Current insights on high priority antibiotic-resistant Salmonella enterica in food and foodstuffs: a review
Tài liệu tham khảo
World Health Organization (WHO). WHO estimates of the global burden of foodborne diseases. Technical report. Geneva: WHO. [Accessed 20 Dec 2018]. Available online: http://www.who.int/foodsafety/publications/foodborne_disease/fergreport/en/.
Scallan, 2011, Foodborne illness acquired in the United States—major pathogens, Emerg Infect Dis, 17, 7, 10.3201/eid1701.P11101
Dewey-Mattia, 2018, Surveillance for foodborne disease outbreaks - United States, 2009-2015, MMWR Surveill Summ, 67, 1, 10.15585/mmwr.ss6710a1
Centers for Disease Control and Prevention (CDC), 2019
World Health Organization (WHO). Salmonella (non-typhoidal). [Accessed 10 Jan 2019]. Available online: https://www.who.int/news-room/fact-sheets/detail/salmonella-(non-typhoidal).
Tacconelli, 2018, Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis, Lancet Infect Dis, 18, 318, 10.1016/S1473-3099(17)30753-3
Andino, 2015, Salmonella enterica: survival, colonization, and virulence differences among serovars, Sci World J, 2015, 10.1155/2015/520179
Villa, 2015, IncA/C plasmid carrying bla(NDM-1), bla(CMY-16), and fosA3 in a Salmonella enterica serovar corvallis strain isolated from a migratory wild bird in Germany, Antimicrob Agents Chemother, 59, 6597, 10.1128/AAC.00944-15
Fernandes, 2018, Zooanthroponotic transmission of drug-resistant Pseudomonas aeruginosa, Brazil, Emerg Infect Dis, 24, 1160, 10.3201/eid2406.180335
Sellera, 2019, Zooanthroponotic transmission of high-risk multidrug-resistant pathogens: a neglected public health issue, J Infect Public Health, 1
Founou, 2016, Antibiotic resistance in the food chain: a developing country-perspective, Front Microbiol, 7, 1881, 10.3389/fmicb.2016.01881
Frost, 2005, Mobile genetic elements: the agents of open source evolution, Nat Rev Microbiol, 3, 722, 10.1038/nrmicro1235
Soucy, 2015, Horizontal gene transfer: building the web of life, Nat Rev Genet, 16, 472, 10.1038/nrg3962
Rensing, 2018, Resistance to metals used in agricultural production, Microbiol Spectr, 6, 2, 10.1128/microbiolspec.ARBA-0025-2017
Fernández Márquez, 2017, Biocide tolerance and antibiotic resistance in Salmonella isolates from hen eggshells, Foodborne Pathog Dis, 14, 89, 10.1089/fpd.2016.2182
Oniciuc, 2019, Food processing as a risk factor for antimicrobial resistance spread along the food chain, Curr Opin Food Sci, 30, 21, 10.1016/j.cofs.2018.09.002
Foley, 2008, Salmonella challenges: prevalence in swine and poultry and potential pathogenicity of such isolates, J Anim Sci, 86, E149, 10.2527/jas.2007-0464
Foley, 2011, Population dynamics of Salmonella enterica serotypes in commercial egg and poultry production, Appl Environ Microbiol, 77, 4273, 10.1128/AEM.00598-11
Shah, 2017, Population dynamics and antimicrobial resistance of the most prevalent poultry-associated Salmonella serotypes, Poult Sci, 96, 687, 10.3382/ps/pew342
Antunes, 2016, Salmonellosis: the role of poultry meat, Clin Microbiol Infect, 22, 110, 10.1016/j.cmi.2015.12.004
Fedorka-Cray, 2001, Colonization of broiler chicks by Salmonella Typhimurium definitive phage type 104, J Food Prot, 64, 1698, 10.4315/0362-028X-64.11.1698
Olsen, 2003, Cross-contamination with Salmonella on a broiler slaughterhouse line demonstrated by use of epidemiological markers, J Appl Microbiol, 94, 826, 10.1046/j.1365-2672.2003.01911.x
Bai, 2015, Prevalence of Salmonella isolates from chicken and pig slaughterhouses and emergence of ciprofloxacin and cefotaxime co-resistant S. enterica Serovar Indiana in Henan, China, PLoS One, 10, 10.1371/journal.pone.0144532
Economou, 2015, Agriculture and food animals as a source of antimicrobial-resistant bacteria, Infect Drug Resist, 8, 49, 10.2147/IDR.S55778
Elnekave, 2018, Salmonella enterica serotype 4,[5],12:i:- in swine in the United States Midwest: an emerging multidrug-resistant clade, Clin Infect Dis, 66, 877, 10.1093/cid/cix909
Cray, 2000, Salmonella infections in pigs, 191
Bailey, 1996, Effect of hatching cabinet sanitation treatments on Salmonella cross contamination and hatchability of broiler eggs, Poult Sci, 75, 191, 10.3382/ps.0750191
Fedorka-Cray, 1995, Alternate routes of invasion may affect pathogenesis of Salmonella Typhimurium in swine, Infect Immun, 63, 2658, 10.1128/IAI.63.7.2658-2664.1995
Harris, 1997, Prevalence of Salmonella organisms in swine feed, J Am Vet Med Assoc, 210, 382
Bjork, 2018, Factors associated with Salmonella prevalence in U.S. swine grower-finisher operations, 2012, Foodborne Pathog Dis, 15, 489, 10.1089/fpd.2017.2364
Hurd, 2001, The effect of lairage on Salmonella isolation from market swine, J Food Prot, 64, 939, 10.4315/0362-028X-64.7.939
Colello, 2018, Detection and characterization of Salmonella serotypes in the production chain of two pig farms in Buenos Aires Province, Argentina, Front Microbiol, 9, 1370, 10.3389/fmicb.2018.01370
Vieira-Pinto, 2005, Occurrence of salmonella in the ileum, ileocolic lymph nodes, tonsils, mandibular lymph nodes and carcasses of pigs slaughtered for consumption, J Vet Med B Infect Dis Vet Public Health, 52, 476, 10.1111/j.1439-0450.2005.00892.x
Galié, 2018, Biofilms in the food industry: health aspects and control methods, Front Microbiol, 9, 898, 10.3389/fmicb.2018.00898
Oscar, 2013, Initial contamination of chicken parts with Salmonella at retail and cross-contamination of cooked chicken with Salmonella from raw chicken during meal preparation, J Food Prot, 76, 33, 10.4315/0362-028X.JFP-12-224
Mastrorilli, 2018, A comparative genomic analysis provides novel insights into the ecological success of the monophasic Salmonella serovar 4,[5],12:i, Front Microbiol, 9, 715, 10.3389/fmicb.2018.00715
Cao, 2018, Combination of multilocus sequence typing and pulsed-field gel electrophoresis reveals an association of molecular clonality with the emergence of extensive-drug resistance (XDR) in Salmonella, Microbiol Res, 207, 170, 10.1016/j.micres.2017.12.001
Sinwat, 2016, High prevalence and molecular characteristics of multidrug-resistant Salmonella in pigs, pork and humans in Thailand and Laos provinces, J Med Microbiol, 65, 1182, 10.1099/jmm.0.000339
Billman-Jacobe, 2018, pSTM6-275, a conjugative IncHI2 Plasmid of Salmonella enterica that confers antibiotic and heavy-metal resistance under changing physiological conditions, Antimicrob Agents Chemother, 62, 10.1128/AAC.02357-17
Kampf, 2018, Biocidal agents used for disinfection can enhance antibiotic resistance in gram-negative species, Antibiotics (Basel), 7
Buffet-Bataillon, 2016, Efflux pump induction by quaternary ammonium compounds and fluoroquinolone resistance in bacteria, Future Microbiol, 11, 81, 10.2217/fmb.15.131
Bengtsson-Palme, 2018, Environmental factors influencing the development and spread of antibiotic resistance, FEMS Microbiol Rev, 42, 1, 10.1093/femsre/fux053
O’Brien, 2013, The “decline and fall” of nontyphoidal salmonella in the United kingdom, Clin Infect Dis, 56, 705, 10.1093/cid/cis967
Le Hello, 2013, Highly drug-resistant Salmonella enterica serotype Kentucky ST198-X1: a microbiological study, Lancet Infect Dis, 13, 672, 10.1016/S1473-3099(13)70124-5
Ramadan, 2018, Draft genome sequences of two ciprofloxacin-resistant Salmonella enterica subsp. enterica serotype Kentucky ST198 isolated from retail chicken carcasses in Egypt, J Glob Antimicrob Resist, 14, 101, 10.1016/j.jgar.2018.06.012
Feasey, 2012, Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa, Lancet, 379, 2489, 10.1016/S0140-6736(11)61752-2
Kagambèga, 2018, Whole genome sequencing of multidrug-resistant Salmonella enterica serovar Typhimurium isolated from humans and poultry in Burkina Faso, Trop Med Health, 46, 4, 10.1186/s41182-018-0086-9
Almeida, 2017, Multilocus sequence typing of Salmonella Typhimurium reveals the presence of the highly invasive ST313 in Brazil, Infect Genet Evol, 51, 41, 10.1016/j.meegid.2017.03.009
Arnott, 2018, Multidrug-resistant Salmonella enterica 4,[5],12:i:- sequence type 34, New South Wales, Australia, 2016-2017, Emerg Infect Dis, 24, 751, 10.3201/eid2404.171619
Hammami, 1991, Nosocomial outbreak of acute gastroenteritis in a neonatal intensive care unit in Tunisia caused by multiply drug resistant Salmonella wien producing SHV-2 beta-lactamase, Eur J Clin Microbiol Infect Dis, 10, 641, 10.1007/BF01975816
Arlet, 2006, Salmonella resistant to extended-spectrum cephalosporins: prevalence and epidemiology, Microbes Infect, 8, 1945, 10.1016/j.micinf.2005.12.029
Bae, 2015, Characterization of extended-spectrum β-lactamase (ESBL) producing non-typhoidal Salmonella (NTS) from imported food products, Int J Food Microbiol, 214, 12, 10.1016/j.ijfoodmicro.2015.07.017
Riaño, 2006, Detection and characterization of extended-spectrum beta-lactamases in Salmonella enterica strains of healthy food animals in Spain, J Antimicrob Chemother, 58, 844, 10.1093/jac/dkl337
Hasman, 2005, Beta-Lactamases among extended-spectrum beta-lactamase (ESBL)-resistant Salmonella from poultry, poultry products and human patients in The Netherlands, J Antimicrob Chemother, 56, 115, 10.1093/jac/dki190
Politi, 2005, Repeated occurrence of diverse extended-spectrum beta-lactamases in minor serotypes of food-borne Salmonella enterica subsp. enterica, J Clin Microbiol, 43, 3453, 10.1128/JCM.43.7.3453-3456.2005
Weill, 2004, Emergence of extended-spectrum-beta-lactamase (CTX-M-9)-producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France, J Clin Microbiol, 42, 5767, 10.1128/JCM.42.12.5767-5773.2004
Rodríguez, 2009, Extended-spectrum {beta}-lactamases and AmpC {beta}-lactamases in ceftiofur-resistant Salmonella enterica isolates from food and livestock obtained in Germany during 2003-07, J Antimicrob Chemother, 64, 301, 10.1093/jac/dkp195
Eller, 2014, Emergence of extended-spectrum β-lactamase (ESBL) CTX-M-8 in Germany, J Antimicrob Chemother, 69, 562, 10.1093/jac/dkt387
Clemente, 2013, Occurrence of extended-spectrum β-lactamases among isolates of Salmonella enterica subsp. enterica from food-producing animals and food products, in Portugal, Int J Food Microbiol, 167, 221, 10.1016/j.ijfoodmicro.2013.08.009
Wong, 2013, Characterization of Salmonella food isolates with concurrent resistance to ceftriaxone and ciprofloxacin, Foodborne Pathog Dis, 10, 42, 10.1089/fpd.2012.1266
Jiang, 2014, Multiple transmissible genes encoding fluoroquinolone and third-generation cephalosporin resistance co-located in non-typhoidal Salmonella isolated from food-producing animals in China, Int J Antimicrob Agents, 43, 242, 10.1016/j.ijantimicag.2013.12.005
Noda, 2015, Increase in resistance to extended-spectrum cephalosporins in Salmonella isolated from retail chicken products in Japan, PLoS One, 10, 10.1371/journal.pone.0116927
Chon, 2015, High occurrence of extended-spectrum β-lactamase-producing Salmonella in broiler carcasses from poultry slaughterhouses in South Korea, Foodborne Pathog Dis, 12, 190, 10.1089/fpd.2014.1847
Choi, 2015, Incidence, antimicrobial resistance, and molecular characteristics of nontyphoidal Salmonella including extended-spectrum β-lactamase producers in retail chicken meat, J Food Prot, 78, 1932, 10.4315/0362-028X.JFP-15-145
Park, 2017, Comparison of the isolation rates and characteristics of Salmonella isolated from antibiotic-free and conventional chicken meat samples, Poult Sci, 96, 2831, 10.3382/ps/pex055
Nguyen, 2016, Prevalence, antibiotic resistance, and extended-spectrum and AmpC β-lactamase productivity of Salmonella isolates from raw meat and seafood samples in Ho Chi Minh City, Vietnam, Int J Food Microbiol, 236, 115, 10.1016/j.ijfoodmicro.2016.07.017
Nadimpalli, 2019, CTX-M-55-type ESBL-producing Salmonella enterica are emerging among retail meats in Phnom Penh, Cambodia, J Antimicrob Chemother, 74, 342, 10.1093/jac/dky451
Djeffal, 2017, Prevalence and clonal relationship of ESBL-producing Salmonella strains from humans and poultry in northeastern Algeria, BMC Vet Res, 13, 132, 10.1186/s12917-017-1050-3
Bauernfeind, 1992, A new plasmidic cefotaximase from patients infected with Salmonella Typhimurium, Infection, 20, 158, 10.1007/BF01704610
Fernandes, 2009, CTX-M-2-producing Salmonella Typhimurium isolated from pediatric patients and poultry in Brazil, Microb Drug Resist, 15, 317, 10.1089/mdr.2009.0050
Silva, 2013, Emergence of extended-spectrum-β-lactamase CTX-M-2-producing Salmonella enterica serovars Schwarzengrund and Agona in poultry farms, Antimicrob Agents Chemother, 57, 3458, 10.1128/AAC.05992-11
Brown, 2018, CTX-M-65 extended-spectrum β-lactamase-producing Salmonella enterica serotype infantis, United States, Emerg Infect Dis, 24, 2284, 10.3201/eid2412.180500
Tate, 2017, Comparative analysis of extended-spectrum-β-lactamase CTX-M-65-producing Salmonella enterica serovar infantis isolates from humans, food animals, and retail chickens in the United States, Antimicrob Agents Chemother, 61, 10.1128/AAC.00488-17
Cartelle Gestal, 2016, Characterization of a small outbreak of Salmonella enterica serovar Infantis that harbour CTX-M-65 in Ecuador, Braz J Infect Dis, 20, 406, 10.1016/j.bjid.2016.03.007
Riccobono, 2015, Characterization of IncI1 sequence type 71 epidemic plasmid lineage responsible for the recent dissemination of CTX-M-65 extended-spectrum β-lactamase in the Bolivian Chaco region, Antimicrob Agents Chemother, 59, 5340, 10.1128/AAC.00589-15
Fischer, 2013, Salmonella enterica subsp. enterica producing VIM-1 carbapenemase isolated from livestock farms, J Antimicrob Chemother, 68, 478, 10.1093/jac/dks393
Fischer, 2017, Spread and persistence of VIM-1 Carbapenemase-producing Enterobacteriaceae in three German swine farms in 2011 and 2012, Vet Microbiol, 200, 118, 10.1016/j.vetmic.2016.04.026
Wang, 2017, Genomic characterization of a large plasmid containing a blaNDM-1 gene carried on Salmonella enterica serovar Indiana C629 isolate from China, BMC Infect Dis, 17, 479, 10.1186/s12879-017-2515-5
Kempf, 2016, Colistin use and colistin resistance in bacteria from animals, Int J Antimicrob Agents, 48, 598, 10.1016/j.ijantimicag.2016.09.016
Liu, 2016, Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study, Lancet Infect Dis, 16, 161, 10.1016/S1473-3099(15)00424-7
Doumith, 2016, Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England and Wales, J Antimicrob Chemother, 71, 2300, 10.1093/jac/dkw093
Monte, 2017, Chicken meat as a reservoir of colistin-resistant Escherichia coli strains carrying mcr-1 genes in South America, Antimicrob Agents Chemother, 61, 10.1128/AAC.02718-16
Anjum, 2016, Colistin resistance in Salmonella and Escherichia coli isolates from a pig farm in Great Britain, J Antimicrob Chemother, 71, 2306, 10.1093/jac/dkw149
Veldman, 2016, Location of colistin resistance gene mcr-1 in Enterobacteriaceae from livestock and meat, J Antimicrob Chemother, 71, 2340, 10.1093/jac/dkw181
Figueiredo, 2016, Detection of an mcr-1-encoding plasmid mediating colistin resistance in Salmonella enterica from retail meat in Portugal, J Antimicrob Chemother, 71, 2338, 10.1093/jac/dkw240
Campos, 2016, MCR-1 in multidrug-resistant and copper-tolerant clinically relevant Salmonella 1,4,[5],12:i:- and S. Rissen clones in Portugal, 2011 to 2015, Euro Surveill, 21, 1, 10.2807/1560-7917.ES.2016.21.26.30270
Webb, 2016, Dissemination of the mcr-1 colistin resistance gene, Lancet Infect Dis, 16, 144, 10.1016/S1473-3099(15)00538-1
El Garch, 2018, mcr-1-like detection in commensal Escherichia coli and Salmonella spp. from food-producing animals at slaughter in Europe, Vet Microbiol, 213, 42, 10.1016/j.vetmic.2017.11.014
Borowiak, 2017, Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B, J Antimicrob Chemother, 72, 3317, 10.1093/jac/dkx327
Alba, 2018, Molecular epidemiology of mcr-encoded colistin resistance in enterobacteriaceae from food-producing animals in Italy revealed through the EU harmonized antimicrobial resistance monitoring, Front Microbiol, 9, 1217, 10.3389/fmicb.2018.01217
Carfora, 2018, Colistin resistance mediated by mcr-1 in ESBL-producing, multidrug resistant salmonella infantis in broiler chicken industry, Italy (2016-2017), Front Microbiol, 9, 1880, 10.3389/fmicb.2018.01880
Carattoli, 2017, Novel plasmid-mediated colistin resistance mcr-4 gene in Salmonella and Escherichia coli, Italy 2013, Spain and Belgium, 2015 to 2016, Euro Surveill, 22, 10.2807/1560-7917.ES.2017.22.31.30589
Garcia-Graells, 2018, Detection of plasmid-mediated colistin resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from food at retail in Belgium from 2012 to 2015, Foodborne Pathog Dis, 15, 114, 10.1089/fpd.2017.2329
Yang, 2016, Co-occurrence of mcr-1 and ESBL on a single plasmid in Salmonella enterica, J Antimicrob Chemother, 71, 2336, 10.1093/jac/dkw243
Li, 2016, Clonal spread of mcr-1 in PMQR-carrying ST34 Salmonella isolates from animals in China, Sci Rep, 6
Yi, 2017, mcr-1-harboring Salmonella enterica Serovar Typhimurium sequence type 34 in Pigs, China, Emerg Infect Dis, 23, 291, 10.3201/eid2302.161543
Ma, 2017, Prevalence, antimicrobial resistance, and relatedness of salmonella isolated from chickens and pigs on farms, abattoirs, and markets in Sichuan Province, China, Foodborne Pathog Dis, 14, 667, 10.1089/fpd.2016.2264
Cui, 2017, Distinct mechanisms of acquisition of mcr-1-bearing plasmid by Salmonella strains recovered from animals and food samples, Sci Rep, 7, 10.1038/s41598-017-01810-4
Wang, 2017, Complete genetic analysis of a Salmonella enterica serovar Indiana isolate accompanying four plasmids carrying mcr-1, ESBL and other resistance genes in China, Vet Microbiol, 210, 142, 10.1016/j.vetmic.2017.08.024
Hu, 2019, Salmonella harbouring the mcr-1 gene isolated from food in China between 2012 and 2016, J Antimicrob Chemother, 74, 826, 10.1093/jac/dky496
Chiou, 2017, Dissemination of mcr-1-carrying plasmids among colistin-resistant salmonella strains from humans and food-producing animals in Taiwan, Antimicrob Agents Chemother, 61, 10.1128/AAC.00338-17
Rau, 2018, Emergence of mcr-1 producing Salmonella enterica Serovar Typhimurium from retail meat: first detection in Brazil, Foodborne Pathog Dis, 15, 58, 10.1089/fpd.2017.2346
Moreno, 2019, First report of mcr-1-harboring Salmonella enterica serovar Schwarzengrund isolated from poultry meat in Brazil, Diagn Microbiol Infect Dis, 93, 376, 10.1016/j.diagmicrobio.2018.10.016
FAO, 2018
MacLennan, 2014, Vaccines against invasive Salmonella disease: current status and future directions, Hum Vaccin Immunother, 10, 1478, 10.4161/hv.29054
Sjölund-Karlsson, 2013, Occurrence of β-lactamase genes among non-typhi Salmonella enterica isolated from humans, food animals, and retail meats in the United States and Canada, Microb Drug Resist, 19, 191, 10.1089/mdr.2012.0178
Rehman, 2017, First detection of a fosfomycin resistance gene, fosA7, in Salmonella enterica serovar Heidelberg isolated from broiler chickens, Antimicrob Agents Chemother, 61, 10.1128/AAC.00410-17
Fernandes, 2017, Prevalence of extended-spectrum β-lactamases CTX-M-8 and CTX-M-2-producing Salmonella serotypes from clinical and nonhuman isolates in Brazil, Microb Drug Resist, 23, 580, 10.1089/mdr.2016.0085
Fitch, 2016, β-Lactam resistance genes: characterization, epidemiology, and first detection of blaCTX-M-1 and blaCTX-M-14 in Salmonella spp. Isolated from poultry in Brazil-Brazil ministry of agriculture’s pathogen reduction program, Microb Drug Resist, 22, 164, 10.1089/mdr.2015.0143
Pribul, 2017, Characteristics of quinolone resistance in Salmonella spp. Isolates from the food chain in Brazil, Front Microbiol, 8, 299, 10.3389/fmicb.2017.00299
Castellanos, 2018, Genomic characterization of extended-spectrum cephalosporin-resistant Salmonella enterica in the Colombian poultry chain, Front Microbiol, 9, 2431, 10.3389/fmicb.2018.02431
Almeida, 2018, Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing, PLoS One, 13, 10.1371/journal.pone.0201882
Moura, 2018, Virulent nontyphoidal Salmonella producing CTX-M and CMY-2 β-lactamases from livestock, food and human infection, Brazil, Virulence, 9, 281, 10.1080/21505594.2017.1279779
Jaja, 2019, Molecular characterisation of antibiotic-resistant Salmonella enterica isolates recovered from meat in South Africa, Acta Trop, 190, 129, 10.1016/j.actatropica.2018.11.003
Veldman, 2011, International collaborative study on the occurrence of plasmid-mediated quinolone resistance in Salmonella enterica and Escherichia coli isolated from animals, humans, food and the environment in 13 European countries, J Antimicrob Chemother, 66, 1278, 10.1093/jac/dkr084
Qiao, 2018, Prevalence of virulence genes in extended-spectrum β-lactamases (ESBLs)-producing Salmonella in retail raw chicken in China, J Food Sci, 83, 1048, 10.1111/1750-3841.14111
Kuang, 2018, Emerging high-level ciprofloxacin resistance and molecular basis of resistance in Salmonella enterica from humans, food and animals, Int J Food Microbiol, 280, 1, 10.1016/j.ijfoodmicro.2018.05.001