Comparative profiling of microbial community of three economically important fishes reared in sea cages under tropical offshore environment
Tài liệu tham khảo
Arias, 2013, Predominant bacteria associated with red snapper from the northern Gulf of Mexico, J. Aquat. Anim. Health, 25, 281, 10.1080/08997659.2013.847872
Ayyappan
Collins, 2013, Effect of plant protein sources on growth rate in salmonids: meta-analysis of dietary inclusion of soybean, pea and canola/rapeseed meals and protein concentrates, Aquaculture, 400–401, 85, 10.1016/j.aquaculture.2013.03.006
Estruch, 2015, Impact of fishmeal replacement in diets for gilthead sea bream (Sparus aurata) on the gastrointestinal microbiota determined by pyrosequencing the 16S rRNA Gene, PLoS One, 10, 10.1371/journal.pone.0136389
Fao
Geraylou, 2013, Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing, FEMS Microbiol. Ecol., 86, 357, 10.1111/1574-6941.12169
Givens, 2015, Comparison of the gut microbiomes of 12 bony fish and 3 shark species, Mar. Ecol. Prog. Ser., 518, 209, 10.3354/meps11034
Hammer, 2005, PAST-PAlaeontological Statistics, ver. 1.35, Palaeontol. Electron., 4
Hovda, 2007, Molecular characterisation of the intestinal microbiota of farmed Atlantic salmon (Salmo salar L.), Aquaculture, 272, 581, 10.1016/j.aquaculture.2007.08.045
Irianto, 2002, Use of probiotics to control furunculosis in rainbow trout, Oncorhynchus mykiss (Walbaum), J. Fish Dis., 25, 333, 10.1046/j.1365-2761.2002.00375.x
Kapatral, 2003, Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586, Genome Res., 13, 1180, 10.1101/gr.566003
Kim, 2007, Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss), J. Appl. Microbiol., 102, 1654, 10.1111/j.1365-2672.2006.03185.x
Kormas, 2014, Dietary differences are reflected on the gut prokaryotic community structure of wild and commercially reared sea bream (Sparus aurata), Microbiology Open, 3, 718, 10.1002/mbo3.202
Larsen, 2014, Characterization of the gut microbiota of three commercially valuable warmwater fish species, J. Appl. Microbiol., 116, 1396, 10.1111/jam.12475
Liu, 2016, The gut microbiome.and degradation enzyme activity of wild freshwater fishes influenced by their.trophic levels, Sci. Report., 6, 24340, 10.1038/srep24340
Llewellyn, 2014, Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries, Front. Microbiol., 5, 207, 10.3389/fmicb.2014.00207
Magoč, 2011, FLASH: fast length adjustment of short reads to improve genome assemblies, Bioinformatics, 27, 2957, 10.1093/bioinformatics/btr507
Nayak, 2010, Role of gastrointestinal microbiota in fish, Aquac. Res., 41, 1553, 10.1111/j.1365-2109.2010.02546.x
Nazar
Pujalte, 2003, Carriage of potentially fish-pathogenic bacteria in Sparus aurata cultured in Mediterranean fish farms, Dis. Aquat. Org., 54, 119, 10.3354/dao054119
Remani
Ringø, 1999, Intestinal microflora of fish larvae and fry, Aquac. Res., 30, 73, 10.1046/j.1365-2109.1999.00302.x
Roeselers, 2011, Evidence for a core gut microbiota in the zebrafish, ISME J., 5, 1595, 10.1038/ismej.2011.38
Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microbiol., 75, 7537, 10.1128/AEM.01541-09
Thirunavukkarasu, 2009, Success in hatchery development of seabass and its potential for commercial cage culture in India, 71
Valdenegro-Vega, 2013, Culturable microbiota of ranched southern bluefin tuna (Thunnus maccoyii Castelnau), J. Appl. Microbiol., 115, 923, 10.1111/jam.12286
Vijayakumaran, 2009, Farming of spiny lobsters in sea cages in India, New Zealand J. Mar. Fresh., 43, 623, 10.1080/00288330909510028
Wong, 2013, Aquacultured rainbow trout (Oncorhynchus mykiss) possess a large core intestinal microbiota that is resistant to variation in diet and rearing density, Appl. Environ. Microbiol., 79, 4974, 10.1128/AEM.00924-13
Wu, 2015, Metatranscriptomic discovery of plant biomass-degrading capacity from grass carp intestinal microbiomes, FEMS Microbiol Ecol., 91, 10.1093/femsec/fiv107