Immune profile and responses of a novel dengue DNA vaccine encoding an EDIII-NS1 consensus design based on Indo-African sequences
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Polack, 2020, Safety and efficacy of the BNT162b2 mRNA Covid-19 vaccine, N. Engl. J. Med., 383, 2603, 10.1056/NEJMoa2034577
Silveira, 2021, DNA vaccines against COVID-19: perspectives and challenges, Life Sci., 267, 118919, 10.1016/j.lfs.2020.118919
Barros-Martins, 2021, Humoral and cellular immune response against SARS-CoV-2 variants following heterologous and homologous ChAdOx1 nCoV-19/BNT162b2 vaccination, medRxiv
Schmidt, 2021, Immunogenicity and reactogenicity of heterologous ChAdOx1 nCoV-19/mRNA vaccination, Nat. Med., 2021, 1
Restifo, 2000, The promise of nucleic acid vaccines, Gene Ther., 7, 89, 10.1038/sj.gt.3301117
Flingai, 2013, Synthetic DNA vaccines: improved vaccine potency by electroporation and co-delivered genetic adjuvants, Front. Immunol., 4, 354, 10.3389/fimmu.2013.00354
Momin, 2021, Safety and immunogenicity of a DNA SARS-CoV-2 vaccine (ZyCoV-D): results of an open-label, non-randomized phase I part of phase I/II clinical study by intradermal route in healthy subjects in India, EClinicalMedicine, 38, 101020, 10.1016/j.eclinm.2021.101020
Ramanathan, 2009, Development of a novel DNA SynCon™ tetravalent dengue vaccine that elicits immune responses against four serotypes, Vaccine, 27, 6444, 10.1016/j.vaccine.2009.06.061
Pinto, 2019, T cell responses induced by DNA vaccines based on the DENV2 e and NS1 proteins in mice: importance in protection and immunodominant epitope identification, Front. Immunol., 10, 1522, 10.3389/fimmu.2019.01522
Bhatt, 2013, The global distribution and burden of dengue, Nature, 496, 504, 10.1038/nature12060
Drumond, 2013, Circulation of different lineages of Dengue virus 2, genotype American/Asian in Brazil: dynamics and molecular and phylogenetic characterization, PLoS ONE, 8, e59422, 10.1371/journal.pone.0059422
Manakkadan, 2013, Lineage shift in Indian strains of Dengue virus serotype-3 (Genotype III), evidenced by detection of lineage IV strains in clinical cases from Kerala, Virol. J., 10, 1, 10.1186/1743-422X-10-37
Ahamed, 2019, Emergence of new genotypes and lineages of dengue viruses during the 2012–15 epidemics in southern India, Int. J. Infect. Dis., 84, S34, 10.1016/j.ijid.2019.01.014
Dias, 2018, Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum, Wellcome Open Res., 3, 44, 10.12688/wellcomeopenres.14438.1
Kar, 2019, Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi, Int. J. Infect. Dis., 84, S25, 10.1016/j.ijid.2018.12.003
Alagarasu, 2021, Serotype and genotype diversity of dengue viruses circulating in India: a multi-centre retrospective study involving the Virus Research Diagnostic Laboratory Network in 2018, Int. J. Infect. Dis., 111, 242, 10.1016/j.ijid.2021.08.045
Shrivastava, 2018, Co-circulation of all the four dengue virus serotypes and detection of a novel clade of DENV-4 (genotype I) virus in Pune, India during 2016 season, PLoS ONE, 13, e0192672, 10.1371/journal.pone.0192672
2019, Dengue vaccine: WHO position paper, September 2018-Recommendations, Vaccine, 37, 4848, 10.1016/j.vaccine.2018.09.063
Fahimi, 2018, Dengue viruses and promising envelope protein domain III-based vaccines, Appl. Microbiol. Biotechnol., 1027, 2977, 10.1007/s00253-018-8822-y
Ramasamy, 2018, A tetravalent virus-like particle vaccine designed to display domain III of dengue envelope proteins induces multi-serotype neutralizing antibodies in mice and macaques which confer protection against antibody dependent enhancement in AG129 mice, Plos Negl. Trop. Dis., 12, e0006191, 10.1371/journal.pntd.0006191
Chen, 2015, The immunodominance change and protection of CD4+ T-cell responses elicited by an envelope protein domain III-based tetravalent dengue vaccine in mice, PLoS ONE, 10, e0145717, 10.1371/journal.pone.0145717
Gallichotte, 2019, Role of zika virus envelope protein domain III as a target of human neutralizing antibodies, MBio, 10, e01485, 10.1128/mBio.01485-19
Lin, 2003, A functional epitope determinant on domain III of the Japanese encephalitis virus envelope protein interacted with neutralizing-antibody combining sites, J. Virol., 77, 2600, 10.1128/JVI.77.4.2600-2606.2003
Gromowski, 2010, Mutations of an antibody binding energy hot spot on domain III of the dengue 2 envelope glycoprotein exploited for neutralization escape, Virology, 407, 237, 10.1016/j.virol.2010.06.044
Chen, 2018, Dengue virus non-structural protein 1: a pathogenic factor, therapeutic target, and vaccine candidate, J. Biomed. Sci., 25, 1, 10.1186/s12929-018-0462-0
Wan, 2014, Protection against dengue virus infection in mice by administration of antibodies against modified nonstructural protein 1, PLoS ONE, 9, e92495, 10.1371/journal.pone.0092495
Grubor-Bauk, 2019, NS1 DNA vaccination protects against Zika infection through T cell–mediated immunity in immunocompetent mice, Sci. Adv., 5, eaax2388, 10.1126/sciadv.aax2388
Beatty, 2015, Dengue virus NS1 triggers endothelial permeability and vascular leak that is prevented by NS1 vaccination, Sci. Transl. Med., 7, 304ra141, 10.1126/scitranslmed.aaa3787
Lai, 2017, Antibodies against modified NS1 wing domain peptide protect against dengue virus infection, Sci. Rep., 7, 1, 10.1038/s41598-017-07308-3
Weaver, 2011, Protection against divergent influenza H1N1 virus by a centralized influenza hemagglutinin, PLoS ONE, 6, e18314, 10.1371/journal.pone.0018314
Meyerhoff, 2017, HIV-1 consensus envelope-induced broadly binding antibodies, AIDS Res. Hum. Retroviruses, 33, 859, 10.1089/aid.2016.0294
Wang, 2019, Vaccination with a single consensus envelope protein ectodomain sequence administered in a heterologous regimen induces tetravalent immune responses and protection against dengue viruses in mice, Front. Microbiol., 0, 1113, 10.3389/fmicb.2019.01113
Moutaftsi, 2006, A consensus epitope prediction approach identifies the breadth of murine T CD8+-cell responses to vaccinia virus, Nat. Biotechnol., 24, 817, 10.1038/nbt1215
Singla, 2016, Immune response to dengue virus infection in pediatric patients in New Delhi, India—association of viremia, inflammatory mediators and monocytes with disease severity, Plos Negl. Trop. Dis., 10, e0004497, 10.1371/journal.pntd.0004497
Shastri, 2017, Nine year trends of dengue virus infection in Mumbai, Western India, J. Lab. Physicians, 9, 296, 10.4103/JLP.JLP_169_16
Masika, 2020, Detection of dengue virus type 2 of Indian origin in acute febrile patients in rural Kenya, Plos Negl. Trop. Dis., 14, e0008099, 10.1371/journal.pntd.0008099
Renner, 2018, Characterization of a potent and highly unusual minimally-enhancing antibody directed against dengue virus, Nat. Immunol., 19, 1248, 10.1038/s41590-018-0227-7
Wahala, 2010, Natural strain variation and antibody neutralization of dengue serotype 3 viruses, PLOS Pathog., 6, e1000821, 10.1371/journal.ppat.1000821
Zhou, 2013, The mechanism of differential neutralization of dengue serotype 3 strains by monoclonal antibody 8A1, Virology, 439, 57, 10.1016/j.virol.2013.01.022
Sukupolvi-Petty, 2013, Functional analysis of antibodies against dengue virus type 4 reveals strain-dependent epitope exposure that impacts neutralization and protection, J. Virol., 87, 8826, 10.1128/JVI.01314-13
Chao, 2005, Strategically examining the full-genome of dengue virus type 3 in clinical isolates reveals its mutation spectra, Virol. J., 2, 1, 10.1186/1743-422X-2-72
Roehrig, 2008, Guidelines for plaque-reduction neutralization testing of human antibodies to dengue viruses, Viral Immunol., 21, 123, 10.1089/vim.2008.0007
Querec, 2009, Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans, Nat. Immunol., 10, 116, 10.1038/ni.1688
Diamond, 2000, Modulation of dengue virus infection in human cells by alpha, beta, and gamma interferons, J. Virol., 74, 4957, 10.1128/JVI.74.11.4957-4966.2000
Sharma, 1996, Interleukin-4 mediates down regulation of antiviral cytokine expression and cytotoxic T-lymphocyte responses and exacerbates vaccinia virus infection in vivo, J. Virol., 70, 7103, 10.1128/jvi.70.10.7103-7107.1996
Rosenthal, 2006, Vaccines: all things considered, Clin. Vaccin. Immunol., 13, 821, 10.1128/CVI.00152-06
de Alwis, 2021, A single dose of self-transcribing and replicating RNA-based SARS-CoV-2 vaccine produces protective adaptive immunity in mice, Mol. Ther., 29, 1970, 10.1016/j.ymthe.2021.04.001
Krathwohl, 2006, Chemokine CXCL10 (IP-10) is sufficient to trigger an immune response to injected antigens in a mouse model, Vaccine, 24, 2987, 10.1016/j.vaccine.2005.11.032
Inoue, 2004, SOCS proteins in T helper cell differentiation: implications for allergic disorders?, Expert Rev. Mol. Med., 6, 1, 10.1017/S1462399404008348
Ford, 2019, CCL7 is a negative regulator of cutaneous inflammation following Leishmania major infection, Front. Immunol., 10, 3063, 10.3389/fimmu.2018.03063
Mahmood, 2018, Multifaceted role of the urokinase-type plasminogen activator (uPA) and its receptor (uPAR): diagnostic, prognostic, and therapeutic applications, Front. Oncol., 8, 24, 10.3389/fonc.2018.00024
Andresen, 2011, Increased expression of beta-defensin 1 (DEFB1) in chronic obstructive pulmonary disease, PLoS ONE, 6, e21898, 10.1371/journal.pone.0021898
Loyet, 2005, Proteomic profiling of surface proteins on Th1 and Th2 Cells, J. Proteome Res., 4, 400, 10.1021/pr049810q
Urata, 2018, BST-2 controls T cell proliferation and exhaustion by shaping the early distribution of a persistent viral infection, Plos Pathog., 14, e1007172, 10.1371/journal.ppat.1007172
Salem, 2011, Interferon regulatory factor-7 modulates experimental autoimmune encephalomyelitis in mice, J. Neuroinflammation, 8, 1, 10.1186/1742-2094-8-181
Vander Ark, 2018, TGF-β receptors: in and beyond TGF-β signaling, Cell Signal., 52, 112, 10.1016/j.cellsig.2018.09.002
Kong, 2018, Emerging roles of vascular cell adhesion molecule-1 (VCAM-1) in immunological disorders and cancer, Int. J. Mol. Sci., 19, 1057, 10.3390/ijms19041057
Peters, 2009, October. CD40 and autoimmunity: the dark side of a great activator, Semin. Immunol., 21, 293, 10.1016/j.smim.2009.05.012
Waggoner, 2016, Homotypic dengue virus reinfections in nicaraguan children, J. Infect. Dis., 214, 986, 10.1093/infdis/jiw099
Forshey, 2016, Incomplete protection against dengue virus type 2 re-infection in Peru, Plos Negl. Trop. Dis., 10, e0004398, 10.1371/journal.pntd.0004398
Martinez, 2020, Antigenic variation of the dengue virus 2 genotypes impacts the neutralization activity of human antibodies in vaccinees, Cell Rep, 33, 108226, 10.1016/j.celrep.2020.108226
Sukupolvi-Petty, 2010, Structure and function analysis of therapeutic monoclonal antibodies against dengue virus type 2, J. Virol., 84, 9227, 10.1128/JVI.01087-10
Shrestha, 2010, The development of therapeutic antibodies that neutralize homologous and heterologous genotypes of dengue virus type 1, PLoS Pathog., 6, e1000823, 10.1371/journal.ppat.1000823
Brien, 2010, Genotype-specific neutralization and protection by antibodies against dengue virus type 3, J. Virol., 84, 10630, 10.1128/JVI.01190-10
Juraska, 2018, Viral genetic diversity and protective efficacy of a tetravalent dengue vaccine in two phase 3 trials, Proc. Natl. Acad. Sci. U S A, 115, E8378, 10.1073/pnas.1714250115
Frei, 2018, Engineered dengue virus domain III proteins elicit cross-neutralizing antibody responses in mice, J. Virol., 92, 10.1128/JVI.01023-18
Zhou, 2013, The mechanism of differential neutralization of dengue serotype 3 strains by monoclonal antibody 8A1, Virology, 439, 57, 10.1016/j.virol.2013.01.022
Wahala, 2010, Natural strain variation and antibody neutralization of dengue serotype 3 viruses, Plos Pathog., 6, 1000821, 10.1371/journal.ppat.1000821
Chan, 2019, A T164S mutation in the dengue virus NS1 protein is associated with greater disease severity in mice, Sci. Transl. Med., 11, 10.1126/scitranslmed.aat7726
Hobernik, 2018, DNA vaccines—how far from clinical use?, Int. J. Mol. Sci., 19, 3605, 10.3390/ijms19113605
Muthumani, 2008, Immunogenicity of novel consensus-based DNA vaccines against Chikungunya virus, Vaccine, 26, 5128, 10.1016/j.vaccine.2008.03.060
Tebas, 2017, Safety and immunogenicity of an anti–zika virus DNA vaccine — preliminary report, N. Engl. J. Med.
Modjarrad, 2019, Safety and immunogenicity of an anti-Middle East respiratory syndrome coronavirus DNA vaccine: a phase 1, open-label, single-arm, dose-escalation trial, Lancet Infect. Dis., 19, 1013, 10.1016/S1473-3099(19)30266-X
Smith, 2020, Immunogenicity of a DNA vaccine candidate for COVID-19, Nat. Commun., 11, 1, 10.1038/s41467-020-16505-0
Dey, 2021, Immunogenic potential of DNA vaccine candidate, ZyCoV-D against SARS-CoV-2 in animal models, Vaccine, 39, 4108, 10.1016/j.vaccine.2021.05.098
Osorio, 2011, Efficacy of a tetravalent chimeric dengue vaccine (DENVax) in cynomolgus macaques, Am. J. Trop. Med. Hyg., 84, 978, 10.4269/ajtmh.2011.10-0592
Guirakhoo, 2004, Safety and efficacy of chimeric yellow fever-dengue virus tetravalent vaccine formulations in nonhuman primates, J. Virol., 78, 4761, 10.1128/JVI.78.9.4761-4775.2004
Hellerstein, 2020, What are the roles of antibodies versus a durable, high quality T-cell response in protective immunity against SARS-CoV-2?, Vaccin. X, 6, 100076, 10.1016/j.jvacx.2020.100076
Huber, 2011, Regulation of effector and memory T-cell functions by type I interferon, Immunology, 132, 466, 10.1111/j.1365-2567.2011.03412.x
Costa, 2013, Inflammatory and innate immune responses in dengue infection: protection versus disease induction, Am. J. Pathol., 182, 1950, 10.1016/j.ajpath.2013.02.027
Foulds, 2006, Th1 memory: implications for vaccine development, Immunol. Rev., 211, 58, 10.1111/j.0105-2896.2006.00400.x
Wieten, 2016, A single 17D yellow fever vaccination provides lifelong immunity; characterization of yellow-fever-specific neutralizing antibody and T-cell responses after vaccination, PLoS ONE, 11, e0149871, 10.1371/journal.pone.0149871
Maciejewski, 2020, Distinct neutralizing antibody correlates of protection among related Zika virus vaccines identify a role for antibody quality, Sci. Transl. Med., 12, 9066, 10.1126/scitranslmed.aaw9066
Nguyen, 2015, IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies, Mol. Biol. Evol., 32, 268, 10.1093/molbev/msu300
Trifinopoulos, 2016, W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis, Nucleic Acids Res., 44, W232, 10.1093/nar/gkw256
Rambaut, 2010
Malavige, 2012, Identification of serotype-specific T cell responses to highly conserved regions of the dengue viruses, Clin. Exp. Immunol., 168, 215, 10.1111/j.1365-2249.2012.04566.x
Kringelum, 2012, Reliable B cell epitope predictions: impacts of method development and improved benchmarking, PLoS Comput. Biol., 8, e1002829, 10.1371/journal.pcbi.1002829
Bagarazzi, 2012, Immunotherapy against HPV16/18 generates potent TH1 and cytotoxic cellular immune responses, Sci. Translational Med., 4, 155ra138, 10.1126/scitranslmed.3004414
Singh, 2017, Comparative whole genome analysis of dengue virus serotype-2 strains differing in trans-endothelial cell leakage induction in vitro, Infect. Genet. Evol., 52, 34, 10.1016/j.meegid.2017.04.022