Establishment and validation of a loop-mediated isothermal amplification (LAMP) assay targeting the ttrRSBCA locus for rapid detection of Salmonella spp. in food

Abdulmawjood, 2014, Development of loop-mediated isothermal amplification (LAMP) assay for rapid and sensitive identification of ostrich meat, PloS One, 9, 10.1371/journal.pone.0100717 Acheson, 2001, Nontyphoidal salmonellosis, Clinical Infectious Diseases, 32, 263, 10.1086/318457 Anonymous, 2007, L 00.00-98:2007-04: Untersuchung von Lebensmitteln - Qualitativer Nachweis von Salmonellen in Lebensmitteln - Real-time PCR-Verfahren Anonymous, 2017 Anonymous, 2017 Arunrut, 2018, Development and evaluation of real-time loop mediated isothermal amplification assay for rapid and sensitive detection of Salmonella spp. in chicken meat products, Journal of Food Safety, 38, 10.1111/jfs.12564 Bastin, 2019, Confirmation and identification of Salmonella spp., Cronobacter spp., and other gram-negative organisms by the bruker MALDI biotyper method: Collaborative study, first action 2017.09, Journal of AOAC International, 101, 1593, 10.5740/jaoacint.18-0012 Boyd, 1999, Analysis of the type 1 pilin gene cluster fim in Salmonella: Its distinct evolutionary histories in the 5′ and 3′ regions, Journal of Bacteriology, 181, 1301, 10.1128/JB.181.4.1301-1308.1999 Daş, 2006, Effect of controlled atmosphere storage, modified atmosphere packaging and gaseous ozone treatment on the survival of Salmonella Enteritidis on cherry tomatoes, Food Microbiology, 23, 430, 10.1016/j.fm.2005.08.002 De Medici, 2003, Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype Enteritidis in poultry, Applied and Environmental Microbiology, 69, 3456, 10.1128/AEM.69.6.3456-3461.2003 Djordjević, 2018, Survival of Salmonella spp. in minced meat packaged under vacuum and modified atmosphere, Brazilian Journal of Microbiology, 49, 607, 10.1016/j.bjm.2017.09.009 Dmitric, 2018, In-house validation of real-time PCR methods for detecting the INV A and TTR genes of Salmonella spp. in food, Journal of Food Processing and Preservation, 42, e13455, 10.1111/jfpp.13455 Dominguez, 2009, Survival of Salmonella in processed chicken products during frozen storage, Journal of Food Protection, 72, 2088, 10.4315/0362-028X-72.10.2088 2019, The European Union One Health 2018 Zoonoses Report, EFSA Journal, 17, 276 Farber, 1991, Microbiological aspects of modified-atmosphere packaging technology-a review, Journal of Food Protection, 54, 58, 10.4315/0362-028X-54.1.58 Farthing, 2013, Acute diarrhea in adults and children: A global perspective, Journal of Clinical Gastroenterology, 47, 12, 10.1097/MCG.0b013e31826df662 Feldsine, 2002, AOAC International methods committee guidelines for validation of qualitative and quantitative food microbiological official methods of analysis, Journal of AOAC International, 85, 1187, 10.1093/jaoac/85.5.1187 Forsman, 2005, Development of broadly targeted human endogenous gammaretroviral pol-based real time PCRs: Quantitation of RNA expression in human tissues, Journal of Virological Methods, 129, 16, 10.1016/j.jviromet.2005.04.016 Francois, 2011, Robustness of a loop-mediated isothermal amplification reaction for diagnostic applications, FEMS Immunology and Medical Microbiology, 62, 41, 10.1111/j.1574-695X.2011.00785.x Galán, 1992, Molecular and functional characterization of the Salmonella invasion gene invA: Homology of InvA to members of a new protein family, Journal of Bacteriology, 174, 4338, 10.1128/jb.174.13.4338-4349.1992 Ginocchio, 1997, Naturally occurring deletions in the centisome 63 pathogenicity island of environmental isolates of Salmonella spp, Infection and Immunity, 65, 1267, 10.1128/iai.65.4.1267-1272.1997 Hartung, 2019 Hensel, 1999, The genetic basis of tetrathionate respiration in Salmonella typhimurium, Molecular Microbiology, 32, 275, 10.1046/j.1365-2958.1999.01345.x Krämer, 2011, A novel strategy to obtain quantitative data for modelling: Combined enrichment and real-time PCR for enumeration of salmonellae from pig carcasses, International Journal of Food Microbiology, 145, S86, 10.1016/j.ijfoodmicro.2010.08.026 Kreitlow, 2020, Evaluation of different target genes for the detection of Salmonella sp. by loop‐mediated isothermal amplification, Letters in Applied Microbiology Law, 2015, Rapid methods for the detection of foodborne bacterial pathogens: Principles, applications, advantages and limitations, Frontiers in Microbiology, 5, 770, 10.3389/fmicb.2014.00770 Li, 2016, A novel visual loop-mediated isothermal amplification assay targeting gene 62181533 for the detection of Salmonella spp. in foods, Food Control, 60, 230, 10.1016/j.foodcont.2015.07.036 Li, 2009, A loop-mediated isothermal amplification method targets the phoP gene for the detection of Salmonella in food samples, International Journal of Food Microbiology, 133, 252, 10.1016/j.ijfoodmicro.2009.05.027 Mackey, 1982, The effect of sublethal injury by heating, freezing, drying and gamma‐radiation on the duration of the lag phase of Salmonella typhimurium, Journal of Applied Bacteriology, 53, 243, 10.1111/j.1365-2672.1982.tb04683.x Mackey, 1984, Conductance measurements of the lag phase of injured Salmonella typhimurium, Journal of Applied Bacteriology, 57, 299, 10.1111/j.1365-2672.1984.tb01394.x Majowicz, 2010, The global burden of nontyphoidal Salmonella gastroenteritis, Clinical Infectious Diseases, 50, 882, 10.1086/650733 Malorny, 2004, Diagnostic real-time PCR for detection of Salmonella in food, Applied and Environmental Microbiology, 70, 7046, 10.1128/AEM.70.12.7046-7052.2004 Notomi, 2000, Loop-mediated isothermal amplification of DNA, Nucleic Acids Research, 28, e63, 10.1093/nar/28.12.e63 Pichon, 2006, Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling, Nucleic Acids Research, 34, e46, 10.1093/nar/gkl086 Quintela, 2019, Simultaneous colorimetric detection of a variety of Salmonella spp. in food and environmental samples by optical biosensing using oligonucleotide-gold nanoparticles, Frontiers in Microbiology, 10, 1138, 10.3389/fmicb.2019.01138 Sange, 2019, Development and validation of a loop‐mediated isothermal amplification assay—a rapid and sensitive detection tool for Mycobacterium avium subsp. paratuberculosis in small ruminants, Journal of Applied Microbiology, 127, 47, 10.1111/jam.14284 Schrader, 2012, PCR inhibitors – occurrence, properties and removal, Journal of Applied Microbiology, 113, 1014, 10.1111/j.1365-2672.2012.05384.x Simmons, 2003, Recovery of Salmonella from retail broilers by a whole-carcass enrichment procedure, Journal of Food Protection, 66, 446, 10.4315/0362-028X-66.3.446 Stanaway, 2019, The global burden of non-typhoidal salmonella invasive disease: A systematic analysis for the global burden of disease study 2017, The Lancet Infectious Diseases, 19, 1312, 10.1016/S1473-3099(19)30418-9 Tang, 2012, Development and clinical verification of a loop-mediated isothermal amplification method for detection of Salmonella species in suspect infected ducks, Poultry Science, 91, 979, 10.3382/ps.2011-01992 Turki, 2012, Biofilm formation, virulence gene and multi-drug resistance in Salmonella Kentucky isolated in Tunisia, Food Research International, 45, 940, 10.1016/j.foodres.2011.05.031 Wolffs, 2005, Risk assessment of false-positive quantitative real-time PCR results in food, due to detection of DNA originating from dead cells, Journal of Microbiological Methods, 60, 315, 10.1016/j.mimet.2004.10.003 Yang, 2018, Loop-mediated isothermal amplification for Salmonella detection in food and feed: Current applications and future directions, Foodborne Pathogens and Disease, 15, 309, 10.1089/fpd.2018.2445 Yang, 2015, Evaluation of loop-mediated isothermal amplification for the rapid, reliable, and robust detection of Salmonella in produce, Food Microbiology, 46, 485, 10.1016/j.fm.2014.09.011 Zhang, 2012, Development of a fimY-based loop-mediated isothermal amplification assay for detection of Salmonella in food, Food Research International, 45, 1011, 10.1016/j.foodres.2011.02.015