FishPathogens.eu/vhsv: a user‐friendly viral haemorrhagic septicaemia virus isolate and sequence database

Journal of Fish Diseases - Tập 32 Số 11 - Trang 925-929 - 2009
Søren Peter Jonstrup1, Tanya Gray2, Søren Kahns3, Helle Frank Skall3, M Snow4, Niels Jørgen Olesen3
1Division of Poultry, Fish and Fur Animals, National Veterinary Institute, Technical University of Denmark, Arhus N, Denmark.
2Symantix Ltd, Wiltshire, UK
3Community Reference Laboratory for Fish Diseases, Section for Fish Diseases, Division of Poultry, Fish and Fur Animals, National Veterinary Institute, Technical University of Denmark, Århus N, Denmark
4Fisheries Research Services (FRS) Marine Laboratory, Aberdeen, UK.

Tóm tắt

AbstractA database has been created, http://www.FishPathogens.eu, with the aim of providing a single repository for collating important information on significant pathogens of aquaculture, relevant to their control and management. This database will be developed, maintained and managed as part of the European Community Reference Laboratory for Fish Diseases function. This concept has been initially developed for viral haemorrhagic septicaemia virus and will be extended in future to include information on other significant aquaculture pathogens. Information included for each isolate comprises sequence, geographical origin, host origin and useful key literature. Various search mechanisms make it easy to find specific groups of isolates. Search results can be presented in several different ways including table‐based, map‐based and graph‐based outputs. When retrieving sequences, the user is given freedom to obtain data from any selected part of the genome of interest. The output of the sequence search can be readily retrieved as a FASTA file ready to be imported into a sequence alignment tool of choice, facilitating further molecular epidemiological study.

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Thông tin xuất bản

Journal of Fish Diseases

Tập 32 Số 11

925-929

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