Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1
Tóm tắt
Từ khóa
Tài liệu tham khảo
Berglund, 1997, The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC, Cell, 89, 781, 10.1016/S0092-8674(00)80261-5
Blackshaw, 2004, Genomic analysis of mouse retinal development, PLoS Biol., 2, E247, 10.1371/journal.pbio.0020247
Blencowe, 2006, Alternative splicing: new insights from global analyses, Cell, 126, 37, 10.1016/j.cell.2006.06.023
Bond, 2009, Paraspeckles: nuclear bodies built on long noncoding RNA, J. Cell Biol., 186, 637, 10.1083/jcb.200906113
Burge, 1999, Splicing of Precursors to mRNAs by the Spliceosomes
Clemson, 2009, An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles, Mol. Cell, 33, 717, 10.1016/j.molcel.2009.01.026
Core, 2008, Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters, Science, 322, 1845, 10.1126/science.1162228
Das, 1999, Resolution of the mammalian E complex and the ATP-dependent spliceosomal complexes on native agarose mini-gels, RNA, 5, 1504, 10.1017/S1355838299991501
Davis, 2006, Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae, Proc. Natl Acad. Sci. USA, 103, 3262, 10.1073/pnas.0507783103
Gao, 2008, Human branch point consensus sequence is yUnAy, Nucleic Acids Res., 36, 2257, 10.1093/nar/gkn073
Gupta, 2010, Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis, Nature, 464, 1071, 10.1038/nature08975
Guru, 1997, A transcript map for the 2.8-Mb region containing the multiple endocrine neoplasia type 1 locus, Genome Res., 7, 725, 10.1101/gr.7.7.725
Guth, 2000, Kinetic role for mammalian SF1/BBP in spliceosome assembly and function after polypyrimidine tract recognition by U2AF, J. Biol. Chem., 275, 38059, 10.1074/jbc.M001483200
Hasegawa, 2010, The matrix protein hnRNP U is required for chromosomal localization of Xist RNA, Dev. Cell, 19, 369, 10.1016/j.devcel.2010.08.006
Hutchinson, 2007, A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains, BMC Genomics, 8, 39, 10.1186/1471-2164-8-39
Ishii, 2006, Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction, J. Hum. Genet., 51, 1087, 10.1007/s10038-006-0070-9
Ji, 2003, MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer, Oncogene, 22, 8031, 10.1038/sj.onc.1206928
Kapranov, 2007, RNA maps reveal new RNA classes and a possible function for pervasive transcription, Science, 316, 1484, 10.1126/science.1138341
Kramer, 1992, Purification of splicing factor SF1, a heat-stable protein that functions in the assembly of a presplicing complex, Mol. Cell. Biol., 12, 4545, 10.1128/MCB.12.10.4545
Lamond, 2003, Nuclear speckles: a model for nuclear organelles, Nat. Rev. Mol. Cell Biol., 4, 605, 10.1038/nrm1172
Langford, 1984, Point mutations identify the conserved, intron-contained TACTAAC box as an essential splicing signal sequence in yeast, Cell, 36, 645, 10.1016/0092-8674(84)90344-1
Mercer, 2009, Long non-coding RNAs: insights into functions, Nat. Rev. Genet., 10, 155, 10.1038/nrg2521
Nagano, 2009, Emerging similarities in epigenetic gene silencing by long noncoding RNAs, Mamm. Genome, 20, 557, 10.1007/s00335-009-9218-1
Nagano, 2008, The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin, Science, 322, 1717, 10.1126/science.1163802
Pandey, 2008, Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation, Mol. Cell, 32, 232, 10.1016/j.molcel.2008.08.022
Payer, 2008, X chromosome dosage compensation: how mammals keep the balance, Annu. Rev. Genet., 42, 733, 10.1146/annurev.genet.42.110807.091711
Prasanth, 2007, Eukaryotic regulatory RNAs: an answer to the ‘genome complexity’ conundrum, Genes Dev., 21, 11, 10.1101/gad.1484207
Preker, 2008, RNA exosome depletion reveals transcription upstream of active human promoters, Science, 322, 1851, 10.1126/science.1164096
Rapicavoli, 2010, The long noncoding RNA RNCR2 directs mouse retinal cell specification, BMC Dev. Biol., 10, 49, 10.1186/1471-213X-10-49
Rutz, 2000, A dual role for BBP/ScSF1 in nuclear pre-mRNA retention and splicing, EMBO J., 19, 1873, 10.1093/emboj/19.8.1873
Saha, 2006, Identification and characterization of a virus-inducible non-coding RNA in mouse brain, J. Gen. Virol., 87, 1991, 10.1099/vir.0.81768-0
Sasaki, 2009, MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles, Proc. Natl Acad. Sci. USA, 106, 2525, 10.1073/pnas.0807899106
Sato, 2007, Stable integration and conditional expression of electroporated transgenes in chicken embryos, Dev. Biol., 305, 616, 10.1016/j.ydbio.2007.01.043
Seila, 2008, Divergent transcription from active promoters, Science, 322, 1849, 10.1126/science.1162253
Seila, 2009, Divergent transcription: a new feature of active promoters, Cell Cycle, 8, 2557, 10.4161/cc.8.16.9305
Sheik Mohamed, 2010, Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells, RNA, 16, 324, 10.1261/rna.1441510
Sone, 2007, The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons, J. Cell Sci., 120, 2498, 10.1242/jcs.009357
Sunwoo, 2009, MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles, Genome Res., 19, 347, 10.1101/gr.087775.108
Tanackovic, 2005, Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo, Mol. Biol. Cell, 16, 1366, 10.1091/mbc.E04-11-1034
Tripathi, 2010, The Nuclear-retained non-coding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation, Mol. Cell, 39, 925, 10.1016/j.molcel.2010.08.011
Watakabe, 1993, The role of exon sequences in splice site selection, Genes Dev., 7, 407, 10.1101/gad.7.3.407
Weiner, 1994, Site-directed mutagenesis of double-stranded DNA by the polymerase chain reaction, Gene, 151, 119, 10.1016/0378-1119(94)90641-6
Wyers, 2005, Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase, Cell, 121, 725, 10.1016/j.cell.2005.04.030
Yoshimoto, 2009, Isolation and characterization of post-splicing lariat-intron complexes, Nucleic Acids Res., 37, 891, 10.1093/nar/gkn1002
Yu, 2008, Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA, Nature, 451, 202, 10.1038/nature06468
Zapp, 1989, Evidence for nuclear factors involved in recognition of 5′ splice sites, Nucleic Acids Res., 17, 2655, 10.1093/nar/17.7.2655