Genome-wide analysis of Fis binding in <i>Escherichia coli</i> indicates a causative role for A-/AT-tracts
Tóm tắt
Từ khóa
Tài liệu tham khảo
Augustin,, 1994, Escherichia coli Fis and DnaA proteins bind specifically to the nrd promoter region and affect expression of an nrd-lac fusion, J. Bacteriol., 176, 378, 10.1128/jb.176.2.378-387.1994
Azam,, 1999, Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid, J. Bacteriol., 181, 6361, 10.1128/JB.181.20.6361-6370.1999
Bailey,, 1994, Fitting a mixture model by expectation maximization to discover motifs in biopolymers, Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28
Ball,, 1992, Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli, J. Bacteriol., 174, 8043, 10.1128/jb.174.24.8043-8056.1992
Benjamini,, 1995, Controlling the false discovery rate: A practical and powerful approach to multiple testing, J. R. Stat. Soc. [Ser. B], 57, 289
Betermier,, 1994, Interaction of Fis protein with DNA: Bending and specificity of binding, Biochimie, 76, 958, 10.1016/0300-9084(94)90021-3
Lazarus,, 1993, The Escherichia coliFIS protein is not required for the activation of tyrT transcription on entry into exponential growth, EMBO J., 12, 2483, 10.1002/j.1460-2075.1993.tb05903.x
Muskhelishvili,, 1995, FIS and RNA polymerase holoenzyme form a specific nucleoprotein complex at a stable RNA promoter, EMBO J., 14, 1446, 10.1002/j.1460-2075.1995.tb07131.x
Ninnemann,, 1992, The E. coli fis promoter is subject to stringent control and autoregulation, EMBO J., 11, 1075, 10.1002/j.1460-2075.1992.tb05146.x
Park,, 1997, Aerobic regulation of the sucABCD genes of Escherichia coli, which encode alpha-ketoglutarate dehydrogenase and succinyl coenzyme A synthetase: Roles of ArcA, Fnr, and the upstream sdhCDAB promoter, J. Bacteriol., 179, 4138, 10.1128/jb.179.13.4138-4142.1997
Perkins-Balding,, 1997, Location, degree, and direction of DNA bending associated with the Hin recombinational enhancer sequence and Fis-enhancer complex, J. Bacteriol., 179, 4747, 10.1128/jb.179.15.4747-4753.1997
Robinow,, 1994, The bacterial nucleoid revisited, Microbiol. Rev., 58, 211, 10.1128/mr.58.2.211-232.1994
ten Heggeler-Bordier,, 1992, The apical localization of transcribing RNA polymerases on supercoiled DNA prevents their rotation around the template, EMBO J., 11, 667, 10.1002/j.1460-2075.1992.tb05098.x
Xu,, 1995, aldB, an RpoS-dependent gene in Escherichia coli encoding an aldehyde dehydrogenase that is repressed by Fis and activated by Crp, J. Bacteriol., 177, 3166, 10.1128/jb.177.11.3166-3175.1995