Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways
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Fuqua WC, Winans SC, Greenberg EP: Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol. 1994, 176: 269-275.
Whitehead NA, Barnard AM, Slater H, Simpson NJ, Salmond GP: Quorum-sensing in Gram-negative bacteria. FEMS Microbiol Rev. 2001, 25: 365-404. 10.1016/S0168-6445(01)00059-6.
Mok KC, Wingreen NS, Bassler BL: Vibrio harveyi quorum sensing: a coincidence detector for two autoinducers controls gene expression. EMBO J. 2003, 22: 870-881. 10.1093/emboj/cdg085.
Miller MB, Skorupski K, Lenz DH, Taylor RK, Bassler BL: Parallel quorum sensing systems converge to regulate virulence in Vibrio cholerae. Cell. 2002, 110: 303-314. 10.1016/S0092-8674(02)00829-2.
Zhu J, Miller MB, Vance RE, Dziejman M, Bassler BL, Mekalanos JJ: Quorum-sensing regulators control virulence gene expression in Vibrio cholerae. Proc Natl Acad Sci U S A. 2002, 99: 3129-3134. 10.1073/pnas.052694299.
Chen X, Schauder S, Potier N, Van Dorsselaer A, Pelczer I, Bassler BL, Hughson FM: Structural identification of a bacterial quorum-sensing signal containing boron. Nature. 2002, 415: 545-549. 10.1038/415545a.
Bassler BL, Greenberg EP, Stevens AM: Cross-species induction of luminescence in the quorum-sensing bacterium Vibrio harveyi. J Bacteriol. 1997, 179: 4043-4045.
Surette MG, Miller MB, Bassler BL: Quorum sensing in Escherichia coli, Salmonella typhimurium, and Vibrio harveyi: a new family of genes responsible for autoinducer production. Proc Natl Acad Sci U S A. 1999, 96: 1639-1644. 10.1073/pnas.96.4.1639.
DeLisa MP, Wu CF, Wang L, Valdes JJ, Bentley WE: DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. J Bacteriol. 2001, 183: 5239-5247. 10.1128/JB.183.18.5239-5247.2001.
DeLisa MP, Valdes JJ, Bentley WE: Mapping stress-induced changes in autoinducer AI-2 production in chemostat-cultivated Escherichia coli K-12. J Bacteriol. 2001, 183: 2918-2928. 10.1128/JB.183.9.2918-2928.2001.
Sperandio V, Torres AG, Jarvis B, Nataro JP, Kaper JB: Bacteria-host communication: the language of hormones. Proc Natl Acad Sci U S A. 2003, 100: 8951-8956. 10.1073/pnas.1537100100.
Lyon WR, Madden JC, Levin JC, Stein JL, Caparon MG: Mutation of luxS affects growth and virulence factor expression in Streptococcus pyogenes. Mol Microbiol. 2001, 42: 145-157. 10.1046/j.1365-2958.2001.02616.x.
Marouni MJ, Sela S: The luxS gene of Streptococcus pyogenes regulates expression of genes that affect internalization by epithelial cells. Infect Immun. 2003, 71: 5633-5639. 10.1128/IAI.71.10.5633-5639.2003.
Stroeher UH, Paton AW, Ogunniyi AD, Paton JC: Mutation of luxS of Streptococcus pneumoniae affects virulence in a mouse model. Infect Immun. 2003, 71: 3206-3212. 10.1128/IAI.71.6.3206-3212.2003.
Winzer K, Sun YH, Green A, Delory M, Blackley D, Hardie KR, Baldwin TJ, Tang CM: Role of Neisseria meningitidis luxS in cell-to-cell signaling and bacteremic infection. Infect Immun. 2002, 70: 2245-2248. 10.1128/IAI.70.4.2245-2248.2002.
Ohtani K, Hayashi H, Shimizu T: The luxS gene is involved in cell-cell signalling for toxin production in Clostridium perfringens. Mol Microbiol. 2002, 44: 171-179. 10.1046/j.1365-2958.2002.02863.x.
Hubner A, Revel AT, Nolen DM, Hagman KE, Norgard MV: Expression of a luxS gene is not required for Borrelia burgdorferi infection of mice via needle inoculation. Infect Immun. 2003, 71: 2892-2896. 10.1128/IAI.71.5.2892-2896.2003.
Burgess NA, Kirke DF, Williams P, Winzer K, Hardie KR, Meyers NL, Aduse-Opoku J, Curtis MA, Camara M: LuxS-dependent quorum sensing in Porphyromonas gingivalis modulates protease and haemagglutinin activities but is not essential for virulence. Microbiology. 2002, 148: 763-772.
Day WA Jr, Maurelli AT: Shigella flexneri LuxS quorum-sensing system modulates virB expression but is not essential for virulence. Infect Immun. 2001, 69: 15-23. 10.1128/IAI.69.1.15-23.2001.
Taga ME, Semmelhack JL, Bassler BL: The LuxS-dependent autoinducer AI-2 controls the expression of an ABC transporter that functions in AI-2 uptake in Salmonella typhimurium. Mol Microbiol. 2001, 42: 777-793. 10.1046/j.1365-2958.2001.02669.x.
Freeman JA, Bassler BL: Sequence and function of LuxU: a two-component phosphorelay protein that regulates quorum sensing in Vibrio harveyi. J Bacteriol. 1999, 181: 899-906.
Freeman JA, Lilley BN, Bassler BL: A genetic analysis of the functions of LuxN: a two-component hybrid sensor kinase that regulates quorum sensing in Vibrio harveyi. Mol Microbiol. 2000, 35: 139-149. 10.1046/j.1365-2958.2000.01684.x.
Lilley BN, Bassler BL: Regulation of quorum sensing in Vibrio harveyi by LuxO and sigma-54. Mol Microbiol. 2000, 36: 940-954. 10.1046/j.1365-2958.2000.01913.x.
Lenz DH, Mok KC, Lilley BN, Kulkarni RV, Wingreen NS, Bassler BL: The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell. 2004, 118: 69-82. 10.1016/j.cell.2004.06.009.
Winzer K, Hardie KR, Burgess N, Doherty N, Kirke D, Holden MT, Linforth R, Cornell KA, Taylor AJ, Hill PJ, Williams P: LuxS: its role in central metabolism and the in vitro synthesis of 4-hydroxy-5-methyl-3(2H)-furanone. Microbiology. 2002, 148: 909-922.
Winzer K, Hardie KR, Williams P: LuxS and autoinducer-2: their contribution to quorum sensing and metabolism in bacteria. Adv Appl Microbiol. 2003, 53: 291-396. 10.1016/S0065-2164(03)53009-X.
Duan K, Dammel C, Stein J, Rabin H, Surette MG: Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication. Mol Microbiol. 2003, 50: 1477-1491. 10.1046/j.1365-2958.2003.03803.x.
Lerat E, Moran NA: The evolutionary history of quorum-sensing systems in bacteria. Mol Biol Evol. 2004, 21: 903-913. 10.1093/molbev/msh097.
Cannon SB, Young ND: OrthoParaMap: distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies. BMC Bioinformatics. 2003, 4: 35-10.1186/1471-2105-4-35.
Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F: The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci U S A. 2002, 99: 14422-14427. 10.1073/pnas.212527599.
Jones MB, Blaser MJ: Detection of a luxS-signaling molecule in Bacillus anthracis. Infect Immun. 2003, 71: 3914-3919. 10.1128/IAI.71.7.3914-3919.2003.
DeKeersmaecker SC, Vanderleyden J: Constraints on detection of autoinducer-2 (AI-2) signalling molecules using Vibrio harveyi as a reporter. Microbiology. 2003, 149: 1953-1956. 10.1099/mic.0.C0117-0.
Frias J, Olle E, Alsina M: Periodontal pathogens produce quorum sensing signal molecules. Infect Immun. 2001, 69: 3431-3434. 10.1128/IAI.69.5.3431-3434.2001.
Mitsumori M, Xu L, Kajikawa H, Kurihara M, Tajima K, Hai J, Takenaka A: Possible quorum sensing in the rumen microbial community: detection of quorum-sensing signal molecules from rumen bacteria. FEMS Microbiol Lett. 2003, 219: 47-52. 10.1016/S0378-1097(02)01192-8.
Sperandio V, Mellies JL, Nguyen W, Shin S, Kaper JB: Quorum sensing controls expression of the type III secretion gene transcription and protein secretion in enterohemorrhagic and enteropathogenic Escherichia coli. Proc Natl Acad Sci U S A. 1999, 96: 15196-15201. 10.1073/pnas.96.26.15196.
Sperandio V, Torres AG, Giron JA, Kaper JB: Quorum sensing is a global regulatory mechanism in enterohemorrhagic Escherichia coli O157:H7. J Bacteriol. 2001, 183: 5187-5197. 10.1128/JB.183.17.5187-5197.2001.
Sperandio V, Li CC, Kaper JB: Quorum-sensing Escherichia coli regulator A: a regulator of the LysR family involved in the regulation of the locus of enterocyte effacement pathogenicity island in enterohemorrhagic E. coli. Infect Immun. 2002, 70: 3085-3093. 10.1128/IAI.70.6.3085-3093.2002.
Sperandio V, Torres AG, Kaper JB: Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli. Mol Microbiol. 2002, 43: 809-821. 10.1046/j.1365-2958.2002.02803.x.
Taga ME, Miller ST, Bassler BL: Lsr-mediated transport and processing of AI-2 in Salmonella typhimurium. Mol Microbiol. 2003, 50: 1411-1427. 10.1046/j.1365-2958.2003.03781.x.
Rivera MC, Jain R, Moore JE, Lake JA: Genomic evidence for two functionally distinct gene classes. Proc Natl Acad Sci U S A. 1998, 95: 6239-6244. 10.1073/pnas.95.11.6239.
Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987, 4: 406-425.
The KEGG database. [http://www.genome.ad.jp/kegg]
The EMBL database. [http://www.ebi.ac.uk/genomes]
The ERGO database. [http://www.integratedgenomics.com]
The non-redundant protein database of NCBI (nr). [http://www.ncbi.nlm.nih.gov]
The KEGG Sequence Similarity Database (SSDB). [http://ssdb.genome.ad.jp]