Daughter-Specific Transcription Factors Regulate Cell Size Control in Budding Yeast

PLoS Biology - Tập 7 Số 10 - Trang e1000221
Stefano Di Talia1, Hongyin Wang2, Jan M. Skotheim1, Adam P. Rosebrock2, Bruce Futcher2, Frederick R. Cross1
1The Rockefeller University, New York, New York, United States of America.
2Department of Molecular Genetics and Microbiology, SUNY at Stony Brook, Stony Brook, New York, United States of America

Tóm tắt

Từ khóa


Tài liệu tham khảo

L. H Hartwell, 1974, Genetic control of the cell division cycle in yeast., Science, 183, 46, 10.1126/science.183.4120.46

K Nasmyth, 1993, Regulating the HO endonuclease in yeast., Curr Opin Genet Dev, 3, 286, 10.1016/0959-437X(93)90036-O

L. H Hartwell, 1977, Unequal division in Saccharomyces cerevisiae and its implications for the control of cell division., J Cell Biol, 75, 422, 10.1083/jcb.75.2.422

G. C Johnston, 1977, Coordination of growth with cell division in the yeast Saccharomyces cerevisiae., Exp Cell Res, 105, 79, 10.1016/0014-4827(77)90154-9

S Di Talia, 2007, The effects of molecular noise and size control on variability in the budding yeast cell cycle., Nature, 448, 947, 10.1038/nature06072

J. M Bean, 2006, Coherence and timing of cell cycle start examined at single-cell resolution., Mol Cell, 21, 3, 10.1016/j.molcel.2005.10.035

J. M Skotheim, 2008, Positive feedback of G1 cyclins ensures coherent cell cycle entry., Nature, 454, 291, 10.1038/nature07118

F. R Cross, 1988, DAF1, a mutant gene affecting size control, pheromone arrest, and cell cycle kinetics of Saccharomyces cerevisiae., Mol Cell Biol, 8, 4675, 10.1128/MCB.8.11.4675

L Dirick, 1995, Roles and regulation of Cln-Cdc28 kinases at the start of the cell cycle of Saccharomyces cerevisiae., EMBO J, 14, 4803, 10.1002/j.1460-2075.1995.tb00162.x

R Nash, 1988, The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog., EMBO J, 7, 4335, 10.1002/j.1460-2075.1988.tb03332.x

D Stuart, 1995, CLN3, not positive feedback, determines the timing of CLN2 transcription in cycling cells., Genes Dev, 9, 2780, 10.1101/gad.9.22.2780

M Tyers, 1993, Comparison of the Saccharomyces cerevisiae G1 cyclins: Cln3 may be an upstream activator of Cln1, Cln2 and other cyclins., EMBO J, 12, 1955, 10.1002/j.1460-2075.1993.tb05845.x

M Costanzo, 2004, CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast., Cell, 117, 899, 10.1016/j.cell.2004.05.024

R. A de Bruin, 2004, Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5., Cell, 117, 887, 10.1016/j.cell.2004.05.025

C Koch, 1996, Switching transcription on and off during the yeast cell cycle: Cln/Cdc28 kinases activate bound transcription factor SBF (Swi4/Swi6) at start, whereas Clb/Cdc28 kinases displace it from the promoter in G2., Genes Dev, 10, 129, 10.1101/gad.10.2.129

H Wijnen, 2002, The G(1) cyclin Cln3 promotes cell cycle entry via the transcription factor Swi6., Mol Cell Biol, 22, 4402, 10.1128/MCB.22.12.4402-4418.2002

P Jorgensen, 2004, How cells coordinate growth and division., Curr Biol, 14, R1014, 10.1016/j.cub.2004.11.027

R Shields, 1978, Cell size, cell cycle and transition probability in mouse fibroblasts., Cell, 15, 469, 10.1016/0092-8674(78)90016-8

P. G Lord, 1983, Rate of cell cycle initiation of yeast cells when cell size is not a rate-determining factor., J Cell Sci, 59, 183, 10.1242/jcs.59.1.183

A Colman-Lerner, 2001, Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates., Cell, 107, 739, 10.1016/S0092-8674(01)00596-7

E Mazanka, 2008, The NDR/LATS family kinase Cbk1 directly controls transcriptional asymmetry., PLoS Biol, 6, e203, 10.1371/journal.pbio.0060203

E. L Weiss, 2002, The Saccharomyces cerevisiae Mob2p-Cbk1p kinase complex promotes polarized growth and acts with the mitotic exit network to facilitate daughter cell-specific localization of Ace2p transcription factor., J Cell Biol, 158, 885, 10.1083/jcb.200203094

D Knapp, 1996, The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40SIC1., Mol Cell Biol, 16, 5701, 10.1128/MCB.16.10.5701

Y Wang, 2003, Exit from exit: resetting the cell cycle through Amn1 inhibition of G protein signaling., Cell, 112, 697, 10.1016/S0092-8674(03)00121-1

M. P Cosma, 2004, Daughter-specific repression of Saccharomyces cerevisiae HO: Ash1 is the commander., EMBO Rep, 5, 953, 10.1038/sj.embor.7400251

N Bobola, 1996, Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells., Cell, 84, 699, 10.1016/S0092-8674(00)81048-X

A Sil, 1996, Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene., Cell, 84, 711, 10.1016/S0092-8674(00)81049-1

T. L Laabs, 2003, ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae., Proc Natl Acad Sci U S A, 100, 10275, 10.1073/pnas.1833999100

S. G Elliott, 1978, Rate of macromolecular synthesis through the cell cycle of the yeast Saccharomyces cerevisiae., Proc Natl Acad Sci U S A, 75, 4384, 10.1073/pnas.75.9.4384

A Sveiczer, 1996, The size control of fission yeast revisited., J Cell Sci, 109(Pt 12), 2947, 10.1242/jcs.109.12.2947

H. J McBride, 1999, Distinct regions of the Swi5 and Ace2 transcription factors are required for specific gene activation., J Biol Chem, 274, 21029, 10.1074/jbc.274.30.21029

W. J Racki, 2000, Cbk1p, a protein similar to the human myotonic dystrophy kinase, is essential for normal morphogenesis in Saccharomyces cerevisiae., EMBO J, 19, 4524, 10.1093/emboj/19.17.4524

P Chartrand, 2002, Asymmetric sorting of ash1p in yeast results from inhibition of translation by localization elements in the mRNA., Mol Cell, 10, 1319, 10.1016/S1097-2765(02)00694-9

A. E Wheals, 1982, Size control models of Saccharomyces cerevisiae cell proliferation., Mol Cell Biol, 2, 361, 10.1128/MCB.2.4.361

P. R Dohrmann, 1992, Parallel pathways of gene regulation: homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase., Genes Dev, 6, 93, 10.1101/gad.6.1.93

W. P Voth, 2007, Forkhead proteins control the outcome of transcription factor binding by antiactivation., EMBO J, 26, 4324, 10.1038/sj.emboj.7601859

D Mumberg, 1994, Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression., Nucleic Acids Res, 22, 5767, 10.1093/nar/22.25.5767

P. T Spellman, 1998, Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization., Mol Biol Cell, 9, 3273, 10.1091/mbc.9.12.3273

M Sbia, 2008, Regulation of the yeast Ace2 transcription factor during the cell cycle., J Biol Chem, 283, 11135, 10.1074/jbc.M800196200

G Tebb, 1993, SWI5 instability may be necessary but is not sufficient for asymmetric HO expression in yeast., Genes Dev, 7, 517, 10.1101/gad.7.3.517

M. B Eisen, 1998, Cluster analysis and display of genome-wide expression patterns., Proc Natl Acad Sci U S A, 95, 14863, 10.1073/pnas.95.25.14863

C. T Harbison, 2004, Transcriptional regulatory code of a eukaryotic genome., Nature, 431, 99, 10.1038/nature02800

I Simon, 2001, Serial regulation of transcriptional regulators in the yeast cell cycle., Cell, 106, 697, 10.1016/S0092-8674(01)00494-9

C. J McInerny, 1997, A novel Mcm1-dependent element in the SWI4, CLN3, CDC6, and CDC47 promoters activates M/G1-specific transcription., Genes Dev, 11, 1277, 10.1101/gad.11.10.1277

V. L MacKay, 2001, Early cell cycle box-mediated transcription of CLN3 and SWI4 contributes to the proper timing of the G(1)-to-S transition in budding yeast., Mol Cell Biol, 21, 4140, 10.1128/MCB.21.13.4140-4148.2001

H. H Sillje, 1997, Effects of different carbon fluxes on G1 phase duration, cyclin expression, and reserve carbohydrate metabolism in Saccharomyces cerevisiae., J Bacteriol, 179, 6560, 10.1128/jb.179.21.6560-6565.1997

D. A Orlando, 2008, Global control of cell-cycle transcription by coupled CDK and network oscillators., Nature, 453, 944, 10.1038/nature06955

M. E Maxon, 2001, Ash1p is a site-specific DNA-binding protein that actively represses transcription., Proc Natl Acad Sci U S A, 98, 1495, 10.1073/pnas.98.4.1495

N Colomina, 2008, Whi3, a developmental regulator of budding yeast, binds a large set of mRNAs functionally related to the endoplasmic reticulum., J Biol Chem, 283, 28670, 10.1074/jbc.M804604200

E Gari, 2001, Whi3 binds the mRNA of the G1 cyclin CLN3 to modulate cell fate in budding yeast., Genes Dev, 15, 2803, 10.1101/gad.203501

R. S Nash, 2001, Isolation and characterization of WHI3, a size-control gene of Saccharomyces cerevisiae., Genetics, 157, 1469, 10.1093/genetics/157.4.1469

E Verges, 2007, Cyclin Cln3 is retained at the ER and released by the J chaperone Ydj1 in late G1 to trigger cell cycle entry., Mol Cell, 26, 649, 10.1016/j.molcel.2007.04.023

H Wang, 2004, Recruitment of Cdc28 by Whi3 restricts nuclear accumulation of the G1 cyclin-Cdk complex to late G1., EMBO J, 23, 180, 10.1038/sj.emboj.7600022

F. R Cross, 1989, Further characterization of a size control gene in Saccharomyces cerevisiae., J Cell Sci, Suppl 12, 117, 10.1242/jcs.1989.Supplement_12.10

N. E Buchler, 2009, Protein sequestration generates a flexible ultrasensitive response in a genetic network., Mol Syst Biol, 5, 272, 10.1038/msb.2009.30

C. L Denis, 1983, mRNA levels for the fermentative alcohol dehydrogenase of Saccharomyces cerevisiae decrease upon growth on a nonfermentable carbon source., J Biol Chem, 258, 1165, 10.1016/S0021-9258(18)33174-0

B. L Schneider, 2004, Growth rate and cell size modulate the synthesis of, and requirement for, G1-phase cyclins at start., Mol Cell Biol, 24, 10802, 10.1128/MCB.24.24.10802-10813.2004

B. K Han, 2003, The G1 cyclin Cln3p controls vacuolar biogenesis in Saccharomyces cerevisiae., Genetics, 165, 467, 10.1093/genetics/165.2.467

S Mangan, 2003, Structure and function of the feed-forward loop network motif., Proc Natl Acad Sci U S A, 100, 11980, 10.1073/pnas.2133841100

D. O Inglis, 2002, Ash1 protein, an asymmetrically localized transcriptional regulator, controls filamentous growth and virulence of Candida albicans., Mol Cell Biol, 22, 8669, 10.1128/MCB.22.24.8669-8680.2002

S Munchow, 2002, Characterization of Candida albicans ASH1 in Saccharomyces cerevisiae., Curr Genet, 41, 73, 10.1007/s00294-002-0286-y

A. S Gladfelter, 2006, Asynchronous nuclear division cycles in multinucleated cells., J Cell Biol, 172, 347, 10.1083/jcb.200507003

M. P Cosma, 1999, Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter., Cell, 97, 299, 10.1016/S0092-8674(00)80740-0

H. R Horvitz, 1992, Mechanisms of asymmetric cell division: two Bs or not two Bs, that is the question., Cell, 68, 237, 10.1016/0092-8674(92)90468-R

J. A Knoblich, 2008, Mechanisms of asymmetric stem cell division., Cell, 132, 583, 10.1016/j.cell.2008.02.007

F Roegiers, 2004, Asymmetric cell division., Curr Opin Cell Biol, 16, 195, 10.1016/j.ceb.2004.02.010

L. A Buttitta, 2007, Mechanisms controlling cell cycle exit upon terminal differentiation., Curr Opin Cell Biol, 19, 697, 10.1016/j.ceb.2007.10.004

R. B Jensen, 2002, Dynamic localization of proteins and DNA during a bacterial cell cycle., Nat Rev Mol Cell Biol, 3, 167, 10.1038/nrm758

L Zhu, 2001, Coordinating cell proliferation and differentiation., Curr Opin Genet Dev, 11, 91, 10.1016/S0959-437X(00)00162-3

A Lasorella, 2006, Degradation of Id2 by the anaphase-promoting complex couples cell cycle exit and axonal growth., Nature, 442, 471, 10.1038/nature04895

A Oliva, 2005, The cell cycle-regulated genes of Schizosaccharomyces pombe., PLoS Biol, 3, e225, 10.1371/journal.pbio.0030225