Development of public immortal mapping populations, molecular markers and linkage maps for rapid cycling Brassica rapa and B. oleracea
Tóm tắt
Từ khóa
Tài liệu tham khảo
Ayele M, Haas BJ, Kumar N, Wu H, Xiao Y, Van Aken S, Utterback TR, Wortman JR, White OR, Town CD (2005) Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis. Genome Res 15:487–495
Babula D, Kaczmarek M, Barakat A, Delseny M, Quiros CF, Sadowski J (2003) Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map. Mol Genet Genomics 268:656–665
Bohuon EJR, Keith DJ, Parkin IAP, Sharpe AG, Lydiate DJ (1996) Alignment of the conserved C genomes of Brassica oleracea and B. napus. Theor Appl Genet 93:833–839
Camargo LEA, Savides L, Jung G, Nienhuis J, Osborn TC (1997) Location of the self-incompatibility locus in an RFLP and RAPD map of Brassica oleracea. J Hered 88:57–60
Cavell AC, Lydiate D, Parkin IAP, Dean C, Trick M (1998) Collinearity between a 30-centimorgan segment in Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome. Genome 41:62–69
Cheung WY, Champagne G, Hubert N, Landry BS (1997) Comparison of the genetic maps of Brassica napus and Brassica oleracea. Theor Appl Genet 94:569–582
Choi SR, Teakle GR, Prikshit P, Kim JH, Allender CJ, Beynon E, Piao ZY, Soengas P, Han TH, King GJ, Barker GC, Hand P, Lydiate DJ, Batley J, Edwards D, Koo DH, Bang JW, Park B-S, Lim YP (2007) The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor Appl Genet 115:777–792
Chyi Y-S, Hoenecke ME, Sernyk JL (1992) A genetic linkage map of restriction fragment length polymorphism loci for Brassica rapa (syn. Campestris). Genome 35:746–757
Foisset N, Delourme R (1996) Segregation distortion in androgenic plants. In: Mohan Jain S, Sopory SK, Veilleux RE (eds) In vitro haploid production in higher plants. Kluwer, The Netherlands
Gaeta RT, Pires JC, Iniguez-Luy FL, Leon E, Osborn TC (2007) Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell 19:3403–3417
Gao M, Li G, Bo Yang B, Qiu D, Farnham M, Quiros C (2007) High-density Brassica oleracea linkage map: identification of useful new linkages. Theor Appl Genet 115:277–287
Havey MJ, Muehlbauer FJ (1989) Linkages between restriction fragment length, isozyme, and morphological markers in lentil. Theor Appl Genet 77:395–401
Hu J, Sadowski J, Osborn TC, Landry BS, Quiros CF (1998) Linkage group alignment from four independent B. oleracea RFLP maps. Genome 41:226–235
Inaba R, Nishio T (2002) Phylogenetic analysis of Brassiceae based on the nucleotide sequences of the S-locus related gene, SLR1. Theor Appl Genet 105:1159–1165
Iniguez-Luy FL, Vande Voort A, Osborn TC (2008) Development of a set of SSR markers derived from genomic sequence of a rapid cycling Brassica oleracea L. genotype. Theor Appl Genet 117:977–985
Johnston JS, Pepper AE, Hall AE, Chen ZJ, Hodnett G, Drabek J, Lopez R, Price HJ (2005) Evolution of genome size in Brassicaceae. Ann Bot London 95:229–235
Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR (2005) Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Res 15:496–504
Kianian SF, Quiros CF (1992) Generation of a Brassica oleracea composite RFLP map: linkage arrangements among various populations and evolutionary implications. Theor Appl Genet 84:544–554
Kidwell KK, Osborn TC (1992) Simple plant DNA isolation procedure. In: Beckman J, Osborn TC (eds) Plant genomes: methods for genetic and physical mapping. Kluwer, The Netherlands
Kim JS, Chung TY, King GJ, Jin M, Yang T-J, Jin Y-M, Kim H-I, Park B-S (2006) A sequence-tagged linkage map of Brassica rapa. Genetics 174:29–39
Kole C, Kole P, Vogelzang R, Osborn TC (1997) Genetic linkage map of a Brassica rapa recombinant inbred population. J Hered 88:553–556
Lagercrantz U (1998) Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosomes fusions and frequent rearrangements. Genetics 150:1217–1228
Lagercrantz U, Putterill J, Coupland G, Lydiate DJ (1996) Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time. Plant J 9:13–20
Lan TH, Paterson AH (2000) Comparative mapping of quantitative trait Loci sculpting the curd of Brassica oleracea. Genetics 155:1927–1954
Landry BS, Hubert N, Crete R, Chang M, Lincoln SE, Ethos T (1992) A genetic map of Brassica oleracea based on RFLP markers detected with expressed DNA sequences and mapping of resistance genes to race 2 of Plasmodiophora brassicae (Woronin). Genome 35:409–419
Li Y-C, Korol AB, Fahima T, Beiles A, Nevo E (2002) Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol 11:2453–2465
Li G, Gao M, Yang B, Quiros CF (2003) Gene for gene alignment between the Brassica and Arabidopsis genomes by direct transcriptome mapping. Theor Appl Genet 107:168–180
Li Y-C, Korol AB, Fahima T, Nevo E (2004) Microsatellites within genes: structure, function, and evolution. Mol Biol Evol 21:991–1007
Lowe AJ, Moule C, Trick M, Edwards KJ (2004) Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor Appl Genet 108:1103–1112
Lukens L, Zou F, Lydiate DJ, Parkin IAP, Osborn TC (2003) Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164:359–372
Lukens L, Quijada PA, Udall J, Pires JC, Schranz ME, Osborn TC (2004) Genome redundancy and plasticity within ancient and recent Brassica crop species. Biol J Linn Soc 82:665–674
Lukens L, Pires JC, Leon E, Vogelzang R, Oslach L, Osborn TC (2005) Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol 140:336–348
Moore RC, Purugganan MD (2005) The evolutionary dynamics of plant duplicate genes. Curr Opin Plant Biol 8:122–128
O’Neill CM, Bancroft I (2000) Comparative physical mapping of segments of the genomes of Brassica oleracea var. alboglabra that are homoeologuos to sequenced regions of chromosome 4 and 5 of Arabidopsis thaliana. Plant J 23:233–243
Osborn TC, Lukens L (2003) The molecular genetic basis of flowering time variation in Brassica species. In: Nagata T, Tabata S (eds) Brassica and legumes: from gene structure to breeding. Springer, GR, Berlin
Osborn TC, Kole C, Parkin IAP, Sharpe AG, Kuiper M, Lydiate DJ, Trick M (1997) Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana. Genetics 146:1123–1129
Parkin IAP, Lydiate DJ (1997) Conserved patterns of chromosome pairing and recombination in Brassica napus crosses. Genome 40:496–504
Parkin IAP, Sharpe AG, Keith DJ, Lydiate DJ (1995) Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome 38:1122–1131
Parkin IAP, Lydiate DJ, Trick M (2002) Assessing the level of collinearity between Arabidopsis thaliana and Brassica napus for A. thaliana chromosome 5. Genome 45:356–366
Parkin IAP, Gulden SM, Sharpe AG, Lukens L, Trick M, Osborn TC, Lydiate DJ (2005) Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171:765–781
Paterson AH, Deverna JW, Lanini B, Tanksley SD (1990) Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. Genetics 124:735–742
Paterson AH, Lan TH, Amasino R, Osborn TC, Quiros CF (2001). Brassica genomics: a complement to, and early beneficiary of, the Arabidopsis sequence. Genome Biol Rev 2:1011.1–1011.4
Poehlman JM, Sleper DA (1995) Breeding field crops, 4th edn. Iowa State University Press, Ames
Ramsay LD, Jennings DE, Bohuon EJR, Arthur AE, Lydiate DJ, Kearsey MJ, Marshall DF (1996) The construction of a substitution library of recombinant backcross lines in Brassica oleracea for the precision mapping of quantitavie trait loci. Genome 39:558–567
Ryder CD, Smith LB, Teakle GR, King GJ (2001) Contrasting genome organization: two regions of the Brassica oleracea genome compared with collinear regions of the Arabidopsis thaliana genome. Genome 44:808–817
Schranz ME, Quijada P, Sung S-B, Lukens L, Amasino R, Osborn TC (2002) Characterization and effects of the replicated flowering time gene FLC in Brassica rapa. Genetics 162:1457–1468
Sebastian RL, Howell EC, King GJ, Marshall DF, Kearsey MJ (2000) An integrated AFLP and RFLP Brassica oleracea linkage map from two morphologically distinct doubled-haploid mapping populations. Theor Appl Genet 100:75–81
Sharpe AG, Parkin IAP, Keith DJ, Lydiate DJ (1995) Frequent nonreciprocal translocations in the amphidiploid genome of oilseed rape (Brassica napus). Genome 38:1112–1121
Slocum MK, Figdore SS, Kennard WC, Suzuki JY, Osborn TC (1990) Linkage arrangement of restriction fragment length polymorphism loci in Brassica oleracea. Theor Appl Genet 80:57–64
Song KM, Suzuki JY, Slocum MK, Williams PH, Osborn TC (1991) A linkage map of Brassica rapa (syn. campestris) based on restriction fragment length polymorphism loci. Theor Appl Genet 82:296–304
Suwabe K, Iketani H, Nunome TK, Hirai M (2002) Isolation and characterization of microsatellites in Brassica rapa L. Theor Appl Genet 104:1092–1098
Suwabe K, Tsukazaki H, Iketani H, Hatakeyama K, Kondo M, Fujimura M, Nunome T, Fukuoka H, Hiria M, Matsumoto S (2006) Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the origin of clubroot resistance. Genetics 173:309–319
Szewc-McFadden AK, Kresovich S, Bliek SM, Mitchell SE, McFerson J (1996) Identification of polymorphic, conserved simple sequence repeats (SSRs) in cultivated Brassica species. Theor Appl Genet 93:534–538
Teutonico RA, Osborn TC (1994) Mapping of RFLP and qualitative trait loci in Brassica rapa and comparison to linkage maps of B. napus, B. oleracea and Arabidopsis thaliana. Theor Appl Genet 89:885–894
Udall JA (2003) A genetic study of oilseed Brassica napus L.: mapping chromosome rearrangements and quantitative trait loci. Ph.D. Thesis. Department of Agronomy. University of Wisconsin-Madison, Madison
Udall JA, Quijada PA, Osborn TC (2005) Detection of chromosomal rearrangements derived from homeologous recombination in four mapping populations of Brassica napus L. Genetics 169:967–979
Uzunova MI, Ecke W (1999) Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.). Plant Breed 118:323–326
Van Ooijen JW, Voorrips RE (2001) JoinMap® Version 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen