Drosophila Interspecific Hybrids Phenocopy piRNA-Pathway Mutants
Tóm tắt
Từ khóa
Tài liệu tham khảo
PA Callinan, 2006, Retrotransposable elements and human disease, Genome Dyn, 1, 104, 10.1159/000092503
DJ Hedges, 2007, Inviting instability: transposable elements, double-strand breaks, and the maintenance of genome integrity, Mutat Res, 616, 46, 10.1016/j.mrfmmm.2006.11.021
MG Kidwell, 1979, Hybrid dysgenesis in <italic>DROSOPHILA MELANOGASTER</italic>: sterility resulting from gonadal dysgenesis in the <italic>P</italic>-<italic>M</italic> system, Genetics, 92, 1127, 10.1093/genetics/92.4.1127
MR Vilà, Higher processing rates of <italic>Alu-</italic>containing sequences in kidney tumors and cell lines with overexpressed <italic>Alu</italic>-mRNAs, Oncol Rep, 10, 1903
K Chalitchagorn, 2004, Distinctive pattern of <italic>LINE-1</italic> methylation level in normal tissues and the association with carcinogenesis, Oncogene, 23, 8841, 10.1038/sj.onc.1208137
G Howard, 2008, Activation and transposition of endogenous retroviral elements in hypomethylation induced tumors in mice, Oncogene, 27, 404, 10.1038/sj.onc.1210631
K Naito, 2006, Dramatic amplification of a rice transposable element during recent domestication, Proc Natl Acad Sci U S A, 103, 17620, 10.1073/pnas.0605421103
C Sun, 2012, LTR retrotransposons contribute to genomic gigantism in <italic>plethodontid</italic> salamanders, Genome Biol Evol, 4, 168, 10.1093/gbe/evr139
A Sánchez-Gracia, 2005, High rate of horizontal transfer of transposable elements in <italic>Drosophila</italic>, Trends Genet, 21, 200, 10.1016/j.tig.2005.02.001
C Bartolomé, 2009, Widespread evidence for horizontal transfer of transposable elements across <italic>Drosophila</italic> genomes, Genome Biol, 10, R22, 10.1186/gb-2009-10-2-r22
C Gilbert, 2010, A role for host-parasite interactions in the horizontal transfer of transposons across phyla, Nature, 464, 1347, 10.1038/nature08939
E Lerat, 2011, Comparative analysis of transposable elements in the <italic>melanogaste</italic>r subgroup sequenced genomes, Gene, 473, 100, 10.1016/j.gene.2010.11.009
C Klattenhoff, 2008, Biogenesis and germline functions of piRNAs, Development, 135, 3, 10.1242/dev.006486
K-A Senti, 2010, The piRNA pathway: a fly's perspective on the guardian of the genome, Trends Genet, 26, 499, 10.1016/j.tig.2010.08.007
C Rouget, 2010, Maternal mRNA deadenylation and decay by the piRNA pathway in the early <italic>Drosophila</italic> embryo, Nature, 467, 1128, 10.1038/nature09465
A Vourekas, 2012, Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis, Nat Struct Mol Biol, 19, 773, 10.1038/nsmb.2347
J Brennecke, 2007, Discrete small RNA-generating loci as master regulators of transposon activity in <italic>Drosophila</italic>, Cell, 128, 1089, 10.1016/j.cell.2007.01.043
CD Malone, 2009, Specialized piRNA pathways act in germline and somatic tissues of the <italic>Drosophila</italic> ovary, Cell, 137, 522, 10.1016/j.cell.2009.03.040
J Lu, 2010, Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in <italic>Drosophila</italic>, Genome Res, 20, 212, 10.1101/gr.095406.109
JS Khurana, 2011, Adaptation to <italic>P</italic> element transposon invasion in <italic>Drosophila melanogaster</italic>, Cell, 147, 1551, 10.1016/j.cell.2011.11.042
AD Haase, 2010, Probing the initiation and effector phases of the somatic piRNA pathway in <italic>Drosophila</italic>, Genes Dev, 24, 2499, 10.1101/gad.1968110
JP Blumenstiel, 2005, Evidence for maternally transmitted small interfering RNA in the repression of transposition in <italic>Drosophila virilis</italic>, Proc Natl Acad Sci U S A, 102, 15965, 10.1073/pnas.0508192102
J Brennecke, 2008, An epigenetic role for maternally inherited piRNAs in transposon silencing, Science, 322, 1387, 10.1126/science.1165171
S Chambeyron, 2008, piRNA-mediated nuclear accumulation of retrotransposon transcripts in the <italic>Drosophila</italic> female germline, Proc Natl Acad Sci U S A, 105, 14964, 10.1073/pnas.0805943105
NV Rozhkov, 2010, Small RNA-based silencing strategies for transposons in the process of invading <italic>Drosophila</italic> species, RNA, 16, 1634, 10.1261/rna.2217810
PM Bingham, 1982, The molecular basis of <italic>P</italic>-<italic>M</italic> hybrid dysgenesis: the role of the P element, a <italic>P</italic>-strain-specific transposon family, Cell, 29, 995, 10.1016/0092-8674(82)90463-9
A Bucheton, 1984, The molecular basis of I-R hybrid dysgenesis in <italic>Drosophila melanogaster</italic>: identification, cloning, and properties of the <italic>I</italic> factor, Cell, 38, 153, 10.1016/0092-8674(84)90536-1
MB Evgen'ev, 1997, Penelope, a new family of transposable elements and its possible role in hybrid dysgenesis in <italic>Drosophila virilis</italic>, Proc Natl Acad Sci U S A, 94, 196, 10.1073/pnas.94.1.196
T Josse, 2007, Telomeric trans-silencing: an epigenetic repression combining RNA silencing and heterochromatin formation, PLoS Genet, 3, 1633, 10.1371/journal.pgen.0030158
DJ Begun, 2007, Population genomics: whole-genome analysis of polymorphism and divergence in <italic>Drosophila simulans</italic>, PLoS Biol, 5, e310, 10.1371/journal.pbio.0050310
AM Larracuente, 2008, Evolution of protein-coding genes in <italic>Drosophila</italic>, Trends Genet, 24, 114, 10.1016/j.tig.2007.12.001
DJ Obbard, 2009, The evolution of RNAi as a defence against viruses and transposable elements, Philos Trans R Soc Lond B Biol Sci, 364, 99, 10.1098/rstb.2008.0168
TFC Mackay, 2012, The <italic>Drosophila melanogaster</italic> Genetic Reference Panel, Nature, 482, 173, 10.1038/nature10811
K Tamura, 2004, Temporal patterns of fruit fly (<italic>Drosophila</italic>) evolution revealed by mutation clocks, Mol Biol Evol, 21, 36, 10.1093/molbev/msg236
DA Wheeler, 1991, Molecular transfer of a species-specific behavior from <italic>Drosophila simulans</italic> to <italic>Drosophila melanogaster</italic>, Science, 251, 1082, 10.1126/science.1900131
DC Presgraves, 2003, Adaptive evolution drives divergence of a hybrid inviability gene between two species of <italic>Drosophila</italic>, Nature, 423, 715, 10.1038/nature01679
DA Barbash, 2004, Functional divergence caused by ancient positive selection of a <italic>Drosophila</italic> hybrid incompatibility locus, PLoS Biol, 2, e142, 10.1371/journal.pbio.0020142
DA Barbash, 2003, A novel system of fertility rescue in <italic>Drosophila</italic> hybrids reveals a link between hybrid lethality and female sterility, Genetics, 163, 217, 10.1093/genetics/163.1.217
D Handler, 2011, A systematic analysis of <italic>Drosophila</italic> TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors, EMBO J, 30, 3977, 10.1038/emboj.2011.308
VV Vagin, 2004, The RNA interference proteins and <italic>vasa</italic> locus are involved in the silencing of retrotransposons in the female germline of <italic>Drosophila melanogaster</italic>, RNA Biol, 1, 54, 10.4161/rna.1.1.943
MS Klenov, 2007, Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the <italic>Drosophila melanogaster</italic> germline, Nucleic Acids Res, 35, 5430, 10.1093/nar/gkm576
A Pane, 2007, <italic>zucchini</italic> and <italic>squash</italic> encode two putative nucleases required for rasiRNA production in the <italic>Drosophila</italic> germline, Dev Cell, 12, 851, 10.1016/j.devcel.2007.03.022
AK Lim, 2007, Unique germ-line organelle, nuage, functions to repress selfish genetic elements in <italic>Drosophila melanogaster</italic>, Proc Natl Acad Sci U S A, 104, 6714, 10.1073/pnas.0701920104
C Klattenhoff, 2009, The <italic>Drosophila</italic> HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters, Cell, 138, 1137, 10.1016/j.cell.2009.07.014
C Li, 2009, Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies, Cell, 137, 509, 10.1016/j.cell.2009.04.027
H Qi, 2011, The Yb body, a major site for Piwi-associated RNA biogenesis and a gateway for Piwi expression and transport to the nucleus in somatic cells, J Biol Chem, 286, 3789, 10.1074/jbc.M110.193888
AL Zamparini, 2011, Vreteno, a gonad-specific protein, is essential for germline development and primary piRNA biogenesis in <italic>Drosophila</italic>, Development, 138, 4039, 10.1242/dev.069187
JB Preall, 2012, <italic>shutdown</italic> is a component of the <italic>Drosophila</italic> piRNA biogenesis machinery, RNA, 18, 1446, 10.1261/rna.034405.112
AG Clark, 2007, Evolution of genes and genomes on the <italic>Drosophila</italic> phylogeny, Nature, 450, 203, 10.1038/nature06341
RE Schaefer, 1979, Hybrid dysgenesis in <italic>DROSOPHILA MELANOGASTER</italic>: morphological and cytological studies of ovarian dysgenesis, Genetics, 92, 1141, 10.1093/genetics/92.4.1141
R Moschetti, 2010, Genomic instability of <italic>I</italic> elements of Drosophila melanogaster in absence of dysgenic crosses, PloS One, 5, e13142, 10.1371/journal.pone.0013142
J González, 2008, High rate of recent transposable element-induced adaptation in <italic>Drosophila melanogaster</italic>, PLoS Biol, 6, e251, 10.1371/journal.pbio.0060251
DA Petrov, 2011, Population genomics of transposable elements in <italic>Drosophila melanogaster</italic>, Mol Biol Evol, 28, 1633, 10.1093/molbev/msq337
LS Gunawardane, 2007, A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in <italic>Drosophila</italic>, Science, 315, 1587, 10.1126/science.1140494
L Liang, 1994, Localization of vasa protein to the <italic>Drosophila</italic> pole plasm is independent of its RNA-binding and helicase activities, Development, 120, 1201, 10.1242/dev.120.5.1201
SD Findley, 2003, Maelstrom, a <italic>Drosophila</italic> spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage, Development, 130, 859, 10.1242/dev.00310
VS Patil, 2010, Repression of retroelements in Drosophila germline via piRNA pathway by the Tudor domain protein Tejas, Current Biol, 20, 724, 10.1016/j.cub.2010.02.046
D Olivieri, 2012, The cochaperone shutdown defines a group of biogenesis factors essential for all piRNA populations in <italic>Drosophila</italic>, Mol Cell
DC Presgraves, 2010, The molecular evolutionary basis of species formation, Nat Rev Genet, 11, 175, 10.1038/nrg2718
S Maheshwari, 2011, The genetics of hybrid incompatibilities, Annu Rev Genet, 45, 331, 10.1146/annurev-genet-110410-132514
JA Coyne, 1986, Meiotic segregation and male recombination in interspecific hybrids of <italic>Drosophila</italic>, Genetics, 114, 485, 10.1093/genetics/114.2.485
JA Coyne, 1989, Mutation rates in hybrids between sibling species of <italic>Drosophila</italic>, Heredity, 63, 155, 10.1038/hdy.1989.87
A Bucheton, 1975, [A partially inheritable aging influence on a non-Mendelian female sterility in <italic>Drosophila melanogaster</italic>], C R Acad Sci Hebd Seances Acad Sci D, 281, 1035
A Bucheton, 1979, Non-Mendelian female sterility in <italic>Drosophila melanogaster</italic>: influence of aging and thermic treatments. III. Cumulative effects induced by these factors, Genetics, 93, 131, 10.1093/genetics/93.1.131
NJ Brideau, 2006, Two Dobzhansky-Muller genes interact to cause hybrid lethality in <italic>Drosophila</italic>, Science, 314, 1292, 10.1126/science.1133953
JJ Bayes, 2009, Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species, Science, 326, 1538, 10.1126/science.1181756
PM Ferree, 2009, Species-specific heterochromatin prevents mitotic chromosome segregation to cause hybrid lethality in <italic>Drosophila</italic>, PLoS Biol, 7, e1000234, 10.1371/journal.pbio.1000234
RJ O'Neill, 1998, Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid, Nature, 393, 68, 10.1038/29985
C Josefsson, 2006, Parent-dependent loss of gene silencing during interspecies hybridization, Current Biol, 16, 1322, 10.1016/j.cub.2006.05.045
M Kenan-Eichler, 2011, Wheat hybridization and polyploidization results in deregulation of small RNAs, Genetics, 188, 263, 10.1534/genetics.111.128348
NJ Bowen, 2001, <italic>Drosophila</italic> euchromatic LTR retrotransposons are much younger than the host species in which they reside, Genome Res, 11, 1527, 10.1101/gr.164201
CM Bergman, 2007, Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in <italic>Drosophila melanogaster</italic>, Proc Natl Acad Sci U S A, 104, 11340, 10.1073/pnas.0702552104
W Vu, 2011, Genetic variation of <italic>copia</italic> suppression in <italic>Drosophila melanogaster</italic>, Heredity, 106, 207, 10.1038/hdy.2010.41
X Zhang, 2006, Cucumber mosaic virus-encoded 2b suppressor inhibits <italic>Arabidopsis</italic> Argonaute1 cleavage activity to counter plant defense, Genes Dev, 20, 3255, 10.1101/gad.1495506
G Singh, 2009, Suppression of RNA silencing by Flock house virus B2 protein is mediated through its interaction with the PAZ domain of Dicer, FASEB J, 23, 1845, 10.1096/fj.08-125120
T Csorba, 2010, Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1, Plant J, 62, 463, 10.1111/j.1365-313X.2010.04163.x
AN Harris, 2001, Aubergine encodes a <italic>Drosophila</italic> polar granule component required for pole cell formation and related to eIF2C, Development, 128, 2823, 10.1242/dev.128.14.2823
S Maheshwari, 2012, Cis-by-trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene, PLoS Genet, 8, e1002597, 10.1371/journal.pgen.1002597
AC Groth, 2004, Construction of transgenic <italic>Drosophila</italic> by using the site-specific integrase from phage phiC31, Genetics, 166, 1775, 10.1534/genetics.166.4.1775
KJT Venken, 2006, P[acman]: a BAC transgenic platform for targeted insertion of large DNA fragments in <italic>D. melanogaster</italic>, Science, 314, 1747, 10.1126/science.1134426
WE Theurkauf, 1994, Immunofluorescence analysis of the cytoskeleton during oogenesis and early embryogenesis, Methods Cell Biol, 44, 489, 10.1016/S0091-679X(08)60928-0
NJ Clegg, 1997, <italic>maelstrom</italic> is required for an early step in the establishment of <italic>Drosophila</italic> oocyte polarity: posterior localization of <italic>grk</italic> mRNA, Development, 124, 4661, 10.1242/dev.124.22.4661
HA Cook, 2004, The <italic>Drosophila</italic> SDE3 homolog <italic>armitage</italic> is required for <italic>oska</italic>r mRNA silencing and embryonic axis specification, Cell, 116, 817, 10.1016/S0092-8674(04)00250-8
NC Lau, 2001, An abundant class of tiny RNAs with probable regulatory roles in <italic>Caenorhabditis elegans</italic>, Science, 294, 858, 10.1126/science.1065062