Logical basis for morphological characters in phylogenetics

Cladistics - Tập 23 Số 6 - Trang 565-587 - 2007
Paul C. Sereno1
1University-of Chicago

Tóm tắt

Abstract

Systematists have questioned the distinction between characters and character states and their alignment with the traditional concept of homology. Previous definitions for character and character state show surprising variation. Here it is concluded that characters are simply features expressed as independent variables and character states the mutually exclusive conditions of a character. Together, characters and character states compose what are here termed character statements. Character statements are composed of only four fundamental functional components here identified as locator, variable, variable qualifier, and character state, and these components exist in only two patterns, neomorphic and transformational. Several controversies in character coding and the use of “absent” as a character state are understood here as a consequence of incomplete character statements and the inappropriate mixing of neomorphic and transformational character statements. Only a few logically complete patterns for morphological character data exist; their adoption promises to greatly reduce current variability in character data between analyses.

© The Willi Hennig Society 2007.

Từ khóa


Tài liệu tham khảo

10.2307/2412740

10.2307/1220934

De Beer G.R., 1971, Homology, an unsolved problem, Oxford Biol. Readers, 11, 1

10.2307/2412945

10.1002/bies.950180611

10.1007/978-1-4684-8851-7_26

Brower A.V.Z., 2000, Homology and Systematics., 10

10.1111/j.1096-0031.1996.tb00014.x

10.1111/j.1096-3642.1958.tb00634.x

Chomsky N., 1965, Aspects of the Theory of Syntax

10.2307/2411512

10.2307/2413331

10.2307/2412975

10.1146/annurev.es.01.110170.000415

10.1016/S0895-7177(97)00078-2

10.2307/2412814

10.1666/0094-8373(2000)026<0520:TMSOTA>2.0.CO;2

10.2307/2412028

10.2307/2412452

Farris J.S., 1983, Advances in Cladistics, 7

10.1111/j.1096-0031.1995.tb00086.x

10.1146/annurev.es.14.110183.001525

Fistrup K., 1992, Keywords in Evolutionary Biology, 45

10.1016/B978-012730055-9/50010-0

Forey P.L., 2000, Homology and Systematics., 54

10.1080/10635150500354654

10.2307/2413135

Grande L., 1994, Interpreting the Hierarchy of Nature: From Systematic Patterns to Process Theories

10.1111/j.1096-0031.2003.tb00311.x

10.1111/j.1096-0031.2004.00003.x

Hall B.K., 1994, Introduction, 1

Hall B.K., 1994, Homology: The Hierarchical Basis of Comparative Biology

Harvey P.H., 1991, The Comparative Method in Evolutionary Biology

Hawkins J.A., 2000, Homology and Systematics., 22

10.1111/j.1096-0031.1997.tb00320.x

10.1086/283096

10.1007/978-1-4684-8851-7_1

Hennig W., 1966, Phylogenetic Systematics

Kitching I., 1998, Cladistics: the Theory and Practice of Parsimony Analysis

10.1111/j.1096-0031.2003.tb00379.x

10.2307/2412407

Lauder G.V., 1994, Homology: The Hierarchical Basis of Comparative Biology, 152

10.1111/j.1095-8312.1998.tb01148.x

10.1017/S0022336000033102

10.1093/bioinformatics/bti557

Liem K.F., 2001, Functional Anatomy of the Vertebrates.

Little W., 1955, The Oxford Universal Dictionary: On Historical Principles

10.1577/1548-8659(1989)118<0151:AUTUOO>2.3.CO;2

Mabee P.M., 2000, Phylogenetic Analysis of Morphological Data, 84

Mabee P.M., Phenotype ontologies: the bridge between genomics and evolution, TRENDS in Ecology and Evolution

10.1093/sysbio/42.2.166

10.1093/sysbio/42.4.576

Maddison W.P., 1992, Macclade: Analysis of Phylogeny and Character Evolution

Mayr E., 1953, Methods and Principles of Systematic Zoology

McGhee G.R., 1999, Theoretical Morphology: The Concept and its Applications

10.1111/j.1558-5646.1957.tb02884.x

Miyamoto M.M., 1991, Phylogenetic Analyses and DNA Sequences

10.1146/annurev.es.22.110191.001305

10.2307/2412883

Nelson G.J., 1981, Systematics and Biogeography

10.2307/2413066

Owen R., 1843, Lectures on Comparative Anatomy and Physiology of the Invertebrate Animals

Patterson C., 1982, Problems of Phylogenetic Reconstruction, 21

Paterson T., 1997, Data Integration in the Life Sciences, 63

10.1111/j.1096-0031.1987.tb00508.x

10.1111/j.1096-0031.1991.tb00045.x

10.2307/2412566

10.1111/j.1096-0031.1995.tb00092.x

Poe S., 2000, Phylogenetic Analysis of Morphological Data, 20

10.1111/j.1096-0031.1990.tb00549.x

10.1086/375467

10.1016/B978-0-08-057430-1.50008-1

10.1046/j.1095-8312.2002.00006.x

10.2307/2413298

10.2307/2418787

Scotland R., 2000, Homology and Systematics

10.1093/sysbio/42.2.155

Sneath P.H.A., 1973, Numerical Taxonomy: The Principles and Practice of Numerical Classification

Sokal R.R., 1963, Numerical Taxonomy

10.2307/2419343

Stevens P.F., 2000, Homology and Systematics., 81

Stuessy T.F., 1990, Plant Taxonomy: The Systematic Evaluation of Comparative Data

Swiderski D.L., 1998, Why morphometrics isn't special: coding quantitative data for phylogenetics, Syst. Biol, 47, 508

Swofford D.L., 1992, Systematics, Historical Ecology and North American Freshwater Fishes, 187

10.1111/j.1096-0031.1993.tb00226.x

10.1146/annurev.es.20.110189.000411

10.1016/B978-012730055-9/50008-2

Wagner G.P., 2001, The Character Concept in Evolutionary Biology

10.1111/j.1096-0031.1995.tb00089.x

10.2307/2413595

10.1201/9780203643037.ch5

10.2307/2412764

Wiley E.O., 1981, Phylogenetics: the Theory and Practice of Phylogenetic Systematics

10.1111/j.1096-0031.1995.tb00091.x

Williams D.M., 2000, Homology and Systematics., 183

Woodger J.H., 1952, Science without properties, Br. J. Philos. Sci, 2, 193, 10.1093/bjps/II.7.193

10.1093/sysbio/44.2.179