Identification and characterization of a stachyose synthase gene controlling reduced stachyose content in soybean

Theoretical and Applied Genetics - Tập 128 - Trang 2167-2176 - 2015
Dan Qiu1, Tri Vuong1, Babu Valliyodan1, Haiying Shi1, Binhui Guo1, J. Grover Shannon2, Henry T. Nguyen1
1Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri, Columbia, USA
2Division of Plant Sciences and NCSB, University of Missouri, Portageville, USA

Tóm tắt

We identified and characterized a mutant of soybean stachyose synthase gene controlling reduced stachyose content which benefit the soybean seed composition breeding program in the future. It has been shown that in soybean, increased sucrose and reduced raffinose family oligosaccharides would have a positive impact on the world’s feed industry by improving digestibility and feed efficiency. We searched for new sources of modified oligosaccharide content in a subset of the USDA Soybean Germplasm Collection and then identified plant introduction (PI) 603176A as having ultra-low stachyose content (0.5 %). We identified a 33-bp deletion mutant in the putative stachyose synthase gene (STS gene, Glyma19g40550) of PI 603176A. A co-dominate indel marker was successfully developed from this 33-bp deletion area and was genetically mapped into two F 2:3 populations and a F 4:5 population, which associated with low stachyose content in the progeny lines. These observations provided strong evidence that the STS gene is responsible for stachyose biosynthesis in the soybean plant. Expression of the sts gene remained at the normal level, suggesting the loss of function in the gene is due to defective protein function. This gene-based perfect genetic marker for low stachyose content can be useful for marker-assisted selection in soybean molecular breeding programs.

Tài liệu tham khảo

Bentsink L, Alonso-Blanco C, Vreugdenhil D, Tesnier K, Groot SP, Koornneef M (2000) Genetic analysis of seed-soluble oligosaccharides in relation to seed storability of Arabidopsis. Plant Physiol 124:1595–1604 Coon CN, Leske KL, Akavanichan O, Cheng TK (1990) Effect of oligosaccharide-free soybean meal on true metabolizable energy and fiber digestion in adult roosters. Poult Sci 69:787–793 Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139:5–17 Dierking EC, Bilyeu KD (2008) Association of a soybean raffinose synthase gene with low raffinose and stachyose seed phenotype. Plant Genome J 1:135 Elsayed AI, Rafudeen MS, Golldack D (2013) Physiological aspects of raffinose family oligosaccharides in plants: protection against abiotic stress. Plant Biol 16:1–8 Fehr WR, Caviness CE (1977) Stages of soybean development. Coop Ext Serv Spec Rep 80 Iowa State Univ, Ames Guimaraes VM, de Rezende ST, Moreira MA, de Barros EG, Felix CR (2001) Characterization of alpha-galactosidases from germinating soybean seed and their use for hydrolysis of oligosaccharides. Phytochemistry 58:67–73 Hartwig EE, Kuo TM, Kenty MM (1997) Seed protein and its relationship to soluble sugars in soybean. Crop Sci 37:770–773 Hitz WD, Carlson TJ, Kerr PS, Sebastian SA (2002) Biochemical and molecular characterization of a mutation that confers a decreased raffinosaccharide and phytic acid phenotype on soybean seeds. Plant Physiol 128:650–660 Hou A, Chen P, Alloatti J, Li D, Mozzoni L, Zhang B, Shi A (2009) Genetic variability of seed sugar content in worldwide soybean germplasm collections. Crop Sci 49:903 Hymowitz T, Collins FI (1974) Variability of sugar content in seed of Glycine max (L.) Merril and G. soja Sieb and Zucc. Agron J 64:613–616 Iftime D, Hannah MA, Peterbauer T, Heyer AG (2011) Stachyose in the cytosol does not influence freezing tolerance of transgenic Arabidopsis expressing stachyose synthase from adzuki bean. Plant Sci Int J Exp Plant Biol 180:24–30 Karner U, Peterbauer T, Raboy V, Jones DA, Hedley CL, Richter A (2004) myo-Inositol and sucrose concentrations affect the accumulation of raffinose family oligosaccharides in seeds. J Exp Bot 55:1981–1987 Kerr PS, Sebastian A (2000) Soybean products with improved carbohydrate composition and soybean plants. US Patent 6147193 A Li S, Kim WD, Kaneko S, Prema PA, Nakajima M, Kobayashi H (2007) Expression of rice (Oryza sativa L. var. Nipponbare) alpha-galactosidase genes in Escherichia coli and characterization. Biosci Biotechnol Biochem 71:520–526 Meis SJ, Fehr WR, Schnebly SR (2003) Seed source effect on field emergence of soybean lines with reduced phytate and raffinose saccharides. Crop Sci 43:1336–1339 Minorsky PV (2003) The hot and the classic. Plant Physiol 132:25–26 Parsons CM, Zhang Y, Araba M (2000) Nutritional evaluation of soybean meals varying in oligosaccharide content. Poult Sci 79:1127–1131 Peterbauer T, Mucha J, Mayer U, Popp M, Glossl J, Richter A (1999) Stachyose synthesis in seeds of adzuki bean (Vigna angularis): molecular cloning and functional expression of stachyose synthase. Plant J Cell Mol Biol 20:509–518 Peterbauer T, Mach L, Mucha J, Richter A (2002) Functional expression of a cDNA encoding pea (Pisum sativum L.) raffinose synthase, partial purification of the enzyme from maturing seeds, and steady-state kinetic analysis of raffinose synthesis. Planta 215:839–846 Schillinger JA, Dierking EC, Bilyeu KD (2011) Soybeans having high germination rates and ultra-low raffinose and stachyose content. US Patent US20110003045 A1 Sebastian SA, Kerr PS, Pearlstein RW, Hitz WD (2000) Soybean germplasm with novel genes for improved digestibility. In: Drackley JK (ed) Soy in animal nutrition, Federation of Animal Science Societies, Savoy, pp 56–74 Skoneczka JA, Maroof MAS, Shang C, Buss GR (2009) Identification of candidate gene mutation associated with low stachyose phenotype in soybean line PI200508. Crop Sci 49:247 Van den Ende W (2013) Multifunctional fructans and raffinose family oligosaccharides. Front Plant Sci 4:247 Vuong TD, Sleper DA, Shannon JG, Nguyen HT (2010) Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C. Theor Appl Genet 121:1253–1266 Wu X, Ren C, Joshi T, Vuong T, Xu D, Nguyen HT (2010) SNP discovery by high-throughput sequencing in soybean. BMC Genom 11:469 Zhou ML, Zhang Q, Zhou M, Sun ZM, Zhu XM, Shao JR, Tang YX, Wu YM (2012) Genome-wide identification of genes involved in raffinose metabolism in Maize. Glycobiology 22:1775–1785 Zuther E, Buchel K, Hundertmark M, Stitt M, Hincha DK, Heyer AG (2004) The role of raffinose in the cold acclimation response of Arabidopsis thaliana. FEBS Lett 576:169–173