Comprehensive mapping of immune perturbations associated with severe COVID-19

Science immunology - Tập 5 Số 49 - 2020
Leticia Kuri-Cervantes1,2, M. Betina Pampena1,2, Wenzhao Meng3, Aaron M. Rosenfeld3, C.A.G. Ittner4, Ariel R. Weisman4, R.S. Agyekum4, Divij Mathew1,5, Amy E. Baxter1,5, Laura A. Vella6,2, Oliva Kuthuru5,2, Sokratis A. Apostolidis5,7,2, Luanne Bershaw5,2, Jeanette Dougherty5,2, Allison R. Greenplate5,2, Ajinkya Pattekar8,2, Justin Kim5,2, Nicholas Han5,2, Sigrid Gouma1,2, Madison E. Weirick1,2, Claudia P. Arevalo1,2, Marcus J. Bolton1,2, Eileen C. Goodwin1,2, Elizabeth M. Anderson1,2, Scott E. Hensley1,2, Tiffanie K. Jones4, Nilam S. Mangalmurti4,2, Eline T. Luning Prak3, E. John Wherry5,2,9, Nuala J. Meyer4, Michael R. Betts1,2
1Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
2Institute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
3Department of Pathology and Laboratory Medicine, Perelman School of Medicine, Philadelphia, PA 19104, USA.
4Division of Pulmonary, Allergy and Critical Care, Center for Translational Lung Biology, Lung Biology Institute, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
5Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania; Philadelphia, PA 19104, USA.
6Division of Infectious Diseases, Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
7Division of Rheumatology, Department of Medicine, Hospital of the University of Pennsylvania, Philadelphia, PA 19104, USA.
8Division of Gastroenterology, Department of Medicine, Hospital of the University of Pennsylvania, Philadelphia, PA 19104, USA.
9Parker Institute for Cancer Immunotherapy at the University of Pennsylvania, Philadelphia, PA 19104, USA.

Tóm tắt

Profound plasmablast expansion, innate cell modulation, and T cell activation are defining features of severe COVID-19.

Từ khóa


Tài liệu tham khảo

WHO Novel Coronavirus 2019 Reports (World Health Organization 2020) vol. 2020.

10.1056/NEJMoa2002032

10.1016/S0140-6736(20)30183-5

10.1016/S0140-6736(20)30211-7

10.1007/s00134-020-06028-z

10.1016/S2213-2600(20)30079-5

10.1001/jama.2020.1585

10.1172/JCI137244

10.1038/s41586-020-2196-x

10.1038/s41591-020-0819-2

10.1038/s41591-020-0944-y

10.1038/s41423-020-0447-2

10.1038/s41423-020-0401-3

A. J. Wilk A. Rustagi N. Q. Zhao J. Roque G. J. Martinez-Colon J. L. McKechnie G. T. Ivison T. Ranganath R. Vergara T. Hollis L. J. Simpson P. Grant A. Subramanian A. J. Rogers C. A. Blish A single-cell atlas of the peripheral immune response to severe COVID-19. medRxiv 2020.04.17.20069930 [ Preprint ]. 23 April 2020.

10.1111/all.14238

10.1097/CCM.0b013e31828a3d99

10.1164/rccm.202004-1163LE

ARDS Definition Task Force, V. M. Ranieri, G. D. Rubenfeld, B. T. Thompson, N. D. Ferguson, E. Caldwell, E. Fan, L. Camporota, A. S. Slutsky, Acute respiratory distress syndrome: The Berlin definition. JAMA 307, 2526–2533 (2012).

10.1378/chest.100.6.1619

10.1038/s41577-020-0353-y

10.1016/S2213-2600(20)30119-3

10.1038/s41392-020-0148-4

J. Liu Y. Liu P. Xiang L. Pu H. Xiong C. Li M. Zhang J. Tan Y. Xu R. Song M. Song L. Wang W. Zhang B. Han L. Yang X. Wang G. Zhou T. Zhang B. Li Y. Wang Z. Chen X. Wang Neutrophil-to-lymphocyte ratio predicts severe illness patients with 2019 novel coronavirus in the early stage. medRxiv 2020.02.10.20021584 [ Preprint ]. 12 February 2020.

10.1126/sciimmunol.aai8153

J. Zhao, Q. Yuan, H. Wang, W. Liu, X. Liao, Y. Su, X. Wang, J. Yuan, T. Li, J. Li, S. Qian, C. Hong, F. Wang, Y. Liu, Z. Wang, Q. He, Z. Li, B. He, T. Zhang, Y. Fu, S. Ge, L. Liu, J. Zhang, N. Xia, Z. Zhang, Antibody responses to SARS-CoV-2 in patients of novel coronavirus disease 2019. Clin. Infect. Dis. ciaa344 (2020).

10.1111/j.1365-2141.2005.05550.x

10.1002/eji.201545586

10.1371/journal.pone.0160853

10.3389/fimmu.2018.00486

10.1002/eji.1830271132

10.3389/fimmu.2016.00384

10.1016/j.chom.2020.04.009

10.1073/pnas.1502619112

10.1038/s41467-018-03243-7

D. Mathew J. R. Giles A. E. Baxter A. R. Greenplate J. E. Wu C. Alanio D. A. Oldridge L. Kuri-Cervantes M. B. Pampena K. D’Andrea S. Manne Z. Chen Y. J. Huang J. P. Reilly A. R. Weisman C. A. G. Ittner O. Kuthuru J. Dougherty K. Nzingha N. Han J. Kim A. Pattekar E. C. Goodwin E. M. Anderson M. E. Weirick S. Gouma C. P. Arevalo M. J. Bolton F. Chen S. F. Lacey S. E. Hensley S. Apostolidis A. C. Huang L. A. Vella; UPenn COVID Processing Unit M. R. Betts N. J. Meyer E. J. Wherry Deep immune profiling of COVID-19 patients reveals patient heterogeneity and distinct immunotypes with implications for therapeutic interventions. bioRxiv 2020.05.20.106401 [ Preprint ]. 23 May 2020.

Y. Jouan A. Guillon L. Gonzalez Y. Perez S. Ehrmann M. Ferreira T. Daix R. Jeannet B. Francois P.-F. Dequin M. Si-Tahar T. Baranek C. Paget Functional alteration of innate T cells in critically ill Covid-19 patients. medRxiv 2020.05.03.20089300 [ Preprint ]. 6 May 2020.

10.1093/ajcp/107.5.582

Y. Zuo, S. Yalavarthi, H. Shi, K. Gockman, M. Zuo, J. A. Madison, C. N. Blair, A. Weber, B. J. Barnes, M. Egeblad, R. J. Woods, Y. Kanthi, J. S. Knight, Neutrophil extracellular traps in COVID-19. JCI Insight 5, e138999 (2020).

10.4049/jimmunol.1701128

10.1083/jcb.201712085

10.1186/s13054-015-0778-z

10.1186/1471-2172-14-8

10.1371/journal.pone.0029430

10.1128/JVI.06075-11

M. Woodruff R. Ramonell K. Cashman D. Nguyen A. Ley S. Kyu A. Saini N. Haddad W. Chen J. C. Howell T. Ozturk S. Lee J. Estrada A. Morrison-Porter A. Derrico F. Anam H. Wu S. Le S. Jenks W. Hu F. E.-H. Lee I. Sanz Dominant extrafollicular B cell responses in severe COVID-19 disease correlate with robust viral-specific antibody production but poor clinical outcomes. medRxiv 2020.04.29.20083717 [ Preprint ]. 22 June 2020.

10.1098/rstb.2014.0237

10.1186/s12979-019-0163-x

10.3389/fimmu.2019.00483

W. Wen W. Su H. Tang W. Le X. Zhang Y. Zheng X. Liu L. Xie J. Li J. Ye X. Cui Y. Miao D. Wang J. Dong C.-L. Xiao W. Chen H. Wang Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing. medRxiv 2020.03.23.20039362 [ Preprint ]. 31 March 2020.

10.1016/j.immuni.2015.06.013

10.1016/j.immuni.2019.12.005

10.1126/science.1086907

10.1016/j.immuni.2004.12.011

10.1016/j.molimm.2006.06.025

10.1126/science.1111781

10.1128/JVI.78.19.10724-10737.2004

10.2807/1560-7917.ES.2020.25.11.2000266

10.1016/j.immuni.2020.04.023

10.3201/eid2607.200841

10.1016/j.immuni.2020.06.001

10.1038/s41591-020-0913-5

10.1016/j.clim.2013.12.001

10.1073/pnas.181347898

10.1097/QAD.0b013e32835bd1f0

10.1016/0952-7915(93)90051-S

10.1146/annurev.iy.13.040195.001015

10.1182/blood-2010-10-312942

10.4049/jimmunol.1202438

10.1111/sji.12339

10.1182/blood-2011-05-353821

10.4049/jimmunol.0901297

10.1172/jci.insight.96795

10.1016/j.virol.2014.12.033

10.1111/imr.12823

10.1111/imm.12992

10.1016/j.immuni.2015.08.012

10.1371/journal.ppat.1005805

10.1038/cddis.2016.55

10.1371/journal.ppat.1001051

10.1038/s41423-020-0498-4

P. Sarzi-Puttini, V. Giorgi, S. Sirotti, D. Marotto, S. Ardizzone, G. Rizzardini, S. Antinori, M. Galli, COVID-19, cytokines and immunosuppression: What can we learn from severe acute respiratory syndrome? Clin. Exp. Rheumatol. 38, 337–342 (2020).

10.1128/JVI.00090-07

10.1038/s41419-018-0917-y

X. H. Yao, T. Y. Li, Z. C. He, Y. F. Ping, H. W. Liu, S. C. Yu, H. M. Mou, L. H. Wang, H. R. Zhang, W. J. Fu, T. Luo, F. Liu, C. Chen, H. L. Xiao, H. T. Guo, S. Lin, D. F. Xiang, Y. Shi, Q. R. Li, X. Huang, Y. Cui, X. Z. Li, W. Tang, P. F. Pan, X. Q. Huang, Y. Q. Ding, X. W. Bian, [A pathological report of three COVID-19 cases by minimally invasive autopsies]. Zhonghua Bing Li Xue Za Zhi 49, 411–417 (2020).

10.1093/ajcp/aqaa062

10.1182/blood-2011-05-353789

10.1073/pnas.0914839107

10.1038/ncomms11653

10.1016/S2213-2600(16)00046-1

10.1371/journal.pone.0164489

10.1007/s00134-006-0204-8

D. D. Flannery, S. Gouma, M. B. Dhudasia, S. Mukhopadhyay, M. R. Pfeifer, E. C. Woodford, J. S. Gerber, C. P. Arevalo, M. J. Bolton, M. E. Weirick, E. C. Goodwin, E. M. Anderson, A. R. Greenplate, J. Kim, N. Han, A. Pattekar, J. Dougherty, O. Kuthuru, D. Mathew, A. E. Baxter, L. A. Vella, J. E. Weaver, A. Verma, R. Leite, J. S. Morris, D. J. Rader, M. A. Elovitz, E. J. Wherry, K. M. Puopolo, S. E. Hensley, SARS-CoV-2 seroprevalence among parturient women. Res. Square 10.21203/rs.3.rs-27402/v1 (2020).

10.1002/cpmc.100

10.1038/nbt.3942

10.1093/bioinformatics/btu138

10.3389/fimmu.2018.01472

10.1093/nar/gkt382

10.3389/fimmu.2018.02107

10.1038/nmeth.3364

V. I. Levenshtein, Binary codes capable of correcting deletions, insertions, and reversals. Sov. Phys. Dokl. 10, 707–710 (1966).