Developing Objective Sensitivity Analysis of Periodic Systems: Case Studies of Biological Oscillators
Tài liệu tham khảo
Goldbeter, 1995, A model for circadian oscillations in the Drosophila period protein (PER), Proceedings of the Royal Society B: Biological Sciences, 261, 319, 10.1098/rspb.1995.0153
Goldbeter, 1996
Kruse, 2005, Oscillations in cell biology, Current Opinion in Cell Biology, 17, 20, 10.1016/j.ceb.2004.12.007
Edery, 2000, Circadian rhythms in a nutshell, Physiological Genomics, 3, 59, 10.1152/physiolgenomics.2000.3.2.59
Klipp, 2005
Mirsky, 2009, Automatic control in systems biology, 1335
Varma, 1999
Tomovic, 1972
Larter, 1983, Sensitivity analysis of autonomous oscillators. Separation of secular terms and determination of structural stability, The Journal of Physical Chemistry, 87, 3114, 10.1021/j100239a032
Larter, 1984, Sensitivity analysis of limit cycles with application to the Brusselator, Journal of Chemical Physics, 80, 4120, 10.1063/1.447293
Ingalls, 2004, Autonomously oscillating biochemical systems: parametric sensitivity of extrema and period, IEE Proceedings-System Biology, 1, 62, 10.1049/sb:20045005
Bagheri, 2007, Quantitative performance metrics for robustness in circadian rhythms, Bioinformatics, 23, 358, 10.1093/bioinformatics/btl627
Wilkins, 2009, Sensitivity analysis for oscillating dynamical systems, SIAM Journal on Scientific Computing, 31, 2706, 10.1137/070707129
Nikolaev, 2007, Sensitivity and control analysis of periodically forced reaction networks using the Green's function method, Journal of Theoretical Biology, 247, 442, 10.1016/j.jtbi.2007.02.013
Taylor, 2008, Sensitivity measures for oscillating systems: application to mammalian circadian gene network, IEEE Transactions on Automatic Control, 53, 177, 10.1109/TAC.2007.911364
Gunawan, 2006, Isochron-based phase response analysis of circadian rhythms, Biophysical Journal, 91, 2131, 10.1529/biophysj.105.078006
Zak, 2005, Sensitivity analysis of oscillatory (bio) chemical systems, Computers and Chemical Engineering, 29, 663, 10.1016/j.compchemeng.2004.08.021
Turanyi, 1990, Sensitivity analysis of complex kinetic systems: tools and applications, Journal of Mathematical Chemistry, 5, 203, 10.1007/BF01166355
Lu, 2010, Sensitivity analysis of oscillatory biological systems with a SVD-based algorithm, Systemics and Informatics World Network, 10, 37
Kramer, 1984, Sensitivity analysis of oscillatory systems, Applied Mathematical Modelling, 8, 328, 10.1016/0307-904X(84)90146-X
Stelling, 2004, Robustness properties of circadian clock architectures, Proceedings of the National Academy of Sciences of the United States of America, 101, 13210, 10.1073/pnas.0401463101
Hayden, 2008, Shared principles in NF-κB signaling, Cell, 132, 344, 10.1016/j.cell.2008.01.020
Hoffmann, 2002, The IκB-NF-κB signaling module: temporal control and selective gene activation, Science, 298, 1241, 10.1126/science.1071914
Ashall, 2009, Pulsatile stimulation determines timing and specificity of NF-κB-dependent transcription, Science, 324, 242, 10.1126/science.1164860
Lu, 2010, A systematic approach in analyzing sustained oscillations in an NF-κB signal transduction pathway system, Acta Biophysica Sinica, 26, 406
Yue, 2008, Sensitivity analysis and robust experimental design of a signal transduction pathway system, International Journal of Chemical Kinetics, 40, 730, 10.1002/kin.20369
Kearns, 2006, IκBɛ provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression, Journal of Cell Biology, 173, 659, 10.1083/jcb.200510155