Comparison of leaf litter decomposition and microbial decomposer communities in fringe and riverine mangroves in French Guiana

Aerts R (1997) Climate, leaf litter chemistry and leaf litter decomposition in terrestrial ecosystems: a triangular relationship. Oikos 79:439–449. https://doi.org/10.2307/3546886 Agati G, Cerovic ZG, Pinelli P, Tattini M (2011) Light-induced accumulation of ortho-dihydroxylated flavonoids as non-destructively monitored by chlorophyll fluorescence excitation techniques. Environ Exp Bot 73:3–9. https://doi.org/10.1016/j.envexpbot.2010.10.002 Alongi DM (2002) Present state and future of the world’s mangrove forests. Environ Conserv 29:331–349. https://doi.org/10.1017/S0376892902000231 Alongi DM (2014) Carbon cycling and storage in mangrove forests. Annu Rev Mar Sci 6:195–219. https://doi.org/10.1146/annurev-marine-010213-135020 Alongi DM (2018) Impact of global change on nutrient dynamics in mangrove forests. Forests 9:596. https://doi.org/10.3390/f9100596 Anthony EJ, Brondizio ES, dos Santos VF, Gardel A, Besset M (2021) Sustainable management, conservation, and restoration of the Amazon River Delta and Amazon-influenced Guianas coast: A Review. Water 13:1371. https://doi.org/10.3390/w13101371 Arnaud M, Baird AJ, Morris PJ, Dang TH, Nguyen TT (2020) Sensitivity of mangrove soil organic matter decay to warming and sea level change. Glob Change Biol 26:1899–1907. https://doi.org/10.1111/gcb.14931 Aschenbroich A, Michaud E, Gilbert F, Fromard F, Alt A et al (2017) Bioturbation functional roles associated with mangrove development in French Guiana, South America. Hydrobiologia 794:179–202. https://doi.org/10.1007/s10750-017-3093-7 Ashton E, Hogarth P, Ormond R (1999) Breakdown of mangrove leaf litter in a managed mangrove forest in Peninsular Malaysia. Hydrobiologia 413:77–88. https://doi.org/10.1023/A:1003842910811 Aupic-Samain A, Santonja M, Chomel M, Pereira S, Quer E et al (2021) Soil biota response to experimental rainfall reduction depends on the dominant tree species in mature northern Mediterranean forests. Soil Biol Biochem 154:108122. https://doi.org/10.1016/j.soilbio.2020.108122 Ayres E, Steltzer H, Simmons BL, Simpson RT, Steinweg JM et al (2009) Home-field advantage accelerates leaf litter decomposition in forests. Soil Biol Biochem 41:606–610. https://doi.org/10.1016/j.soilbio.2008.12.022 Buyer JS, Sasser M (2012) High throughput phospholipid fatty acid analysis of soils. Appl Soil Ecol 61:127–130. https://doi.org/10.1016/j.apsoil.2012.06.005 Capdeville C, Pommier T, Gervaix J, Fromard F, Rols JL et al (2019) Mangrove facies drives resistance and resilience of sediment microbes exposed to anthropic disturbance. Front Microbiol 9:3337. https://doi.org/10.3389/fmicb.2018.03337 Chambers LG, Reddy KR, Osborne TZ (2011) Short-term response of carbon cycling to salinity pulses in a freshwater wetland. Soil Sci Soc Am J 75:2000–2007. https://doi.org/10.2136/sssaj2011.0026 Chambers LG, Osborne TZ, Reddy KR (2013) Effect of salinity-altering pulsing events on soil organic carbon loss along an intertidal wetland gradient: a laboratory experiment. Biogeochemistry 115:363–383. https://doi.org/10.1007/s10533-013-9841-5 Chapman SK, Feller IC (2011) Away-field advantage: mangrove seedlings grow best in litter from other mangrove species. Oikos 120:1880–1888. https://doi.org/10.1111/j.1600-0706.2011.19381.x Chomel M, Fernandez C, Bousquet-Mélou A, Gers C, Monnier Y et al (2014) Secondary metabolites of Pinus halepensis alter decomposer organisms and litter decomposition during afforestation of abandoned agricultural zones. J Ecol 102:411–424. https://doi.org/10.1111/1365-2745.12205 Chomel M, Guittonny-Larchevêque M, DesRochers A, Baldy V (2015) Home field advantage of litter decomposition in pure and mixed plantations under boreal climate. Ecosystems 18:1014–1028. https://doi.org/10.1007/s10021-015-9880-y Chomel M, Guittonny-Larchevêque M, Fernandez C, Gallet C, DesRochers A et al (2016) Plant secondary metabolites: a key driver of litter decomposition and soil nutrient cycling. J Ecol 104:1527–1541. https://doi.org/10.1111/1365-2745.12644 Cintrón G, Lugo A, Martinez R (1985) Structural and functional properties of mangrove forests. In: D’Arcy WG, Correa MD (eds) The Botany and Natural History of Panama, vol 10. Monographs in Systemic Botany, pp 53–66 Contreras LM, Fierro-Cabo A, Cintra-Buenrostro CE (2017) Early drivers of Black Mangrove (Avicennia germinans) leaf litter decomposition in the water column. Hydrobiologia 803:147–157. https://doi.org/10.1007/s10750-017-3167-6 Coûteaux MM, Bottner P, Berg B (1995) Litter decomposition, climate and litter quality. Trends Ecol Evol 10:63–66. https://doi.org/10.1016/S0169-5347(00)88978-8 Dick T, Osunkoya O (2000) Influence of tidal restriction floodgates on decomposition of mangrove litter. Aquat Bot 68:273–280. https://doi.org/10.1016/S0304-3770(00)00119-4 Diop B, Sanz N, Blanchard F, Walcker R, Gardel A (2019) The role of mangrove in the French Guiana shrimp fishery. J Environ Econ Policy 8:147–158. https://doi.org/10.1080/21606544.2018.1522601 Donato DC, Kauffman JB, Murdiyarso D, Kurnianto S, Stidham M et al (2011) Mangroves among the most carbon-rich forests in the tropics. Nat Geosci 4:293–297. https://doi.org/10.1038/ngeo1123 Elias DMO, Robinson S, Both S, Goodall T, Majalap-Lee N et al (2020) Soil microbial community and litter quality controls on decomposition across a tropical forest disturbance gradient. Front For Glob Change 3:81. https://doi.org/10.3389/ffgc.2020.00081 Ewel KC, Twilley RR, Ong JE (1998) Different kinds of mangrove forests provide different goods and services. Glob Ecol Biogeogr Lett 7:83–94. https://doi.org/10.2307/2997700 Feller IC, Lovelock CE, Berger U, McKee KL, Joye SB et al (2009) Biocomplexity in mangrove ecosystems. Annu Rev Mar Sci 2:395–417. https://doi.org/10.1146/annurev.marine.010908.163809 Fromard F, Puig H, Mougin E, Marty G, Betoulle JL et al (1998) Structure, above-ground biomass and dynamics of mangrove ecosystems: new data from French Guiana. Oecologia 115:39–53. https://doi.org/10.1007/s004420050489 Fromard F, Vega C, Proisy C (2004) Half a century of dynamic coastal change affecting mangrove shorelines of French Guiana. A case study based on remote sensing data analyses and field surveys. Mar Geol 208:265–280. https://doi.org/10.1016/j.margeo.2004.04.018 Frostegård A, Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22:59–65. https://doi.org/10.1007/BF00384433 Frostegård Å, Tunlid A, Bååth E (1993) Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl Environ Microbiol 59:3605–3617. https://doi.org/10.1128/aem.59.11.3605-3617.1993 Garland JL, Mills AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microbiol 57:2351–2359. https://doi.org/10.1128/AEM.57.8.2351-2359.1991 Gholz HL, Wedin DA, Smitherman SM, Harmon ME, Parton WJ (2000) Long-term dynamics of pine and hardwood litter in contrasting environments: toward a global model of decomposition. Glob Change Biol 6:751–765. https://doi.org/10.1046/j.1365-2486.2000.00349.x Gießelmann UC, Martins KG, Brändle M, Schädler M, Marques R et al (2010) Diversity and ecosystem functioning: Litter decomposition dynamics in the Atlantic Rainforest. Appl Soil Ecol 46:283–290. https://doi.org/10.1016/j.apsoil.2010.07.006 Gießelmann UC, Martins KG, Brändle M, Schädler M, Marques R et al (2011) Lack of home-field advantage in the decomposition of leaf litter in the Atlantic Rainforest of Brazil. Appl Soil Ecol 49:5–10. https://doi.org/10.1016/j.apsoil.2011.07.010 Gratiot N, Gardel A, Anthony EJ (2007) Trade-wind waves and mud dynamics on the French Guiana coast, South America: Input from ERA-40 wave data and field investigations. Mar Geol 236:15–26. https://doi.org/10.1016/j.margeo.2006.09.013 Guénon R, Day TA, Velazco-Ayuso S, Gros R (2017) Mixing of Aleppo pine and Holm oak litter increases biochemical diversity and alleviates N limitations of microbial activity. Soil Biol Biochem 105:216–226. https://doi.org/10.1016/j.soilbio.2016.11.023 Hättenschwiler S, Tiunov AV, Scheu S (2005) Biodiversity and litter decomposition in terrestrial ecosystems. Annu Rev Ecol Evol Syst 36:191–218. https://doi.org/10.1146/annurev.ecolsys.36.112904.151932 Holguin G, Vazquez P, Bashan Y (2001) The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview. Biol Fertil Soils 33:265–278. https://doi.org/10.1007/s003740000319 Imgraben S, Dittmann S (2008) Leaf litter dynamics and litter consumption in two temperate South Australian mangrove forests. J Sea Res 59:83–93. https://doi.org/10.1016/j.seares.2007.06.004 Kauffman JB, Adame MF, Arifanti VB, Schile-Beers LM, Bernardino AF et al (2020) Total ecosystem carbon stocks of mangroves across broad global environmental and physical gradients. Ecol Monogr 90:e01405. https://doi.org/10.1002/ecm.1405 Kristensen E, Bouillon S, Dittmar T, Marchand C (2008) Organic carbon dynamics in mangrove ecosystems: A review. Aquat Bot 89:201–219. https://doi.org/10.1016/j.aquabot.2007.12.005 Lecerf A, Chauvet E (2008) Intraspecific variability in leaf traits strongly affects alder leaf decomposition in a stream. Basic Appl Ecol 9:598–605. https://doi.org/10.1016/j.baae.2007.11.003 Lee SY (1989) The importance of sesarminae crabs Chiromanthes spp. and inundation frequency on mangrove (Kandelia candel (L.) Druce) leaf litter turnover in a Hong Kong tidal shrimp pond. J Exp Mar Biol Ecol 131:23–43. https://doi.org/10.1016/0022-0981(89)90009-9 Lewis DB, Brown JA, Jimenez KL (2014) Effects of flooding and warming on soil organic matter mineralization in Avicennia germinans mangrove forests and Juncus roemerianus salt marshes. Estuar Coast Shelf Sci 139:11–19. https://doi.org/10.1016/j.ecss.2013.12.032 Lovelock CE, Cahoon DR, Friess DA, Guntenspergen GR, Krauss KW et al (2015) The vulnerability of Indo-Pacific mangrove forests to sea-level rise. Nature 526:559–563. https://doi.org/10.1038/nature15538 Lugo AE, Snedaker SC (1974) The ecology of mangroves. Annu Rev Ecol Syst 5:39–64. https://doi.org/10.1146/annurev.es.05.110174.000351 Luis P, Saint-Genis G, Vallon L, Bourgeois C, Bruto M et al (2019) Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments. Environ Microbiol 21:1407–1424. https://doi.org/10.1111/1462-2920.14571 Marchand C, Lallier-Vergès E, Baltzer F (2003) The composition of sedimentary organic matter in relation to the dynamic features of a mangrove-fringed coast in French Guiana. Estuar Coast Shelf Sci 56:119–130. https://doi.org/10.1016/S0272-7714(02)00134-8 Marchand C, Baltzer F, Lallier-Vergès E, Albéric P (2004) Pore-water chemistry in mangrove sediments: relationship with species composition and developmental stages (French Guiana). Mar Geol 208:361–381. https://doi.org/10.1016/j.margeo.2004.04.015 Marchand C, Disnar JR, Lallier-Vergès E, Lottier N (2005) Early diagenesis of carbohydrates and lignin in mangrove sediments subject to variable redox conditions (French Guiana). Geochim Cosmochim Acta 69:131–142. https://doi.org/10.1016/j.gca.2004.06.016 Meentemeyer V (1978) Macroclimate and lignin control of litter decomposition rates. Ecology 59:465–472. https://doi.org/10.2307/1936576 Mfilinge P, Atta N, Tsuchiya M (2002) Nutrient dynamics and leaf litter decomposition in a subtropical mangrove forest at Oura Bay, Okinawa, Japan. Trees 16:172–180. https://doi.org/10.1007/s00468-001-0156-0 Morris EK, Caruso T, Buscot F, Fischer M, Hancock C et al (2014) Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories. Ecol Evol 4:3514–3524. https://doi.org/10.1002/ece3.1155 Musilova L, Ridl J, Polivkova M, Macek T, Uhlik O (2016) Effects of secondary plant metabolites on microbial populations: changes in community structure and metabolic activity in contaminated environments. Int J Mol Sci 17:1205. https://doi.org/10.3390/ijms17081205 Orseau S, Lesourd S, Huybrechts N, Gardel A (2017) Hydro-sedimentary processes of a shallow tropical estuary under Amazon influence. The Mahury Estuary. French Guiana. Estuar Coast Shelf Sci 189:252–266. https://doi.org/10.1016/j.ecss.2017.01.011 Palozzi JE, Lindo Z (2018) Are leaf litter and microbes team players? Interpreting home-field advantage decomposition dynamics. Soil Biol Biochem 124:189–198. https://doi.org/10.1016/j.soilbio.2018.06.018 Perez G, Aubert M, Decaëns T, Trap J, Chauvat M (2013) Home-field advantage: a matter of interaction between litter biochemistry and decomposer biota. Soil Biol Biochem 67:245–254. https://doi.org/10.1016/j.soilbio.2013.09.004 Peterson RA, Cavanaugh JE (2020) Ordered quantile normalization: a semiparametric transformation built for the cross-validation era. J Appl Stat 47:2312–2327. https://doi.org/10.1080/02664763.2019.1630372 Pradisty NA, Amir AA, Zimmer M (2021) Plant species- and stage-specific differences in microbial decay of mangrove leaf litter: the older the better? Oecologia 195:843–858. https://doi.org/10.1007/s00442-021-04865-3 Ray R, Thouzeau G, Walcker R, Vantrepotte V, Gleixner G et al (2020) Mangrove-derived organic and inorganic carbon exchanges between the Sinnamary estuarine system (French Guiana, South America) and Atlantic Ocean. J Geophys Res Biogeosciences 125:e2020JG005739. https://doi.org/10.1029/2020JG005739 Robertson AI (1988) Decomposition of mangrove leaf litter in tropical Australia. J Exp Mar Biol Ecol 116:235–247. https://doi.org/10.1016/0022-0981(88)90029-9 Rovai AS, Twilley RR, Castañeda-Moya E, Riul P, Cifuentes-Jara M et al (2018) Global controls on carbon storage in mangrove soils. Nat Clim Change 8:534–538. https://doi.org/10.1038/s41558-018-0162-5 Saiya-Cork KR, Sinsabaugh RL, Zak DR (2002) The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil. Soil Biol Biochem 34:1309–1315. https://doi.org/10.1016/S0038-0717(02)00074-3 Schnürer J, Rosswall T (1982) Fluorescein diacetate hydrolysis as a measure of total microbial activity in soil and litter. Appl Environ Microbiol 43:1256–1261. https://doi.org/10.1128/aem.43.6.1256-1261.1982 Swift MJ, Heal OW, Anderson JM, Anderson JM (1979) Decomposition in terrestrial ecosystems. University of California Press Talbot JM, Treseder KK (2012) Interactions among lignin, cellulose, and nitrogen drive litter chemistry–decay relationships. Ecology 93:345–354. https://doi.org/10.1890/11-0843.1 Uhlik O, Musilova L, Ridl J, Hroudova M, Vlcek C et al (2013) Plant secondary metabolite-induced shifts in bacterial community structure and degradative ability in contaminated soil. Appl Microbiol Biotechnol 97:9245–9256. https://doi.org/10.1007/s00253-012-4627-6 Valiela I, Teal JM, Allen SD, Van Etten R, Goehringer D et al (1985) Decomposition in salt marsh ecosystems: The phases and major factors affecting disappearance of above-ground organic matter. J Exp Mar Biol Ecol 89:29–54. https://doi.org/10.1016/0022-0981(85)90080-2 Veen GF(C), Freschet GT, Ordonez A, Wardle DA (2015) Litter quality and environmental controls of home-field advantage effects on litter decomposition. Oikos 124:187–195. https://doi.org/10.1111/oik.01374 Vinh TV, Allenbach M, Linh KTV, Marchand C (2020) Changes in leaf litter quality during its decomposition in a tropical planted mangrove forest (Can Gio, Vietnam). Front Environ Sci 8:10. https://doi.org/10.3389/fenvs.2020.00010 Walcker R, Anthony EJ, Cassou C, Aller RC, Gardel A et al (2015) Fluctuations in the extent of mangroves driven by multi-decadal changes in North Atlantic waves. J Biogeogr 42:2209–2219. https://doi.org/10.1111/jbi.12580 Wang Q, Zhong M, He T (2013) Home-field advantage of litter decomposition and nitrogen release in forest ecosystems. Biol Fertil Soils 49:427–434. https://doi.org/10.1007/s00374-012-0741-y Weston NB, Dixon R, Joye S (2006) Ramifications of increased salinity in tidal freshwater sediments: Geochemistry and microbial pathways of organic matter mineralization. J Geophys Res-Biogeosci 111:G01009. https://doi.org/10.1029/2005JG000071 Wu C, Zhang Z, Wang H, Huang G, Shu C et al (2019) Home-field advantage of CWD decomposition in subtropical forests varied by field sites. For Ecol Manag 444:127–137. https://doi.org/10.1016/j.foreco.2019.04.051 Zhang W, Wang C, Xue R, Wang L (2019) Effects of salinity on the soil microbial community and soil fertility. J Integr Agric 18:1360–1368. https://doi.org/10.1016/S2095-3119(18)62077-5 Zimmer M (2005) Phenol Oxidation. In: Graça MAS, Bärlocher F, Gessner MO (eds) Methods to study litter decomposition: A practical guide. Springer, Netherlands, Dordrecht, pp 279–282. https://doi.org/10.1007/1-4020-3466-0_38