NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins

Springer Science and Business Media LLC - Tập 10 - Trang 1-10 - 2017
Hironao Wakabayashi1, Christopher Tucker1, Gabor Bethlendy2,3, Anatoliy Kravets1, Stephen L. Welle4,5, Michael Bulger5, Jeffrey J. Hayes1, Elena Rustchenko1
1Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, USA
2Roche Diagnostics Corporation, Indianapolis, USA
3Parabase Genomics, Dorchester, USA
4Department of Medicine, University of Rochester, Medical Center, Rochester, USA
5Department of Pediatrics, Center for Pediatric Biochemical Research, University of Rochester Medical Center, Rochester, USA

Tóm tắt

The major human fungal pathogen Candida albicans possesses a diploid genome, but responds to growth in challenging environments by employing chromosome aneuploidy as an adaptation mechanism. For example, we have shown that C. albicans adapts to growth on the toxic sugar l-sorbose by transitioning to a state in which one chromosome (chromosome 5, Ch5) becomes monosomic. Moreover, analysis showed that while expression of many genes on the monosomic Ch5 is altered in accordance with the chromosome ploidy, expression of a large fraction of genes is increased to the normal diploid level, presumably compensating for gene dose. In order to understand the mechanism of the apparent dosage compensation, we now report genome-wide ChIP-microarray assays for a sorbose-resistant strain harboring a monosomic Ch5. These data show a significant chromosome-wide elevation in histone H4 acetylation on the mCh5, but not on any other chromosome. Importantly, strains lacking subunits of the NuA4 H4 histone acetyltransferase complex, orthologous to a complex previously shown in Drosophila to be associated with a similar gene dosage compensation mechanism, did not show an increase in H4 acetylation. Moreover, loss of NuA4 subunits severely compromised the adaptation to growth on sorbose. Our results are consistent with a model wherein chromosome-wide elevation of H4 acetylation mediated by the NuA4 complex plays a role in increasing gene expression in compensation for gene dose and adaption to growth in a toxic environment.

Tài liệu tham khảo

Rustchenko E. Chromosome instability in Candida albicans. FEMS Yeast Res. 2007;7:1–11. Rustchenko E. Specific chromosome alterations of Candida albicans: mechanisms for adaptation to pathogenicity. In: Nombela C, Cassel GH, Baquero F, Gutierrez-Fuentes JA, editors. Evolutionary biology of bacterial and fungal pathogens. Washington: ASM Press; 2008. p. 197–212. Yang F, Kravets A, Bethlendy G, Welle S, Rustchenko E. Chromosome 5 monosomy of Candida albicans controls susceptibility to various toxic agents, including major antifungals. Antimicrob Agents Chemother. 2013;57:5026–36. Yang F, Zhang L, Wakabayashi H, Myers J, Jiang Y, Cao Y, Jimenez-Ortigosa C, Perlin DS, Rustchenko E. Tolerance to caspofungin in Candida albicans is associated with at least three distinctive mechanisms that govern expression of FKS Genes and cell wall remodeling. Antimicrob Agents Chemother. 2017;61:e00071-17. doi:10.1128/AAC.00071-17. Kwon-Chung KJ, Chang YC. Aneuploidy and drug resistance in pathogenic fungi. PLoS Pathog. 2012;8:e1003022. Ford ChB, Funt JM, Abbey D, Issi L, Guiducci C, Martinez DA, Delorey T, Li BY, White ThC, Cuomo Ch, Rao RP, Berman J, Thompson DA, Regev A. The evolution of drug resistance in clinical isolates of Candida albicans. eLIFE. 2014. doi:10.7554/eLife.00662. Kravets A, Qin H, Ahmad A, Bethlendy G, Gao Q, Rustchenko E. Widespread occurrence of dosage compensation in Candida albicans. PLoS ONE. 2010;5:e10856. Kravets A, Yang F, Bethlendy G, Sherman F, Rustchenko E. Adaptation of Candida albicans to growth on sorbose via monosomy of chromosome 5 accompanied by duplication of another chromosome carrying a gene responsible for sorbose utilization. FEMS Yeast Res. 2014;14:708–13. Suwunnakorn S, Wakabayashi H, Rustchenko E. Chromosome 5 of human pathogen Candida albicans carries multiple genes for negative control of caspofungin and anidulafungin susceptibility. Antimicrob Agents Chemother. 2016;60:7457–67. Kabir M, Ahmad A, Greenberg J, Wang Y-K, Rustchenko E. Loss and gain of chromosome 5 controls growth of Candida albicans on sorbose due to dispersed redundant negative regulators. Proc Natl Acad Sci USA. 2005;102:12147–52. Ahmad A, Kravets A, Rustchenko E. Transcriptional regulatory circuitries in the human pathogen Candida albicans involving sense-antisense interactions. Genetics. 2012;190:537–47. Hallacli E, Akhtar A. X chromosomal regulation in flies: when less is more. Chromosome Res. 2009;17:603–19. Eisen A, Utley RT, Nourani A, Allard S, Schmidt P, Lane WS, Lucchesi JC, Côté J. The yeast NuA4 and Drosophila MSL complexes contain homologous subunits important for transcription regulation. J Biol Chem. 2001;276:3484–91. Doyon Y, Côté J. The highly conserved and multifunctional NuA4 HAT complex. Curr Opin Genet Dev. 2004;14:147–54. Doyon Y, Selleck W, Lane WS, Tan S, Côté J. Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans. MCB. 2004;24:1884–96. Wang X, Chang P, Ding J, Chen J. Distinct and redundant roles of the two MYST histone acetyltransferases Esa1 and Sas2 in cell growth and morphogenesis of Candida albicans. Eucaryot Cell. 2013;12:438–49. Lu Y, Su Ch, Mao X, PalaRaniga P, Liu H, Chen J. Efg1-mediated recruitment of NuA4 to promoters is required for hypha-specific Swi/Snf binding and activation in Candida albicans. Mol Biol Cell. 2008;19:4260–72. Janbon G, Sherman F, Rustchenko E. Appearance and properties of l-sorbose-utilizing mutants of Candida albicans obtained on a selective plate. Genetics. 1999;153:653–64. Rustchenko EP, Curran TM, Sherman F. Variations in the number of ribosomal DNA units in morphological mutants and normal strains of Candida albicans and in normal strains of Saccharomyces cerevisiae. J Bacteriol. 1993;175:7189–99. Rustchenko E. Candida albicans adaptability to environmental challenges by means of specific chromosomal alterations. In: Pandalai SG, editor. Recent research developments in bacteriology, vol. 1. Trivandrum: Transworld Research Network; 2003. p. 91–102. Lopez da Rosa J, Kaufman PD. Chromatin-mediated Candida albicans virulence. Biochim Biophys Acta. 2012;1819:349–55. Sellam A, Askew C, Epp E, Lavoi H, Whiteway M, Nantel A. Genome-wide mapping of the coactivator Ada2p yields insight into the functional roles of SAGA/ADA complex in Candida albicans. Mol Biol Cell. 2009;20:2389–400. Mitchell L, Lambert JP, Gerdes M, Al-Madhoun AS, Skerjanc IS, Figeys D, Baetz K. Functional dissection of the NuA4 histone acetyltransferase reveals its role as a genetic hub and that Esf1 is essential for complex integrity. Mol Cell Biol. 2008;28:2244–56. Chittuluru JR, Chaban Y, Monnet-Saksouk J, Carrozza M, Sapountzi V, Selleck W, Huang J, Utley RT, Cramet M, Allard S, Cai G, Workman JL, Fried MG, Tan S, Côté J, Asturias FJ. Structure and nucleosome interaction of the yeast NuA4 and piccolo-NuA4 histone acetyltransferase complexes. Nat Struct Mol Biol. 2011;18:1196–203. Hose J, Mun Yong C, Sardi M, Wang Z, Newton MA, Gasch AP. Dosage compensation can buffer copy-number variation in wild yeasts. eLIFE. 2015. doi:10.7554/eLife.05462.001. Davis DA, Bruno VM, Loza L, Filler SG, Mitchell AP. Candida albicans Mds3p, is a conserved regulator of pH responses and virulence identified through insertional mutagenesis. Genetics. 2002;162:1573–81. Janbon G, Sherman F, Rustchenko E. Monosomy of a specific chromosome determines l-sorbose utilization: a novel regulatory mechanism in Candida albicans. Proc Natl Acad Sci USA. 1998;95:5150–5. Sherman F. Getting started with yeast. Methods Enzymol. 2003;350:3–41. Rustchenko-Bulgac E. Variations of Candida albicans electrophoretic karyotypes. J Bacteriol. 1991;173:6586–96. Ahmad A, Kabir MA, Kravets A, Andaluz E, Larriba G, Rustchenko E. Chromosome instability and unusual features of some widely used strains of Candida albicans. Yeast. 2008;25:433–48. Drouin S, Robert F. Genome-wide location analysis of chromatin-associated proteins by ChIP on CHIP: controls matter. 2015; in press. https://www.researchgate.net/publication/268401136_Genome-wide_Location_Analysis_of_Chromatin-associated_Proteins_by_ChIP_on_CHIP_Controls_Matter