How does frontal age influence physiological status of bacteria: a case study from the Northeastern Arabian Sea

Lidita Khandeparker1, Ranjith Eswaran2, Arga Chandrashekar Anil2
1CSIR – National Institute of Oceanography, Goa, India.
2CSIR-National Institute of Oceanography, Goa, India

Tóm tắt

Từ khóa


Tài liệu tham khảo

Arnosti C (2004) Speed bumps and barricades in the carbon cycle: substrate structural effects on carbon cycling. Mar Chem 92:263–273

Arnous MB, Courcol N, Carrias JF (2010) The significance of transparent exopolymeric particles in the vertical distribution of bacteria and heterotrophic nanoflagellates in Lake Pavin. Aquat sci 72:245–253

Azam F, Fenchel T, Field JG, Gray JS, Meyer-Reil LA, Thingstad F (1983) The ecological role of water-column microbes in the sea. Mar Ecol Prog Ser 10:257–263

Ballen-Segura M, Felip M, Catalan J (2017) Some mixotrophic flagellate species selectively graze on Archaea. Appl Environ Microbiol 83:e02317-e2416

Barman TE (1969) Enzyme handbook, 2nd edn. Springer, New York, p 510

Bar-Zeev E, Rahav E (2015) Microbial metabolism of transparent exopolymer particles during the summer months along a eutrophic estuary system. Front Microbiol 6:403

Beier S, Bertilsson S (2013) Bacterial chitin degradation—mechanisms and ecophysiological strategies. Front Microbiol 4:149

Belkin IM, Cornillon PC, Sherman K (2009) Fronts in large marine ecosystems. Prog Oceanogr 81:223–236

Benner R, Pakulski JD, McCarthy M, Hedges JI, Hatcher PG (1992) Bulk chemical characteristics of dissolved organic matter in the ocean. Science 255:1561–1564

Bhaskar PV, Grossart HP, Bhosle NB, Simon M (2005) Production of macroaggregates from dissolved exopolymeric substances (EPS) of bacterial and diatom origin. FEMS Microbiol Ecol 53:255–264

Biddanda B, Benner R (1997) Carbon, nitrogen, and carbohydrate fluxes during the production of particulate and dissolved organic matter by marine phytoplankton. Limnol Oceanogr 42:506–518

Brown MR (1991) The amino-acid and sugar composition of 16 species of microalgae used in mariculture. J Exp Mar Biol Ecol 145:79–99

Brunner E, Richthammer P, Ehrlich H, Paasch S, Simon P, Ueberlein S, Van Pée KH (2009) Chitin-based organic networks: an integral part of cell wall biosilica in the diatom Thalassiosira pseudonana. Angew Chem Int Ed Engl 48:9724–9727

Busch K, Endres S, Iversen MH, Michels J, Nöthig EM, Engel A (2017) Bacterial colonization and vertical distribution of marine gel particles (TEP and CSP) in the Arctic Fram Strait. Front Mar Sci 4:166

Cauchie HM (2002) Chitin production by arthropods in the hydrosphere. Hydrobiologia 470:63–95

Chitari RR (2019) Studies on ecology of microphytoplankton from the Northern Indian Ocean. Ph.D. thesis, Goa University, Goa, India.

Christaki U, Courties C, Massana R, Catala P, Lebaron P, Gasol JM, Zubkov MV (2011) Optimized routine flow cytometric enumeration of heterotrophic flagellates using SYBR Green I. Limnol Oceanogr Methods 9:329–339

Christian JR, Karl DM (1995) Bacterial ectoenzymes in marine waters: activity ratios and temperature responses in three oceanographic provinces. Limnol Oceanogr 40:1042–1049

Chróst RJ (1989) Characterization and significance of β-glucosidase activity in lake water. Limnol Oceanogr 34:660–672

Chróst RJ (1990) Microbial ectoenzymes in aquatic environments. Aquatic microbial ecology. Springer, New York, pp 47–78

Chróst RJ (1992) Significance of bacterial ectoenzymes in aquatic environments. Hydrobiologia 243:61–70

Chrost RJ (1991) Environmental control of the synthesis and activity of aquatic microbial ectoenzymes. Microbial enzymes in aquatic environments. Springer, New York, pp 29–59

Croot PL, Passow U, Assmy P, Jansen S, Strass VH (2007) Surface active substances in the upper water column during a Southern Ocean Iron Fertilization Experiment (EIFEX). Geophys Res Lett 34:1–5

De La Rocha CL, Nowald N, Passow U (2008) Interactions between diatom aggregates, minerals, particulate organic carbon, and dissolved organic matter: further implications for the ballast hypothesis. Global Biogeochem Cycles 22:1–10

Decho AW (1990) Microbial exopolymer secretions in ocean environments: their role(s) in food webs and marine processes. Oceanogr Mar Biol Annu Rev 28:73–153

Ducklow HW, Carlson CA, Smith WO (1998) Bacterial growth in experimental plankton assemblages and seawater cultures from the Phaeocystis antarctica bloom in the Ross Sea, Antarctica. Aquat Microb Ecol 168:229–244

Durkin CA, Mock T, Armbrust EV (2009) Chitin in diatoms and its association with the cell wall. Eukaryot Cell 8:1038–1050

Dutz J, Breteler WK, Kramer G (2005) Inhibition of copepod feeding by exudates and transparent exopolymer particles (TEP) derived from a Phaeocystis globosa dominated phytoplankton community. Harmful Algae 4:929–940

Engel A (2004) Distribution of transparent exopolymer particles (TEP) in the northeast Atlantic Ocean and their potential significance for aggregation processes. Deep Sea Res Part I Oceanogr Res Pap 51:83–92

Eswaran R, Khandeparker L (2017) Seasonal variation in bacterial community composition and β-glucosidase expression in a tropical monsoon-influenced estuary. Aquat Microb Ecol 80:273–287

Fernández M, Bianchi M, Van Wambeke F (1994) Bacterial biomass, heterotrophic production and utilization of dissolved organic matter photosynthetically produced in the Almeria-Oran front. J Mar Syst 5:313–325

Fiala M, Sournia A, Claustre H, Marty JC, Prieur L, Vétion G (1994) Gradients of phytoplankton abundance, composition and photosynthetic pigments across the Almeria-Oran front (SW Mediterranean Sea). J Mar Syst 5:223–233

Garrison DL, Gowing MM, Hughes MP, Campbell L, Caron DA, Dennett MR, Shalapyonok A, Olson RJ, Landry MR, Brown SL, Liu HB (2000) Microbial food web structure in the Arabian Sea: a US JGOFS study. Deep Sea Res Part II Top Stud Oceanogr 47:1387–1422

Gasol JM, Zweifel UL, Peters F, Fuhrman JA, Hagström Å (1999) Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol 65:4475–4483

Giroldo D, Henriques Vieira AA, Paulsen BS (2003) relative increase of deoxy sugars during microbial degradation of an extracellular polysaccharide released by a tropical freshwater Thalassiosira sp. (Bacillariophyceae). J Phycol 39:1109–1115

Gooday GW (1990) The ecology of chitin degradation. Advances in microbial ecology. Springer, Boston, pp 387–430

Grasshoff K, Ehrhardt M, Kremling K (1983) Methods of seawater analysis, 2nd edn. Verlag Chemie, New York

Grossart HP, Czub G, Simon M (2006) Algae–bacteria interactions and their effects on aggregation and organic matter flux in the sea. Environ Microbiol 8:1074–1084

Gügi B, Le Costaouec T, Burel C, Lerouge P, Helbert W, Bardor M (2015) Diatom-specific oligosaccharide and polysaccharide structures help to unravel biosynthetic capabilities in diatoms. Mar Drugs 13:5993–6018

Hahn MW, Höfle MG (2001) Grazing of protozoa and its effect on populations of aquatic bacteria. FEMS Microbiol Ecol 35:113–121

Harlay J, De Bodt C, Engel A, Jansen S, d’Hoop Q, Piontek J, Van Oostende N, Groom S, Sabbe K, Chou L (2009) Abundance and size distribution of transparent exopolymer particles (TEP) in a coccolithophorid bloom in the northern Bay of Biscay. Deep Sea Res Part I Oceanogr Res Pap 56:1251–1265

Helbert W (2017) Marine polysaccharide sulfatases. Front Mar Sci 4:6

Holloway CF, Cowen JP (1997) Development of a scanning confocal laser microscopic technique to examine the structure and composition of marine snow. Limnol Oceanogr 42:1340–1352

Hoppe HG (1993) Use of fluorogenic model substrates for extracellular enzyme activity (EEA) measurement of bacteria. Handbook of methods in aquatic microbial ecology. CRC Press, Cambridge, pp 423–431

Hoppe HG, Arnosti C, Herndl GJ (2002) Ecological significance of bacterial enzymes in the marine environment. Enzymes in the environment: activity, ecology, and applications. Marcel Decker, New York, pp 73–107

Jackson GA (1995) TEP and coagulation during a mesocosm experiment. Deep Sea Res II 42:215–222

Janse I, Van Rijssel M, Gottschal JC, Lancelot C, Gieskes WW (1996) Carbohydrates in the North Sea during spring blooms of Phaeocystis: a specific fingerprint. Aquat Microb Ecol 10:97–103

Khandeparker L, Eswaran R, Hede N, Anil AC (2018) Significance of metabolically active bacterioplankton in the frontal regions of the Northeastern Arabian Sea. Aquat sci 80:38

Klein C, Claquin P, Pannard A, Napoléon C, Le Roy B, Véron B (2011) Dynamics of soluble extracellular polymeric substances and transparent exopolymer particle pools in coastal ecosystems. Mar Ecol Prog Ser 427:13–27

Krishna MS, Mukherjee J, Dalabehera HB, Sarma VVSS (2018) Particulate organic carbon composition in temperature fronts of the northeastern Arabian Sea during winter. J Geophys Res Biogeosci 123:463–478

Lebaron P, Servais P, Baudoux AC, Bourrain M, Courties C, Parthuisot N (2002) Variations of bacterial-specific activity with cell size and nucleic acid content assessed by flow cytometry. Aquat Microb Ecol 28:131–140

Ling SC, Alldredge AL (2003) Does the marine copepod Calanus pacificus consume transparent exopolymer particles (TEP)? J Plankton Res 25:507–515

Madhupratap M, Prasanna Kumar S, Bhattathiri PMA, Dileep Kumar M, Raghukumar S, Nair KKC, Ramaiah N (1996) Mechanism of the biological response to winter cooling in the northeastern Arabian Sea. Nature 384:549–552

Mari X, Rassoulzadegan F (2004) Role of TEP in the microbial food web structure. I. Grazing behavior of a bacterivorous pelagic ciliate. Mar Ecol Prog Ser 279:13–22

Misic C, Fabiano M (2006) Ectoenzymatic activity and its relationship to chlorophyll-a and bacteria in the Gulf of Genoa (Ligurian Sea, NW Mediterranean). J Mar Syst 60:193–206

Monticelli LS, Caruso G, Decembrini F, Caroppo C, Fiesoletti F (2014) Role of prokaryotic biomasses and activities in carbon and phosphorus cycles at a coastal, thermohaline front and in offshore waters (Gulf of Manfredonia, Southern Adriatic Sea). Microb Ecol 67:501–519

Mopper K, Ramana KS, Drapeau DT (1995) The role of surface-active carbohydrates in the flocculation of a diatom bloom in a mesocosm. Deep Sea Res Part II Top Stud Oceanogr 42:47–73

Myklestad S, Haug A (1972) Production of carbohydrates by the marine diatom Chaetoceros affinis var. willei (Gran) Hustedt. I. Effect of the concentration of nutrients in the culture medium. J Exp Mar Biol Ecol 9:125–136

Nosaka Y, Yamashita Y, Suzuki K (2017) Dynamics and origin of transparent exopolymer particles in the Oyashio Region of the Western Subarctic Pacific during the Spring diatom bloom. Front Mar Sci 4:79

Ortega-Retuerta E, Duarte CM, Reche I (2010) Significance of bacterial activity for the distribution and dynamics of transparent exopolymer particles in the Mediterranean Sea. Microb Ecol 59:808–818

Ortega-Retuerta E, Marrasé C, Muñoz-Fernández A, Sala MM, Simó R, Gasol JM (2018) Seasonal dynamics of transparent exopolymer particles (TEP) and their drivers in the coastal NW Mediterranean Sea. Sci Total Environ 631:180–190

Passow U (2000) Formation of transparent exopolymer particles, TEP, from dissolved precursor material. Mar Ecol Prog Ser 192:1–11

Passow U (2002) Transparent exopolymer particles (TEP) in aquatic environments. Prog Oceanogr 55:287–333

Passow U, Alldredge AL, Logan BE (1994) The role of particulate carbohydrate exudates in the flocculation of diatom blooms. Deep Sea Res Part I Oceanogr Res Pap 41:335–357

Passow U, Shipe RF, Murray A, Pak DK, Brzezinski MA, Alldredge AL (2001) The origin of transparent exopolymer particles (TEP) and their role in the sedimentation of particulate matter. Cont Shelf Res 21:327–346

Pedrotti ML, Peters F, Beauvais S, Vidal M, Egge J, Jacobsen A, Marrasé C (2010) Effects of nutrients and turbulence on the production of transparent exopolymer particles: a mesocosm study. Mar Ecol Prog Ser 419:57–69

Pernthaler J, Sattler B, Simek K, Schwarzenbacher A, Psenner R (1996) Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquat Microb Ecol 10:255–263

Piontek J, Händel N, De Bodt C, Harlay J, Chou L, Engel A (2011) The utilization of polysaccharides by heterotrophic bacterioplankton in the Bay of Biscay (North Atlantic Ocean). J Plankton Res 33:1719–1735

Prieto L, Navarro G, Cozar A, Echevarria F, Garcia CM (2006) Distribution of TEP in the euphotic and upper mesopelagic zones of the southern Iberian coasts. Deep Sea Res Part II Top Stud Oceanogr 53:1314–1328

Pugnetti A, Armeni M, Camatti E, Crevatin E, Dell’Anno A, Del Negro P, Milandri A, Socal G, Umani SF, Danovaro R (2005) Imbalance between phytoplankton production and bacterial carbon demand in relation to mucilage formation in the Northern Adriatic Sea. Sci Total Environ 353:162–177

Ramseier MK, von Gunten U, Freihofer P, Hammes F (2011) Kinetics of membrane damage to high (HNA) and low (LNA) nucleic acid bacterial clusters in drinking water by ozone, chlorine, chlorine dioxide, monochloramine, ferrate (VI), and permanganate. Water Res 45:1490–1500

Rgens KJ, Massana R (2008) Protistan grazing on marine bacterioplankton. Microbial ecology of the oceans. Wiley, Hoboken, p 383

Roy R, Anil AC (2015) Complex interplay of physical forcing and Prochlorococcus population in ocean. Prog Oceanogr 137:250–260

Roy R, Chitari R, Kulkarni V, Krishna MS, Sarma VVSS, Anil AC (2015) CHEMTAX-derived phytoplankton community structure associated with temperature fronts in the northeastern Arabian Sea. J Mar Syst 144:81–91

Samo TJ, Pedler BE, Ball GI, Pasulka AL, Taylor AG, Aluwihare LI, Azam F, Ralf G, Landry MR (2012) Microbial distribution and activity across a water mass frontal zone in the California current ecosystem. J Plankton Res 34:802–814

Sanders RW, Caron DA, Berninger UG (1992) Relationships between bacteria and heterotrophic nanoplankton in marine and fresh waters: an inter-ecosystem comparison. Mar Ecol Prog Ser 86:1–14

Sarma VVSS, Desai DV, Patil JS, Khandeparker L, Aparna SG, Shankar D, D’Souza S, Dalabehera HB, Mukherjee J, Sudharani P, Anil AC (2018) Ecosystem response in temperature fronts in the northeastern Arabian Sea. Prog Oceanogr 165:317–331

Schattenhofer M, Wulf J, Kostadinov I, Glöckner FO, Zubkov MV, Fuchs BM (2011) Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean. Syst Appl Microbiol 34:470–475

Schuster S, Herndl GJ (1995) Formation and significance of transparent exopolymeric particles in the northern Adriatic Sea. Mar Ecol Prog Ser 124:227–236

Šimek K, Kasalický V, Jezbera J, Horňák K, Nedoma J, Hahn MW, Bass D, Jost S, Boenigk J (2013) Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME J 7:1519

Sintes E, del Giorgio PA (2014) Feedbacks between protistan single-cell activity and bacterial physiological structure reinforce the predator/prey link in microbial foodwebs. Front Microbiol 5:453

Smestad B, Haug A, Myklestad S (1975) Structural studies of the extracellular polysaccharide produced by the diatom Chaeotoceros curvisetus cleve. Acta Chem Scand B 29:337–340

Smucker RA, Dawson R (1986) Products of photosynthesis by marine phytoplankton: chitin in TCA “protein” precipitates. J Exp Mar Biol Ecol 104:143–152

Somville M (1984) Measurement and study of substrate specificity of exoglucosidase activity in eutrophic water. Appl Environ Microbiol 48:1181–1185

Størseth TR, Kirkvold S, Skjermo J, Reitan KI (2006) A branched β-d-(1→ 3, 1→ 6)-glucan from the marine diatom Chaetoceros debilis (Bacillariophyceae) characterized by NMR. Carbohydr Res 341:2108–2114

Tang KW, Turk V, Grossart HP (2010) Linkage between crustacean zooplankton and aquatic bacteria. Aquat Microb Ecol 61:261–277

ter Braak CJ, Smilauer P (2002) CANOCO reference manual and CanoDraw for Windows user's guide: software for canonical community ordination (version 4.5). https://www.canoco.com.

Thornton DC (2004) Formation of transparent exopolymeric particles (TEP) from macroalgal detritus. Mar Ecol Prog Ser 282:1–12

Vipin P, Sarkar K, Aparna SG, Shankar D, Sarma VVSS, Gracias DG, Krishna MS, Srikanth G, Mandal R, Rao ER, Rao NS (2015) Evolution and sub-surface characteristics of a sea-surface temperature filament and front in the northeastern Arabian Sea during November–December 2012. J Mar Syst 150:1–11

Wang Y, Hammes F, Boon N, Chami M, Egli T (2009) Isolation and characterization of low nucleic acid (LNA)-content bacteria. ISME J 3:889–902

Woodson CB, Litvin SY (2015) Ocean fronts drive marine fishery production and biogeochemical cycling. PNAS 112:1710–1715