GC-Rich Sequence Elements Recruit PRC2 in Mammalian ES Cells
Tóm tắt
Từ khóa
Tài liệu tham khảo
B Schuettengruber, 2009, Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos., PLoS Biol, 7, e1000013, 10.1371/journal.pbio.1000013
YB Schwartz, 2007, Polycomb silencing mechanisms and the management of genomic programmes., Nat Rev Genet, 8, 9, 10.1038/nrg1981
LA Boyer, 2006, Polycomb complexes repress developmental regulators in murine embryonic stem cells., Nature, 441, 349, 10.1038/nature04733
TI Lee, 2006, Control of developmental regulators by Polycomb in human embryonic stem cells., Cell, 125, 301, 10.1016/j.cell.2006.02.043
M Ku, 2008, Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains., PLoS Genet, 4, e1000242, 10.1371/journal.pgen.1000242
V Azuara, 2006, Chromatin signatures of pluripotent cell lines., Nat Cell Biol, 8, 532, 10.1038/ncb1403
B Bernstein, 2006, A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells., Cell, 125, 315, 10.1016/j.cell.2006.02.041
R Cao, 2002, Role of histone H3 lysine 27 methylation in Polycomb-group silencing., Science, 298, 1039, 10.1126/science.1076997
B Czermin, 2002, Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites., Cell, 111, 185, 10.1016/S0092-8674(02)00975-3
A Kuzmichev, 2002, Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein., Genes Dev, 16, 2893, 10.1101/gad.1035902
KH Hansen, 2008, A model for transmission of the H3K27me3 epigenetic mark., Nat Cell Biol, 10, 1291, 10.1038/ncb1787
R Margueron, 2009, Role of the polycomb protein EED in the propagation of repressive histone marks., Nature, 461, 762, 10.1038/nature08398
L Ringrose, 2007, Polycomb/Trithorax response elements and epigenetic memory of cell identity., Development, 134, 223, 10.1242/dev.02723
J Simon, 1993, Elements of the Drosophila bithorax complex that mediate repression by Polycomb group products., Dev Biol, 158, 131, 10.1006/dbio.1993.1174
J Dejardin, 2005, Recruitment of Drosophila Polycomb group proteins to chromatin by DSP1., Nature, 434, 533, 10.1038/nature03386
B Tolhuis, 2006, Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster., Nat Genet, 38, 694, 10.1038/ng1792
L Wang, 2004, Hierarchical recruitment of polycomb group silencing complexes., Mol Cell, 14, 637, 10.1016/j.molcel.2004.05.009
YB Schwartz, 2006, Genome-wide analysis of Polycomb targets in Drosophila melanogaster., Nat Genet, 38, 700, 10.1038/ng1817
N Negre, 2006, Chromosomal distribution of PcG proteins during Drosophila development., PLoS Biol, 4, e170, 10.1371/journal.pbio.0040170
L Atchison, 2003, Transcription factor YY1 functions as a PcG protein in vivo., Embo J, 22, 1347, 10.1093/emboj/cdg124
CY Ko, 2008, Epigenetic silencing of CCAAT/enhancer-binding protein delta activity by YY1/polycomb group/DNA methyltransferase complex., J Biol Chem, 283, 30919, 10.1074/jbc.M804029200
R Yue, 2009, Beta-arrestin1 regulates zebrafish hematopoiesis through binding to YY1 and relieving polycomb group repression., Cell, 139, 535, 10.1016/j.cell.2009.08.038
H Liu, 2007, Yin Yang 1 is a critical regulator of B-cell development., Genes Dev, 21, 1179, 10.1101/gad.1529307
H Xi, 2007, Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1., Genome Res, 17, 798, 10.1101/gr.5754707
JD Kim, 2009, YY1's role in DNA methylation of Peg3 and Xist., Nucleic Acids Res, 37, 5656, 10.1093/nar/gkp613
A Sing, 2009, A vertebrate Polycomb response element governs segmentation of the posterior hindbrain., Cell, 138, 885, 10.1016/j.cell.2009.08.020
CJ Woo, A region of the human HOXD cluster that confers polycomb-group responsiveness., Cell, 140, 99
AP Bracken, 2006, Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions., Genes Dev, 20, 1123, 10.1101/gad.381706
F Mohn, 2008, Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors., Mol Cell, 30, 755, 10.1016/j.molcel.2008.05.007
A Tanay, 2007, Hyperconserved CpG domains underlie Polycomb-binding sites., Proc Natl Acad Sci U S A, 104, 5521, 10.1073/pnas.0609746104
D Pasini, JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells., Nature, 464, 306, 10.1038/nature08788
G Li, Jarid2 and PRC2, partners in regulating gene expression., Genes Dev, 24, 368, 10.1101/gad.1886410
JC Peng, 2009, Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells., Cell, 139, 1290, 10.1016/j.cell.2009.12.002
X Shen, 2009, Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells., Cell, 139, 1303, 10.1016/j.cell.2009.12.003
TG Kim, 2003, JUMONJI, a critical factor for cardiac development, functions as a transcriptional repressor., J Biol Chem, 278, 42247, 10.1074/jbc.M307386200
SG Tevosian, 2002, Gonadal differentiation, sex determination and normal Sry expression in mice require direct interaction between transcription partners GATA4 and FOG2., Development, 129, 4627, 10.1242/dev.129.19.4627
L Conti, 2005, Niche-independent symmetrical self-renewal of a mammalian tissue stem cell., PLoS Biol, 3, e283, 10.1371/journal.pbio.0030283
TS Mikkelsen, 2007, Genome-wide maps of chromatin state in pluripotent and lineage-committed cells., Nature, 448, 553, 10.1038/nature06008
S Poux, 2001, Recruitment of components of Polycomb Group chromatin complexes in Drosophila., Development, 128, 75, 10.1242/dev.128.1.75
S Schmitt, 2005, Intergenic transcription through a polycomb group response element counteracts silencing., Genes Dev, 19, 697, 10.1101/gad.326205
VR Ramirez-Carrozzi, 2009, A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling., Cell, 138, 114, 10.1016/j.cell.2009.04.020
H Kim, 2009, AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2., Nucleic Acids Res, 37, 2940, 10.1093/nar/gkp149
MP Creyghton, 2008, H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment., Cell, 135, 649, 10.1016/j.cell.2008.09.056
AD Goldberg, Distinct factors control histone variant H3.3 localization at specific genomic regions., Cell, 140, 678, 10.1016/j.cell.2010.01.003
CM Tate, 2009, CXXC Finger Protein 1 Contains Redundant Functional Domains That Support Embryonic Stem Cell Cytosine Methylation, Histone Methylation, and Differentiation., Mol Cell Biol
J Zhao, 2008, Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome., Science, 322, 750, 10.1126/science.1163045
A Kanhere, Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2., Mol Cell, 38, 675, 10.1016/j.molcel.2010.03.019
JL Rinn, 2007, Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs., Cell, 129, 1311, 10.1016/j.cell.2007.05.022
MC Tsai, Long noncoding RNA as modular scaffold of histone modification complexes., Science, 329, 689, 10.1126/science.1192002
M Lorente, 2006, Homeotic transformations of the axial skeleton of YY1 mutant mice and genetic interaction with the Polycomb group gene Ring1/Ring1A., Mech Dev, 123, 312, 10.1016/j.mod.2006.02.003
E Garcia, 1999, RYBP, a new repressor protein that interacts with components of the mammalian Polycomb complex, and with the transcription factor YY1., Embo J, 18, 3404, 10.1093/emboj/18.12.3404
SM Pollard, 2006, Neural stem cells, neurons, and glia., Methods Enzymol, 418, 151, 10.1016/S0076-6879(06)18010-6
RE Mrak, 2004, Atypical extraventricular neurocytoma with oligodendroglioma-like spread and an unusual pattern of chromosome 1p and 19q loss., Hum Pathol, 35, 1156, 10.1016/j.humpath.2004.05.005
A Meissner, 2008, Genome-scale DNA methylation maps of pluripotent and differentiated cells., Nature, 454, 766, 10.1038/nature07107
TL Bailey, 1998, Combining evidence using p-values: application to sequence homology searches., Bioinformatics, 14, 48, 10.1093/bioinformatics/14.1.48