Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef

Molecular Ecology - Tập 20 Số 23 - Trang 4899-4914 - 2011
Madeleine J. H. van Oppen1, Lesa M. Peplow1, Stuart Kininmonth1, Ray Berkelmans1
1Australian Institute of Marine Science, PMB No. 3, Townsville MC, QL 4810, Australia.

Tóm tắt

Từ khóa


Tài liệu tham khảo

Allendorf, 2006, Conservation and the Genetics of Populations

Almany, 2009, Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs, Coral Reefs, 28, 339, 10.1007/s00338-009-0484-x

Ayre, 2004, Climate change, genotypic diversity and gene flow in reef-building corals, Ecoly Letters, 7, 273, 10.1111/j.1461-0248.2004.00585.x

Babcock, 1986, Larval development of certain gamete-spawning scleractinian corals, Coral Reefs, 5, 111, 10.1007/BF00298178

Bastidas, 2001, Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef, Marine Biology, 138, 517, 10.1007/s002270000480

Bastidas, 2002, Genetic differentiation among populations of the brooding soft coral Clavularia koellikeri on the Great Barrier Reef, Coral Reefs, 21, 233, 10.1007/s00338-002-0236-7

Baums, 2005, Regionally isolated populations of an imperiled Caribbean coral, Acropora palmata, Molecular Ecology, 14, 1377, 10.1111/j.1365-294X.2005.02489.x

Bay, 2008, Meta-population structure in a coral reef fish demonstrated by genetic data on patterns of migration, extinction and re-colonisation, BMC Evolutionary Biology, 8, 248, 10.1186/1471-2148-8-248

Bellwood, 2001, Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef, Coral Reefs, 20, 139, 10.1007/s003380100156

Benzie, 1994, Genetics and Evolution of Aquatic Organism, 67

Bergenius, 2006, The use of otolith morphology to indicate the stock structure of common coral trout (Plectropomus leopardus) on the Great Barrier Reef, Australia, Fishery Bulletin, 104, 498

Berkelmans, 2004, A comparison of the 1998 and 2002 coral bleaching events on the Great Barrier Reef: spatial correlation, patterns, and predictions, Coral Reefs, 23, 74, 10.1007/s00338-003-0353-y

Best, 1987, Acrive settlement of coral planulae-the effect of flow and swimming behavior on local recruitment, American Zoologist, 27, A103

Betzler, 1995, Role of climate in partial drowning of the Queensland Plateau carbonate platform (northeastern Australia), Marine Geology, 123, 11, 10.1016/0025-3227(95)80002-S

Bierne, 2011, The coupling hypothesis: why genome scans may fail to map local adaptation genes, Molecular Ecology, 20, 2044, 10.1111/j.1365-294X.2011.05080.x

Brinkman, 2002, Oceanic inflow from the Coral Sea into the Great Barrier Reef, Estuarine Coastal and Shelf Science, 54, 655, 10.1006/ecss.2001.0850

Burnett, 1995, Patterns of genetic subdivision in populations of a clonal cnidarian, Zoanthus coppingeri, from the Great Barrier Reef, Marine Biology, 122, 665, 10.1007/BF00350688

Burrage, 1993, Coral Sea currents, Corella, 17, 135

Burrage, 1996, Mesoscale circulation features of the Great Barrier Reef region inferred from NOAA satellite imagery, Remote Sensing of Environment, 56, 21, 10.1016/0034-4257(95)00226-X

Carlon, 1993, Larval dispersal distance as an explanation for adult spatial pattern in two Caribbean reef corals, Journal of Experimental Marine Biology and Ecology, 173, 247, 10.1016/0022-0981(93)90056-T

Carter, 1986, Sea-level controls on the postglacial development of the Great-Barrier-Reef, Queensland, Marine Geology, 71, 137, 10.1016/0025-3227(86)90036-8

Chapuis, 2007, Microsatellite null alleles and estimation of population differentiation, Molecular Biology Evolution, 24, 621, 10.1093/molbev/msl191

Choukroun, 2010, On the surface circulation in the western Coral Sea and residence times in the Great Barrier Reef, Journal of Geophysical Research-Oceans, 115, C06013, 10.1029/2009JC005761

Cornuet, 1996, Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data, Genetics, 144, 2001, 10.1093/genetics/144.4.2001

Cowen, 2007, Population connectivity in marine systems: an overview, Oceanography, 20, 14, 10.5670/oceanog.2007.26

Crawford, 2010, SMOGD: software for the measurement of genetic diversity, Molecular Ecology Resources, 10, 556, 10.1111/j.1755-0998.2009.02801.x

Csardi, 2006, The igraph software package for complex network research, Inter Journal Complex Systems

Davies, 1994, Evolution of the Great Barrier Reef, Australian Geologist, 92, 21

Diaz-Pulido, 2009, Doom and boom on a resilient reef: climate change, algal overgrowth and coral recovery, PLoS ONE, 4, e5239, 10.1371/journal.pone.0005239

Dight, 1990, Modelling the larval dispersal of Acanthaster-planci.1. Large-scale hydrodynamics, Cairns section, Great-Barrier-Reef marine park, Coral Reefs, 9, 115, 10.1007/BF00258222

Doherty, 1995, Gene flow and larval duration in seven species of fish from the Great Barrier Reef, Ecology, 76, 2373, 10.2307/2265814

Done, 1982, Patterns in the distribution of coral communities across the central Great Barrier Reef, Coral Reefs, 1, 95, 10.1007/BF00301691

Dorogovtsev, 2010, Lectures on Complex Networks, 10.1093/acprof:oso/9780199548927.001.0001

Earl, 2009, Structure Harvester v 0.56.3

Evanno, 2005, Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study, Molecular Ecology, 14, 2611, 10.1111/j.1365-294X.2005.02553.x

Evans, 2010, Strong genetic but not spatial subdivision of two reef fish species targeted by fishers on the Great Barrier Reef, Fisheries Research, 102, 16, 10.1016/j.fishres.2009.10.002

Excoffier, 1992, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, Genetics, 131, 479, 10.1093/genetics/131.2.479

Farnsworth, 2010, Genetic structure across the GBR: evidence from short-lived gobies, Marine Biology, 157, 945, 10.1007/s00227-009-1375-y

Fernandes, 2005, Establishing representative no-take areas in the Great Barrier Reef: large-scale implementation of theory on marine protected areas, Conservation Biology, 19, 1733, 10.1111/j.1523-1739.2005.00302.x

Fisk, 1985, Proceedings of the Fifth International Coral Reef Symposium, 149

Freeman, 1978, Centrality in social networks: conceptual clarification, Social Networks, 1, 215, 10.1016/0378-8733(78)90021-7

Gerlach, 2007, Smelling home can prevent dispersal of reef fish larvae, Proceedings of the National Academy of Science USA, 104, 858, 10.1073/pnas.0606777104

Goudet, 1995, Fstat version 1.2: a computer program to calculate Fstatistics, Journal of Heredity, 86, 485, 10.1093/oxfordjournals.jhered.a111627

Graham, 2008, Survival dynamics of scleractinian coral larvae and implications for dispersal, Coral Reefs, 27, 529, 10.1007/s00338-008-0361-z

Green AL Lokani P Sheppard S et al. 2007 Scientific design of a resilient network of marine protected areas: Kimbe Bay, West New Britain, Papua New Guinea, TNC Pacific Island Countries

Hedrick, 2005, A standardized genetic differentiation measure, Evolution, 59, 1633, 10.1111/j.0014-3820.2005.tb01814.x

van Herwerden, 2006, Contrasting genetic structures across two hybrid zones of a tropical reef fish, Acanthochromis polyacanthus (Bleeker 1855), Journal of Evolutionary Biology, 19, 239, 10.1111/j.1420-9101.2005.00969.x

Heyward, 1999, Natural inducers for coral larval metamorphosis, Coral Reefs, 18, 273, 10.1007/s003380050193

Hogan, 2010, Variability in connectivity indicated by chaotic genetic patchiness within and among populations of a marine fish, Marine Ecology-Progress Series, 417, 263, 10.3354/meps08793

Hopley, 1983, Australian Sea Levels in the last 15000 years: A Review, 3

Howells, 2009, High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium, Coral Reefs, 28, 215, 10.1007/s00338-008-0450-z

Jones, 2008, A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization, Proceedings of the Royal Society B-Biological Sciences, 275, 1359, 10.1098/rspb.2008.0069

Jones, 2009, Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges, Coral Reefs, 28, 307, 10.1007/s00338-009-0469-9

Jost, 2008, G(ST) and its relatives do not measure differentiation, Molecular Ecology, 17, 4015, 10.1111/j.1365-294X.2008.03887.x

Kininmonth, 2010, Determining the community structure of the coral Seriatopora hystrix from hydrodynamic and genetic networks, Ecological Modeling, 221, 2870, 10.1016/j.ecolmodel.2010.08.042

Kleypas, 1994, Satellite-observations of circulation in the southern Great-Barrier-Reef, Australia, International Journal of Remote Sensing, 15, 2051, 10.1080/01431169408954227

Kortschak, 2003, EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates, Current Biology, 13, 2190, 10.1016/j.cub.2003.11.030

Luick, 2007, Circulation in the Great Barrier Reef Lagoon using numerical tracers and in situ data, Continental Shelf Research, 27, 757, 10.1016/j.csr.2006.11.020

Luikart, 1998, Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change, Molecular Ecology, 7, 963, 10.1046/j.1365-294x.1998.00414.x

Lukoschek, 2007, Phylogeography of the olive sea snake, Aipysurus laevis (Hydrophiinae) indicates Pleistocene range expansion around northern Australia but low contemporary gene flow, Molecular Ecology, 16, 3406, 10.1111/j.1365-294X.2007.03392.x

Macaranas, 1992, Genetic structure of giant clam (Tridacna derasa) populations from reefs in the Indo-Pacific, Marine Biology, 113, 231, 10.1007/BF00347276

Marshall, 2000, Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa, Coral Reefs, 19, 155, 10.1007/s003380000086

Marshall, 2010, Phenotype-environment mismatches reduce connectivity in the sea, Ecology Letters, 13, 128, 10.1111/j.1461-0248.2009.01408.x

Meirmans, 2006, Using the AMOVA framework to estimate a standardized genetic differentiation measure, Evolution, 60, 2399, 10.1554/05-631.1

Meirmans, 2004, GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms, Molecular Ecology Notes, 4, 792, 10.1111/j.1471-8286.2004.00770.x

Miller, 2003, Rapid settlement in broadcast spawning corals: implications for larval dispersal, Coral Reefs, 22, 99, 10.1007/s00338-003-0290-9

Mumby, 2011, Reserve design for uncertain responses of coral reefs to climate change, Ecology Letters, 14, 132, 10.1111/j.1461-0248.2010.01562.x

Narum, 2006, Beyond Bonferroni: less conservative analyses for conservation genetics, Conservation Genetics, 7, 783, 10.1007/s10592-005-9056-y

Newman, 2006, Modularity and community structure in networks, Proceedings of the National Academy of Science USA, 103, 8577, 10.1073/pnas.0601602103

Nishikawa, 2003, Larval settlement rates and gene flow of broadcast- spawning (Acropora tenuis) and planula-brooding (Stylophora pistillata) corals, Marine Ecology-Progress Series, 256, 87, 10.3354/meps256087

Oliver, 1987, Coral-spawn slicks in the Great-Barrier-Reef-preliminary observations, Marine Biologu, 94, 521, 10.1007/BF00431398

van Oppen, 2007, Ten microsatellite loci for the reef-building coral Acropora millepora (Cnidaria, Scleractinia) from the Great Barrier Reef, Australia, Molecular Ecology Notes, 7, 436, 10.1111/j.1471-8286.2006.01610.x

van Oppen, 2008, Genetic traces of recent long-distance dispersal in a predominantly self-recruiting Coral, PLoS One, 3, e3401, 10.1371/journal.pone.0003401

Peakall, 2006, GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research, Molecular Ecology Notes, 6, 288, 10.1111/j.1471-8286.2005.01155.x

Preston, 1994, Cross-shelf patterns in the community structure of coral-dwelling crustacea in the central region of the Great-Barrier-Reef .2. Cryptofauna, Marine Ecology-Progress Series, 104, 27, 10.3354/meps104027

Pritchard, 2000, Inference of population structure using multilocus genotype data, Genetics, 155, 945, 10.1093/genetics/155.2.945

Raymond, 1995, GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism, Journal of Heredity, 86, 248, 10.1093/oxfordjournals.jhered.a111573

Russ, 1984, Distribution and abundance of herbivorous grazing fishes in the central Great-Barrier-Reef .1. Levels of variability across the entire continental-shelf, Marine Ecology-Progress Series, 20, 23, 10.3354/meps020023

Serrano, 2009, Extracting the multiscale backbone of complex weighted networks, Proceedings of the National Academy of Science USA, 106, 6483, 10.1073/pnas.0808904106

Smith, 1999, An experimental assessment of survival, re-attachment and fecundity of coral fragments, Journal of Experimental Marine Biology and Ecology, 235, 147, 10.1016/S0022-0981(98)00178-6

Smith-Keune, 2006, Genetic structure of a reef-building coral from thermally distinct environments on the Great Barrier Reef, Coral Reefs, 25, 493, 10.1007/s00338-006-0129-2

Souter, 2010, Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef, Marine Ecology-Progress Series, 416, 35, 10.3354/meps08740

Steinberg, 2007, Climate Change and the Great Barrier Reef: A Vulnerability Assessment, 52

Sweatman, 2011, Assessing loss of coral cover on Australia’s Great Barrier Reef over two decades, with implications for longer-term trends, Coral Reefs, 2, 521, 10.1007/s00338-010-0715-1

Treml, 2008, Modeling population connectivity by ocean currents, a graph-theoretic approach for marine conservation, Landscape Ecology, 23, 19, 10.1007/s10980-007-9138-y

Uthicke, 2001, Restricted gene flow between Holothuria scabra (Echinodermata: Holothuroidea) populations along the north-east coast of Australia and the Solomon Islands, Marine Ecology-Progress Series, 216, 109, 10.3354/meps216109

Uthicke, 1999, Population genetics of the fissiparous holothurian Stichopus chloronotus (Aspidochirotida) on the Great Barrier Reef, Australia, Coral Reefs, 18, 123, 10.1007/s003380050166

VanWoesik, 1995, Effects of cyclone ‘Joy’ on nearshore coral communities of the Great Barrier Reef, Marine Ecology-Progress Series, 128, 261, 10.3354/meps128261

Veron, 1995, Corals in Space and Time

Wachenfeld, 2007, Climate Change and the Great Barrier Reef: A Vulnerability Assessment, 1

Waits, 2001, Estimating the probability of identity among genotypes in natural populations: cautions and guidelines, Molecular Ecology, 10, 249, 10.1046/j.1365-294X.2001.01185.x

Wallace, 1999, Staghorn Corals of the World: A Revision of the Genus Acropora, 10.1071/9780643101388

Wang, 2009, Microsatellite characterization and marker development from public EST and WGS databases in the reef-building coral Acropora millepora (Cnidaria, Anthozoa, Scleractinia), Journal of Heredity, 100, 329, 10.1093/jhered/esn100

Weeks, 2010, The Capricorn Eddy: a prominent driver of the ecology and future of the southern Great Barrier Reef, Coral Reefs, 29, 975, 10.1007/s00338-010-0644-z

Williams, 1993, Genetic consequences of long larval life in the starfish Linckia-laevigata (Echonidermata, Ateroidea) on the Great Barrier Reef, Marine Biology, 117, 71, 10.1007/BF00346427

Willis, 1990, Direct tracking of coral larvae-Implications for dispersal studies of planktonic larvae in topographically complex environments, Ophelia, 32, 145, 10.1080/00785236.1990.10422029

Wilson, 2002, Genetic mapping of the black tiger shrimp Penaeus monodon with amplified fragment length polymorphism, Aquaculture, 204, 297, 10.1016/S0044-8486(01)00842-0

Wismer, 2009, Cross-shelf benthic community structure on the Great Barrier Reef: relationships between macroalgal cover and herbivore biomass, Marine Ecology-Progress Series, 376, 45, 10.3354/meps07790

Wörheide, 2002, Phylogeography of western Pacific Leucetta ‘chagosensis’ (Porifera: Calcarea) from ribosomal DNA sequences: implications for population history and conservation of the Great Barrier Reef World Heritage Area (Australia), Molecular Ecology, 11, 1753, 10.1046/j.1365-294X.2002.01570.x

Yasuda, 2009, Gene flow of Acanthaster planci (L.) in relation to ocean currents revealed by microsatellite analysis, Molecular Ecology, 18, 1574, 10.1111/j.1365-294X.2009.04133.x

Zvuloni, 2008, Local scale genetic structure in coral populations: a signature of selection, Marine Pollution Bulletin, 56, 430, 10.1016/j.marpolbul.2007.11.002