Identification of long non-coding RNA in formaldehyde-induced cardiac dysplasia in rats
Tài liệu tham khảo
Amaral, 2018, Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci, Genome Biol., 19, 32, 10.1186/s13059-018-1405-5
Anders, 2010, Differential expression analysis for sequence count data, Genome Biol., 10.1186/gb-2010-11-10-r106
Bouma, 2017, Changing landscape of congenital heart disease, Circ. Res., 120, 908, 10.1161/CIRCRESAHA.116.309302
Bridges, 2021, LNCcation: lncRNA localization and function, J. Cell Biol., 220, 10.1083/jcb.202009045
Bruemmer, 2017, Fluorescent probes for imaging formaldehyde in biological systems, Curr. Opin. Chem. Biol., 39, 17, 10.1016/j.cbpa.2017.04.010
Burkhalter, 2013, Grk5l controls heart development by limiting mTOR signaling during symmetry breaking, Cell Rep., 4, 625, 10.1016/j.celrep.2013.07.036
Buxbaum, 2015, In the right place at the right time: visualizing and understanding mRNA localization, Nat. Rev. Mol. Cell Biol., 16, 95, 10.1038/nrm3918
Cabili, 2015, Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution, Genome Biol., 16, 20, 10.1186/s13059-015-0586-4
Cao, 2009, [Micronucleus rate and chromosome aberration of mouse embryo liver induced by formaldehyde], Wei sheng yan jiu = J. Hygiene Res., 38, 667
Chen, 2016, Linking long noncoding RNA localization and function, Trends Biochem. Sci., 41, 761, 10.1016/j.tibs.2016.07.003
Cogliano, 2005, Meeting report: summary of IARC monographs on formaldehyde, 2-butoxyethanol, and 1-tert-butoxy-2-propanol, Environ. Health Perspect., 113, 1205, 10.1289/ehp.7542
Costello, 2021, Low birth weight and congenital heart disease: current status and future directions, J. Pediatr., 238, 9, 10.1016/j.jpeds.2021.08.021
Derrien, 2012, The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression, Genome Res., 22, 1775, 10.1101/gr.132159.111
Djebali, 2012, Landscape of transcription in human cells, Nature, 489, 101, 10.1038/nature11233
Dueñas, 2019, The role of non-coding RNA in congenital heart diseases, J. Cardiovasc. Dev. Dis., 6
Dulskiene, 2005, [Environmental risk factors and outdoor formaldehyde and risk of congenital heart malformations], Medicina (Kaunas, Lithuania), 41, 787
Duong, 2011, Reproductive and developmental toxicity of formaldehyde: a systematic review, Mutat. Res., 728, 118, 10.1016/j.mrrev.2011.07.003
Fan, 2020, Nuclear miR-665 aggravates heart failure via suppressing phosphatase and tensin homolog transcription, Sci. China Life Sci., 63, 724, 10.1007/s11427-018-9515-1
Fenoglio, 2013, An emerging role for long non-coding RNA dysregulation in neurological disorders, Int. J. Mol. Sci., 14, 20427, 10.3390/ijms141020427
Grote, 2013, The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse, Dev. Cell, 24, 206, 10.1016/j.devcel.2012.12.012
Gu, 2016, Circulating LncRNAs as novel, non-invasive biomarkers for prenatal detection of fetal congenital heart defects, Cell. Physiol. Biochem. : Int. J. Exp.Cell. Physiol.Biochem. Pharmacol., 38, 1459, 10.1159/000443088
Güleç, 2006, Antioxidant enzyme activities and lipid peroxidation products in heart tissue of subacute and subchronic formaldehyde-exposed rats: a preliminary study, Toxicol. Ind. Health, 22, 117, 10.1191/0748233706th248oa
Guo, 2020, Mechanisms of long noncoding RNA nuclear retention, Trends Biochem. Sci., 45, 947, 10.1016/j.tibs.2020.07.001
Guo, 2018, A linc1405/eomes complex promotes cardiac mesoderm specification and cardiogenesis, Cell Stem Cell, 22, 893, 10.1016/j.stem.2018.04.013
Han, 2014, A long noncoding RNA protects the heart from pathological hypertrophy, Nature, 514, 102, 10.1038/nature13596
Hezroni, 2015, Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species, Cell Rep., 11, 1110, 10.1016/j.celrep.2015.04.023
Jacob, 2013, Environmental cues induce a long noncoding RNA-dependent remodeling of the nucleolus, Mol. Biol. Cell, 24, 2943, 10.1091/mbc.e13-04-0223
Kalisch-Smith, 2020, Environmental risk factors for congenital heart disease, Cold Spring Harbor Perspect. Biol., 12, 10.1101/cshperspect.a037234
Kang, 2020, Ppp1r1b-lncRNA inhibits PRC2 at myogenic regulatory genes to promote cardiac and skeletal muscle development in mouse and human, RNA (New York, N.Y.), 26, 481, 10.1261/rna.073692.119
Katakura, 1993, Distribution of radioactivity from 14C-formaldehyde in pregnant mice and their fetuses, Br. J. Ind. Med., 50, 176
Klattenhoff, 2013, Braveheart, a long noncoding RNA required for cardiovascular lineage commitment, Cell, 152, 570, 10.1016/j.cell.2013.01.003
Kou, 2022, Formaldehyde toxicity in age-related neurological dementia, Ageing Res. Rev., 73, 10.1016/j.arr.2021.101512
Kruszka, 2020, The state of congenital heart disease, Am. J. Med. Genet. C Semin. Med. Genet., 184, 5, 10.1002/ajmg.c.31776
Li, 2022, miR-564: a potential regulator of vascular smooth muscle cells and therapeutic target for aortic dissection, J. Mol. Cell. Cardiol., 170, 100, 10.1016/j.yjmcc.2022.06.003
Li, 2023, CRISPR/Cas9 therapeutics: progress and prospects, Signal Transduct. Targeted Ther., 8, 36, 10.1038/s41392-023-01309-7
Li, 2022, Recent advances in targeted delivery of non-coding RNA-based therapeutics for atherosclerosis, Mol. Ther. : J. Am. Soc.Gene Ther., 30, 3118, 10.1016/j.ymthe.2022.07.018
Li, 2021, Targeting non-coding RNAs in unstable atherosclerotic plaques: mechanism, regulation, possibilities, and limitations, Int. J. Biol. Sci., 17, 3413, 10.7150/ijbs.62506
Li, 2022, Multistage-responsive nanocomplexes attenuate ulcerative colitis by improving the accumulation and distribution of oral nucleic acid drugs in the colon, ACS Appl. Mater. Interfaces, 14, 2058, 10.1021/acsami.1c21595
Li, 2022, Lactate metabolism in human health and disease, Signal Transduct. Targeted Ther., 7, 305, 10.1038/s41392-022-01151-3
Lino-dos-Santos-Franco, 2011, Differential effects of female sex hormones on cellular recruitment and tracheal reactivity after formaldehyde exposure, Toxicol. Lett., 205, 327, 10.1016/j.toxlet.2011.06.023
Liu, 2020, Knockdown of miR-665 protects against cardiomyocyte ischemia/reperfusion injury-induced ROS accumulation and apoptosis through the activation of pak1/akt signaling in myocardial infarction, Int. Heart J., 61, 347, 10.1536/ihj.19-416
Liu, 2017, HBL1 is a human long noncoding RNA that modulates cardiomyocyte development from pluripotent stem cells by counteracting MIR1, Dev. Cell, 42, 333, 10.1016/j.devcel.2017.07.023
Liu, 2006, Hedgehog and RAS pathways cooperate in the anterior-posterior specification and positioning of cardiac progenitor cells, Dev. Biol., 290, 373, 10.1016/j.ydbio.2005.11.033
Long, 2017, Long noncoding RNA Kcna2 antisense RNA contributes to ventricular arrhythmias via silencing Kcna2 in rats with congestive heart failure, J. Am. Heart Assoc., 6, 10.1161/JAHA.117.005965
Ma, 2020, Hypermethylation-mediated down-regulation of lncRNA TBX5-AS1:2 in Tetralogy of Fallot inhibits cell proliferation by reducing TBX5 expression, J. Cell Mol. Med., 24, 6472, 10.1111/jcmm.15298
Ma, 2021, Long non-coding RNA SAP30-2:1 is downregulated in congenital heart disease and regulates cell proliferation by targeting HAND2, Front. Med., 15, 91, 10.1007/s11684-020-0778-5
Mao, 2005, Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary, Bioinformatics, 21, 3787, 10.1093/bioinformatics/bti430
McMartin, 1998, Pregnancy outcome following maternal organic solvent exposure: a meta-analysis of epidemiologic studies, Am. J. Ind. Med., 34, 288, 10.1002/(SICI)1097-0274(199809)34:3<288::AID-AJIM12>3.0.CO;2-Q
Mercer, 2009, Long non-coding RNAs: insights into functions, Nat. Rev. Genet., 10, 155, 10.1038/nrg2521
Mohamed, 2019, Wnt Signaling: the double-edged sword diminishing the potential of stem cell therapy in congenital heart disease, Life Sci., 239, 10.1016/j.lfs.2019.116937
Monfared, 2014, Histomorphological and ultrastructural changes of the placenta in mice exposed to formaldehyde, Toxicol. Ind. Health, 30, 174, 10.1177/0748233712452603
Mukherjee, 2017, Integrative classification of human coding and noncoding genes through RNA metabolism profiles, Nat. Struct. Mol. Biol., 24, 86, 10.1038/nsmb.3325
Necsulea, 2014, The evolution of lncRNA repertoires and expression patterns in tetrapods, Nature, 505, 635, 10.1038/nature12943
Noh, 2018, Cytoplasmic functions of long noncoding RNAs, Wiley Interdiscip. Rev. RNA, 9, 10.1002/wrna.1471
Ounzain, 2015, CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis, J. Mol. Cell. Cardiol., 89, 98, 10.1016/j.yjmcc.2015.09.016
Pidoux, 2015, Formaldehyde crosses the human placenta and affects human trophoblast differentiation and hormonal functions, PLoS One, 10, 10.1371/journal.pone.0133506
Ponnusamy, 2019, Long noncoding RNA CPR (cardiomyocyte proliferation regulator) regulates cardiomyocyte proliferation and cardiac repair, Circulation, 139, 2668, 10.1161/CIRCULATIONAHA.118.035832
Qing, 2003, Intramyocardial synthesis of pro- and anti-inflammatory cytokines in infants with congenital cardiac defects, J. Am. Coll. Cardiol., 41, 2266, 10.1016/S0735-1097(03)00477-7
Ramos-Kuri, 2021, Molecules linked to Ras signaling as therapeutic targets in cardiac pathologies, Biol. Res., 54, 23, 10.1186/s40659-021-00342-6
Rinn, 2012, Genome regulation by long noncoding RNAs, Annu. Rev. Biochem., 81, 145, 10.1146/annurev-biochem-051410-092902
Rizki, 2015, Lncing epigenetic control of transcription to cardiovascular development and disease, Circ. Res., 117, 192, 10.1161/CIRCRESAHA.117.304156
Saillenfait, 1989, The effects of maternally inhaled formaldehyde on embryonal and foetal development in rats, Food Chem. Toxicol. : Int. J.Pub.Br.Ind.Biol. Res.Assoc., 27, 545, 10.1016/0278-6915(89)90051-3
Sanchez-Soria, 2010, ErbB signaling in cardiac development and disease, Semin. Cell Dev. Biol., 21, 929, 10.1016/j.semcdb.2010.09.011
Schmitt, 2016, Long noncoding RNAs in cancer pathways, Cancer Cell, 29, 452, 10.1016/j.ccell.2016.03.010
Shaw, 2003, Maternal occupational chemical exposures and biotransformation genotypes as risk factors for selected congenital anomalies, Am. J. Epidemiol., 157, 475, 10.1093/aje/kwg013
Sorg, 2004, Repeated low level formaldehyde exposure produces enhanced fear conditioning to odor in male, but not female, rats, Brain Res., 1008, 11, 10.1016/j.brainres.2004.02.015
Sun, 2015, Congenital heart disease: causes, diagnosis, symptoms, and treatments, Cell Biochem. Biophys., 72, 857, 10.1007/s12013-015-0551-6
Swenberg, 2013, Formaldehyde carcinogenicity research: 30 years and counting for mode of action, epidemiology, and cancer risk assessment, Toxicol. Pathol., 41, 181, 10.1177/0192623312466459
Thrasher, 2001, Embryo toxicity and teratogenicity of formaldehyde, Arch. Environ. Health, 56, 300, 10.1080/00039890109604460
Tikkanen, 1992, Risk factors for conal malformations of the heart, Eur. J. Epidemiol., 8, 48, 10.1007/BF03334972
Til, 1989, Two-year drinking-water study of formaldehyde in rats, Food Chem. Toxicol. : Int. J.Pub.Br.Ind.Biol. Res.Assoc., 27, 77, 10.1016/0278-6915(89)90001-X
Toni, 2020, Dysregulated micro-RNAs and long noncoding RNAs in cardiac development and pediatric heart failure, Am. J. Physiol. Heart Circ. Physiol., 318, H1308, 10.1152/ajpheart.00511.2019
Tulpule, 2013, Formaldehyde in brain: an overlooked player in neurodegeneration?, J. Neurochem., 127, 7, 10.1111/jnc.12356
Uchida, 2015, Long noncoding RNAs in cardiovascular diseases, Circ. Res., 116, 737, 10.1161/CIRCRESAHA.116.302521
Ulitsky, 2016, Evolution to the rescue: using comparative genomics to understand long non-coding RNAs, Nat. Rev. Genet., 17, 601, 10.1038/nrg.2016.85
van der Bom, 2011, The changing epidemiology of congenital heart disease, Nat. Rev. Cardiol., 8, 50, 10.1038/nrcardio.2010.166
Wamstad, 2012, Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage, Cell, 151, 206, 10.1016/j.cell.2012.07.035
Wang, 2014, CARL lncRNA inhibits anoxia-induced mitochondrial fission and apoptosis in cardiomyocytes by impairing miR-539-dependent PHB2 downregulation, Nat. Commun., 5, 3596, 10.1038/ncomms4596
Wang, 2014, MDRL lncRNA regulates the processing of miR-484 primary transcript by targeting miR-361, PLoS Genet., 10, 10.1371/journal.pgen.1004467
Wang, 2017, Targeting the hedgehog signaling pathway for cardiac repair and regeneration, Herz, 42, 662, 10.1007/s00059-016-4500-y
Weismann, 2007, The genetics of congenital heart disease: a review of recent developments, Curr. Opin. Cardiol., 22, 200, 10.1097/HCO.0b013e3280f629c7
Wu, 2017, Vitamin E reversed apoptosis of cardiomyocytes induced by exposure to high dose formaldehyde during mice pregnancy, Int. Heart J., 58, 769, 10.1536/ihj.16-279
Wu, 2017, The diversity of long noncoding RNAs and their generation, Trends Genet. : TIG (Trends Genet.), 33, 540, 10.1016/j.tig.2017.05.004
Xing, 2014, lncRNA directs cooperative epigenetic regulation downstream of chemokine signals, Cell, 159, 1110, 10.1016/j.cell.2014.10.013
Xu, 2017, Association between formaldehyde exposure and miscarriage in Chinese women, Medicine, 96
Yang, 2014, Long noncoding RNAs: fresh perspectives into the RNA world, Trends Biochem. Sci., 39, 35, 10.1016/j.tibs.2013.10.002
Yang, 2021, miR-153-3p targets βII spectrin to regulate formaldehyde-induced cardiomyocyte apoptosis, Front. Cardiovasc.Med., 8, 10.3389/fcvm.2021.764831
Yang, 2022, The lncRNA punisher regulates apoptosis and mitochondrial homeostasis of vascular smooth muscle cells via targeting miR-664a-5p and OPA1, Oxid. Med. Cell. Longev., 2022
Yoo, 2018, Epidemiology of congenital heart disease with emphasis on sex-related aspects, Adv. Exp. Med. Biol., 1065, 49, 10.1007/978-3-319-77932-4_3
Yu, 2012, clusterProfiler: an R package for comparing biological themes among gene clusters, OMICS A J. Integr. Biol., 16, 284, 10.1089/omi.2011.0118
Zaidi, 2017, Genetics and genomics of congenital heart disease, Circ. Res., 120, 923, 10.1161/CIRCRESAHA.116.309140
Zhang, 2018, Long non-coding RNA CCRR controls cardiac conduction via regulating intercellular coupling, Nat. Commun., 9, 4176, 10.1038/s41467-018-06637-9
Zhang, 2021, The cellular function and molecular mechanism of formaldehyde in cardiovascular disease and heart development, J. Cell Mol. Med., 25, 5358, 10.1111/jcmm.16602
Zhang, 2022, Comprehensive profile of circRNAs in formaldehyde induced heart development, Food Chem. Toxicol. : Int. J.Pub.Br.Ind.Biol. Res.Assoc., 162, 10.1016/j.fct.2022.112899
Zhao, 2021, Melatonin inhibits embryonic rat H9c2 cells growth through induction of apoptosis and cell cycle arrest via PI3K-AKT signaling pathway, Birth Defects Res, 113, 1171, 10.1002/bdr2.1938
Zhou, 2017, Gata4 potentiates second heart field proliferation and Hedgehog signaling for cardiac septation, Proc. Natl. Acad. Sci. U.S.A., 114, E1422, 10.1073/pnas.1605137114
Zhu, 2018, Long noncoding RNA MALAT1 downregulates cardiac transient outward potassium current by regulating miR-200c/HMGB1 pathway, J. Cell. Biochem., 119, 10239, 10.1002/jcb.27366
Zhu, 2014, Differential expression profile of long non-coding RNAs during differentiation of cardiomyocytes, Int. J. Med. Sci., 11, 500, 10.7150/ijms.7849
Zuckerman, 2019, Predictive models of subcellular localization of long RNAs, RNA (New York, N.Y.), 25, 557, 10.1261/rna.068288.118