Mechanisms and enzymes involved in SARS coronavirus genome expression

Journal of General Virology - Tập 84 Số 9 - Trang 2305-2315 - 2003
Volker Thiel1, Konstantin A. Ivanov1, Ákos Putics1, Tobias Hertzig1, Barbara Schelle1, Sonja Bayer1, Benedikt Weißbrich1, Eric J. Snijder2, Holger F. Rabenau3, Hans Wilhelm Doerr3, Alexander E. Gorbalenya2, John Ziebuhr1
1Institute of Virology and Immunology, University of Würzburg, Versbacher Str. 7, 97078 Würzburg, Germany
2Molecular Virology Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands
3Institute for Medical Virology, Johann Wolfgang Goethe University, Frankfurt (Main), Germany

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Anand, 2002, Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain, EMBO J, 21, 3213, 10.1093/emboj/cdf327

Anand, 2003, Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs, Science, 300, 1763, 10.1126/science.1085658

Baker, 1989, Identification of a domain required for autoproteolytic cleavage of murine coronavirus gene A polyprotein, J Virol, 63, 3693, 10.1128/JVI.63.9.3693-3699.1989

Bonilla, 1997, Characterization of a second cleavage site and demonstration of activity in trans by the papain-like proteinase of the murine coronavirus mouse hepatitis virus strain A59, J Virol, 71, 900, 10.1128/JVI.71.2.900-909.1997

Bost, 2000, Four proteins processed from the replicase gene polyprotein of mouse hepatitis virus colocalize in the cell periphery and adjacent to sites of virion assembly, J Virol, 74, 3379, 10.1128/JVI.74.7.3379-3387.2000

Brierley, 1995, Ribosomal frameshifting viral RNAs, J Gen Virol, 76, 1885, 10.1099/0022-1317-76-8-1885

Brierley, 1989, Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot, Cell, 57, 537, 10.1016/0092-8674(89)90124-4

de Haan, 2002, The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host, Virology, 296, 177, 10.1006/viro.2002.1412

Drosten, 2003, Identification of a novel coronavirus in patients with severe acute respiratory syndrome, N Engl J Med, 348, 1967, 10.1056/NEJMoa030747

Eleouet, 1995, Complete sequence (20 kilobases) of the polyprotein-encoding gene 1 of transmissible gastroenteritis virus, Virology, 206, 817, 10.1006/viro.1995.1004

Fouchier, 2003, Aetiology: Koch's postulates fulfilled for SARS virus, Nature, 423, 240, 10.1038/423240a

Gorbalenya, 2001, Big nidovirus genome. When count and order of domains matter, Adv Exp Med Biol, 494, 1, 10.1007/978-1-4615-1325-4_1

Gorbalenya, 1989a, Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis, Nucleic Acids Res, 17, 4847, 10.1093/nar/17.12.4847

Gorbalenya, 1989b, Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes, Nucleic Acids Res, 17, 4713, 10.1093/nar/17.12.4713

Gorbalenya, 1991, Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses, FEBS Lett, 288, 201, 10.1016/0014-5793(91)81034-6

Hegyi, 2002, Conservation of substrate specificities among coronavirus main proteases, J Gen Virol, 83, 595, 10.1099/0022-1317-83-3-595

Hegyi, 2002, Mutational analysis of the active centre of coronavirus 3C-like proteases, J Gen Virol, 83, 581, 10.1099/0022-1317-83-3-581

Herold, 1993, Nucleotide sequence of the human coronavirus 229E RNA polymerase locus, Virology, 195, 680, 10.1006/viro.1993.1419

Herold, 1998, Proteolytic processing at the amino terminus of human coronavirus 229E gene 1-encoded polyproteins: identification of a papain-like proteinase and its substrate, J Virol, 72, 910, 10.1128/JVI.72.2.910-918.1998

Heusipp, 1997, Identification of an ATPase activity associated with a 71-kilodalton polypeptide encoded in gene 1 of the human coronavirus 229E, J Virol, 71, 5631, 10.1128/JVI.71.7.5631-5634.1997

Kanjanahaluethai, 2000, Identification of mouse hepatitis virus papain-like proteinase 2 activity, J Virol, 74, 7911, 10.1128/JVI.74.17.7911-7921.2000

Kocherhans, 2001, Completion of the porcine epidemic diarrhoea coronavirus (PEDV) genome sequence, Virus Genes, 23, 137, 10.1023/A:1011831902219

Ksiazek, 2003, A novel coronavirus associated with severe acute respiratory syndrome, N Engl J Med, 348, 1953, 10.1056/NEJMoa030781

Lai, 2001, Coronaviridae : the viruses and their replication, In, 1163

Lim, 2000, Identification of a novel cleavage activity of the first papain-like proteinase domain encoded by open reading frame 1a of the coronavirus avian infectious bronchitis virus and characterization of the cleavage products, J Virol, 74, 1674, 10.1128/JVI.74.4.1674-1685.2000

Liu, 1995, Involvement of viral and cellular factors in processing of polyprotein encoded by ORF1a of the coronavirus IBV, Adv Exp Med Biol, 380, 413, 10.1007/978-1-4615-1899-0_67

Marra, 2003, The genome sequence of the SARS-associated coronavirus, Science, 300, 1399, 10.1126/science.1085953

Pasternak, 2001, Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis, EMBO J, 20, 7220, 10.1093/emboj/20.24.7220

Peiris, 2003a, Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study, Lancet, 361, 1767, 10.1016/S0140-6736(03)13412-5

Peiris, 2003b, Coronavirus as a possible cause of severe acute respiratory syndrome, Lancet, 361, 1319, 10.1016/S0140-6736(03)13077-2

Rota, 2003, Characterization of a novel coronavirus associated with severe acute respiratory syndrome, Science, 300, 1394, 10.1126/science.1085952

Ruan, 2003, Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection, Lancet, 361, 1779, 10.1016/S0140-6736(03)13414-9

Sawicki, 1998, A new model for coronavirus transcription, Adv Exp Med Biol, 440, 215, 10.1007/978-1-4615-5331-1_26

Schneider, 1990, Sequence logos: a new way to display consensus sequences, Nucleic Acids Res, 18, 6097, 10.1093/nar/18.20.6097

Seybert, 1997, Expression and characterization of a recombinant murine coronavirus 3C-like proteinase, J Gen Virol, 78, 71, 10.1099/0022-1317-78-1-71

Seybert, 2000a, The human coronavirus 229E superfamily 1 helicase has RNA and DNA duplex-unwinding activities with 5′-to-3′ polarity, RNA, 6, 1056, 10.1017/S1355838200000728

Seybert, 2000b, Biochemical characterization of the equine arteritis virus helicase suggests a close functional relationship between arterivirus and coronavirus helicases, J Virol, 74, 9586, 10.1128/JVI.74.20.9586-9593.2000

Siddell, 1995, The Coronaviridae, 10.1007/978-1-4899-1531-3

Snijder, 2003, Unique and conserved features of genome and proteome of SARS coronavirus, an early split-off from the coronavirus group 2 lineage, 10.1016/S0022-2836(03)00865-9

Thiel, 1994, Internal ribosome entry in the coding region of murine hepatitis virus mRNA 5, J Gen Virol, 75, 3041, 10.1099/0022-1317-75-11-3041

Thiel, 1997, Effective amplification of 20-kb DNA by reverse transcription PCR, Anal Biochem, 252, 62, 10.1006/abio.1997.2307

Thiel, 2001, Infectious RNA transcribed in vitro from a cDNA copy of the human coronavirus genome cloned in vaccinia virus, J Gen Virol, 82, 1273, 10.1099/0022-1317-82-6-1273

van Dinten, 2000, The predicted metal-binding region of the arterivirus helicase protein is involved in subgenomic mRNA synthesis, genome replication, and virion biogenesis, J Virol, 74, 5213, 10.1128/JVI.74.11.5213-5223.2000

van Vliet, 2002, Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus, EMBO J, 21, 6571, 10.1093/emboj/cdf635

Walker, 1982, Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold, EMBO J, 1, 945, 10.1002/j.1460-2075.1982.tb01276.x

Yao, 1992, Site-directed mutagenesis of herpesvirus glycoprotein phosphorylation sites by recombination polymerase chain reaction, PCR Methods Appl, 1, 205, 10.1101/gr.1.3.205

Ziebuhr, 1999, Processing of the human coronavirus 229E replicase polyproteins by the virus-encoded 3C-like proteinase: identification of proteolytic products and cleavage sites common to pp1a and pp1ab, J Virol, 73, 177, 10.1128/JVI.73.1.177-185.1999

Ziebuhr, 1995, Characterization of a human coronavirus (strain 229E) 3C-like proteinase activity, J Virol, 69, 4331, 10.1128/JVI.69.7.4331-4338.1995

Ziebuhr, 1997, Biosynthesis, purification, and characterization of the human coronavirus 229E 3C-like proteinase, J Virol, 71, 3992, 10.1128/JVI.71.5.3992-3997.1997

Ziebuhr, 2000, Virus-encoded proteinases and proteolytic processing in the Nidovirales, J Gen Virol, 81, 853, 10.1099/0022-1317-81-4-853

Ziebuhr, 2001, The autocatalytic release of a putative RNA virus transcription factor from its polyprotein precursor involves two paralogous papain-like proteases that cleave the same peptide bond, J Biol Chem, 276, 33220, 10.1074/jbc.M104097200