: Quantitative Analysis of Endogenous and Exogenous Metabolites in Human Serum. Anal Chem. 2006, 78: 3289-3295. 10.1021/ac060245f.
Evans AM, Dehaven CD, Barrett T, Mitchell M, Milgram E: Integrated, Nontargeted Ultrahigh Performance Liquid Chromatography/Electrospray Ionization Tandem Mass Spectrometry Platform for the Identification and Relative Quantification of the Small-Molecule Complement of Biological Systems. Anal Chem. 2009, 81: 6656-6667. 10.1021/ac901536h.
Young SS, Barrett TH, Beecher C: System, Method and Computer Program Product for Analyzing Spectrometry Data to Identify and Quantify Individual Components in a Sample. 2009, US Patent 7,561,975, Issued
Scheltema R, Decuypere S, Dujardin J, Watson D, Jansen R, Breitling R: Simple data-reduction method for high-resolution LC-MS data in metabolomics. Bioanalysis. 2009, 1: 1551-1557. 10.4155/bio.09.146.
Setchell KD, Brown NM, Lydeking-Olsen E: The clinical importance of the metabolite equol-a clue to the effectiveness of soy and its isoflavones. J Nutr. 2002, 132: 3577-3584.
Tolstikov VV, Fiehn O: Analysis of highly polar compounds of plant origin: combination of hydrophilic interaction chromatography and electrospray ion trap mass spectrometry. Anal Biochem. 2002, 301: 298-307. 10.1006/abio.2001.5513.
Werner E, Heilier JF, Ducruix C, Ezan E, Junot C, Tabet JC: Mass spectrometry for the identification of the discriminating signals from metabolomics: current status and future trends. J Chromatogr B Analyt Technol Biomed Life Sci. 2008, 871: 143-163. 10.1016/j.jchromb.2008.07.004.
Katajamaa M, Oresic M: Data processing for mass spectrometry-based metabolomics. J Chromatogr A. 2007, 1158: 318-328. 10.1016/j.chroma.2007.04.021.
Cloarec O, Campbell A, Tseng LH, Braumann U, Spraul M, Scarfe G, Weaver R, Nicholson JK: Virtual chromatographic resolution enhancement in cryoflow LC-NMR experiments via statistical total correlation spectroscopy. Anal Chem. 2007, 79: 3304-3311. 10.1021/ac061928y.
Cloarec O, Dumas ME, Craig A, Barton RH, Trygg J, Hudson J, Blancher C, Gauguier D, Lindon JC, Holmes E, Nicholson J: Statistical total correlation spectroscopy: an exploratory approach for latent biomarker identification from metabolic 1H NMR data sets. Anal Chem. 2005, 77: 1282-1289. 10.1021/ac048630x.
Couto Alves A, Rantalainen M, Holmes E, Nicholson JK, Ebbels TM: Analytic Properties of Statistical Total Correlation Spectroscopy Based Information Recovery in (1)H NMR Metabolic Data Sets. Anal Chem. 2009, 81: 2075-84. 10.1021/ac801982h.
Crockford DJ, Holmes E, Lindon JC, Plumb RS, Zirah S, Bruce SJ, Rainville P, Stumpf CL, Nicholson JK: Statistical heterospectroscopy, an approach to the integrated analysis of NMR and UPLC-MS data sets: application in metabonomic toxicology studies. Anal Chem. 2006, 78: 363-371. 10.1021/ac051444m.
Lawton KA, Berger A, Mitchell M, Milgram KE, Evans AM, Guo L, Hanson RW, Kalhan SC, Ryals JA, Milburn MV: Analysis of the adult human plasma metabolome. Pharmacogenomics. 2008, 9: 383-397. 10.2217/14622416.9.4.383.
Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature. 2009, 457: 910-914. 10.1038/nature07762.
Boudonck KJ, Mitchell MW, Nemet L, Keresztes L, Nyska A, Shinar D, Rosenstock M: Discovery of metabolomics biomarkers for early detection of nephrotoxicity. Toxicol Pathol. 2009, 37: 280-292. 10.1177/0192623309332992.
Watson M, Roulston A, Bélec L, Billot X, Marcellus R, Bédard D, Bernier C, Branchaud S, Chan H, Dairi K, Gilbert K, Goulet D, Gratton MO, Isakau H, Jang A, Khadir A, Koch E, Lavoie M, Lawless M, Nguyen M, Paquette D, Turcotte E, Berger A, Mitchell M, Shore GC, Beauparlant P: The small molecule GMX1778 is a potent inhibitor of NAD+ biosynthesis: strategy for enhanced therapy in nicotinic acid phosphoribosyltransferase 1-deficient tumors. Mol Cell Biol. 2009, 29: 5872-5888. 10.1128/MCB.00112-09.
Ohta T, Masutomi N, Tsutsui N, Sakairi T, Mitchell M, Milburn MV, Ryals JA, Beebe KD, Guo L: Untargeted metabolomic profiling as an evaluative tool of fenofibrate-induced toxicology in Fischer 344 male rats. Toxicol Pathol. 2009, 37: 521-535. 10.1177/0192623309336152.
Boudonck KJ, Mitchell M, Wulff J, Ryals JA: Characterization of the biochemical variability of bovine milk using metabolomics. Metabolomics. 2009, 5: 375-386. 10.1007/s11306-009-0160-8.