Mechanisms and enzymes involved in SARS coronavirus genome expression
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Anand, 2002, Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain, EMBO J, 21, 3213, 10.1093/emboj/cdf327
Anand, 2003, Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs, Science, 300, 1763, 10.1126/science.1085658
Baker, 1989, Identification of a domain required for autoproteolytic cleavage of murine coronavirus gene A polyprotein, J Virol, 63, 3693, 10.1128/JVI.63.9.3693-3699.1989
Bonilla, 1997, Characterization of a second cleavage site and demonstration of activity in trans by the papain-like proteinase of the murine coronavirus mouse hepatitis virus strain A59, J Virol, 71, 900, 10.1128/JVI.71.2.900-909.1997
Bost, 2000, Four proteins processed from the replicase gene polyprotein of mouse hepatitis virus colocalize in the cell periphery and adjacent to sites of virion assembly, J Virol, 74, 3379, 10.1128/JVI.74.7.3379-3387.2000
Brierley, 1995, Ribosomal frameshifting viral RNAs, J Gen Virol, 76, 1885, 10.1099/0022-1317-76-8-1885
Brierley, 1989, Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot, Cell, 57, 537, 10.1016/0092-8674(89)90124-4
de Haan, 2002, The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host, Virology, 296, 177, 10.1006/viro.2002.1412
Drosten, 2003, Identification of a novel coronavirus in patients with severe acute respiratory syndrome, N Engl J Med, 348, 1967, 10.1056/NEJMoa030747
Eleouet, 1995, Complete sequence (20 kilobases) of the polyprotein-encoding gene 1 of transmissible gastroenteritis virus, Virology, 206, 817, 10.1006/viro.1995.1004
Fouchier, 2003, Aetiology: Koch's postulates fulfilled for SARS virus, Nature, 423, 240, 10.1038/423240a
Gorbalenya, 2001, Big nidovirus genome. When count and order of domains matter, Adv Exp Med Biol, 494, 1, 10.1007/978-1-4615-1325-4_1
Gorbalenya, 1989a, Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis, Nucleic Acids Res, 17, 4847, 10.1093/nar/17.12.4847
Gorbalenya, 1989b, Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes, Nucleic Acids Res, 17, 4713, 10.1093/nar/17.12.4713
Gorbalenya, 1991, Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses, FEBS Lett, 288, 201, 10.1016/0014-5793(91)81034-6
Hegyi, 2002, Conservation of substrate specificities among coronavirus main proteases, J Gen Virol, 83, 595, 10.1099/0022-1317-83-3-595
Hegyi, 2002, Mutational analysis of the active centre of coronavirus 3C-like proteases, J Gen Virol, 83, 581, 10.1099/0022-1317-83-3-581
Herold, 1993, Nucleotide sequence of the human coronavirus 229E RNA polymerase locus, Virology, 195, 680, 10.1006/viro.1993.1419
Herold, 1998, Proteolytic processing at the amino terminus of human coronavirus 229E gene 1-encoded polyproteins: identification of a papain-like proteinase and its substrate, J Virol, 72, 910, 10.1128/JVI.72.2.910-918.1998
Heusipp, 1997, Identification of an ATPase activity associated with a 71-kilodalton polypeptide encoded in gene 1 of the human coronavirus 229E, J Virol, 71, 5631, 10.1128/JVI.71.7.5631-5634.1997
Kanjanahaluethai, 2000, Identification of mouse hepatitis virus papain-like proteinase 2 activity, J Virol, 74, 7911, 10.1128/JVI.74.17.7911-7921.2000
Kocherhans, 2001, Completion of the porcine epidemic diarrhoea coronavirus (PEDV) genome sequence, Virus Genes, 23, 137, 10.1023/A:1011831902219
Ksiazek, 2003, A novel coronavirus associated with severe acute respiratory syndrome, N Engl J Med, 348, 1953, 10.1056/NEJMoa030781
Lai, 2001, Coronaviridae : the viruses and their replication, In, 1163
Lim, 2000, Identification of a novel cleavage activity of the first papain-like proteinase domain encoded by open reading frame 1a of the coronavirus avian infectious bronchitis virus and characterization of the cleavage products, J Virol, 74, 1674, 10.1128/JVI.74.4.1674-1685.2000
Liu, 1995, Involvement of viral and cellular factors in processing of polyprotein encoded by ORF1a of the coronavirus IBV, Adv Exp Med Biol, 380, 413, 10.1007/978-1-4615-1899-0_67
Marra, 2003, The genome sequence of the SARS-associated coronavirus, Science, 300, 1399, 10.1126/science.1085953
Pasternak, 2001, Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis, EMBO J, 20, 7220, 10.1093/emboj/20.24.7220
Peiris, 2003a, Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study, Lancet, 361, 1767, 10.1016/S0140-6736(03)13412-5
Peiris, 2003b, Coronavirus as a possible cause of severe acute respiratory syndrome, Lancet, 361, 1319, 10.1016/S0140-6736(03)13077-2
Rota, 2003, Characterization of a novel coronavirus associated with severe acute respiratory syndrome, Science, 300, 1394, 10.1126/science.1085952
Ruan, 2003, Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection, Lancet, 361, 1779, 10.1016/S0140-6736(03)13414-9
Sawicki, 1998, A new model for coronavirus transcription, Adv Exp Med Biol, 440, 215, 10.1007/978-1-4615-5331-1_26
Schneider, 1990, Sequence logos: a new way to display consensus sequences, Nucleic Acids Res, 18, 6097, 10.1093/nar/18.20.6097
Seybert, 1997, Expression and characterization of a recombinant murine coronavirus 3C-like proteinase, J Gen Virol, 78, 71, 10.1099/0022-1317-78-1-71
Seybert, 2000a, The human coronavirus 229E superfamily 1 helicase has RNA and DNA duplex-unwinding activities with 5′-to-3′ polarity, RNA, 6, 1056, 10.1017/S1355838200000728
Seybert, 2000b, Biochemical characterization of the equine arteritis virus helicase suggests a close functional relationship between arterivirus and coronavirus helicases, J Virol, 74, 9586, 10.1128/JVI.74.20.9586-9593.2000
Snijder, 2003, Unique and conserved features of genome and proteome of SARS coronavirus, an early split-off from the coronavirus group 2 lineage, 10.1016/S0022-2836(03)00865-9
Thiel, 1994, Internal ribosome entry in the coding region of murine hepatitis virus mRNA 5, J Gen Virol, 75, 3041, 10.1099/0022-1317-75-11-3041
Thiel, 1997, Effective amplification of 20-kb DNA by reverse transcription PCR, Anal Biochem, 252, 62, 10.1006/abio.1997.2307
Thiel, 2001, Infectious RNA transcribed in vitro from a cDNA copy of the human coronavirus genome cloned in vaccinia virus, J Gen Virol, 82, 1273, 10.1099/0022-1317-82-6-1273
van Dinten, 2000, The predicted metal-binding region of the arterivirus helicase protein is involved in subgenomic mRNA synthesis, genome replication, and virion biogenesis, J Virol, 74, 5213, 10.1128/JVI.74.11.5213-5223.2000
van Vliet, 2002, Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus, EMBO J, 21, 6571, 10.1093/emboj/cdf635
Walker, 1982, Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold, EMBO J, 1, 945, 10.1002/j.1460-2075.1982.tb01276.x
Yao, 1992, Site-directed mutagenesis of herpesvirus glycoprotein phosphorylation sites by recombination polymerase chain reaction, PCR Methods Appl, 1, 205, 10.1101/gr.1.3.205
Ziebuhr, 1999, Processing of the human coronavirus 229E replicase polyproteins by the virus-encoded 3C-like proteinase: identification of proteolytic products and cleavage sites common to pp1a and pp1ab, J Virol, 73, 177, 10.1128/JVI.73.1.177-185.1999
Ziebuhr, 1995, Characterization of a human coronavirus (strain 229E) 3C-like proteinase activity, J Virol, 69, 4331, 10.1128/JVI.69.7.4331-4338.1995
Ziebuhr, 1997, Biosynthesis, purification, and characterization of the human coronavirus 229E 3C-like proteinase, J Virol, 71, 3992, 10.1128/JVI.71.5.3992-3997.1997
Ziebuhr, 2000, Virus-encoded proteinases and proteolytic processing in the Nidovirales, J Gen Virol, 81, 853, 10.1099/0022-1317-81-4-853