Phân Tích So Sánh Chuỗi Gen Nhấn Mạnh Nền Tảng Của Mycoparasitism Là Lối Sống Tổ Tiên Của Genus Trichoderma

Genome Biology - 2011
Christian P. Kubicek1, Alfredo Herrera-Estrella2, Verena Seidl‐Seiboth1, Diego Martínez3, Irina S. Druzhinina1, Michael R. Thon4, Susanne Zeilinger1, Sergio Casas-Flores5, Benjamin A. Horwitz6, Prasun K. Mukherjee7, Mala Mukherjee6, László Kredics8, Luis David Alcaraz2, Andrea Aerts9, Zsuzsanna Antal8, Lea Atanasova1, Mayte Guadalupe Cervantes-Badillo5, Jean F. Challacombe9, Olga Chertkov9, Kevin McCluskey10, Fanny Coulpier11, Nandan Deshpande12, Hans von Döhren13, Daniel J. Ebbole14, Edgardo Ulises Esquivel-Naranjo2, Erzsébet Fekete15, Michel Flipphi16, Fabian Glaser6, Elida Yazmín Gómez-Rodríguez5, Sabine Gruber1, Cliff Han9, Bernard Henrissat17, Rosa Hermosa4, Miguel Ángel Hernández‐Oñate2, Levente Karaffa15, Idit Kosti6, Stéphane Le Crom11, Erika Lindquist9, Susan Lucas9, Mette Lübeck18, Peter Stephensen Lübeck18, Antoine Margeot19, Benjamin Metz1, Monica Misra9, Helena Nevalainen12, Markus Omann1, Nicolle H. Packer12, Giancarlo Perrone20, Edith Elena Uresti-Rivera5, Asaf Salamov9, Monika Schmoll1, Bernhard Schink1, Harris Shapiro9, Serenella A. Sukno4, Juan Antonio Tamayo-Ramos21, Doris Tisch1, Aric Wiest10, Heather H. Wilkinson14, Michael Zhang9, Pedro M. Coutinho17, Charles M. Kenerley14, Enrique Monte4, Scott E. Baker22, Igor V. Grigoriev9
1Area Gene Technology and Applied Biochemistry, Institute of Chemical Engineering Vienna University of Technology, Getreidemarkt 9, 1060, Vienna, Austria
2Laboratorio Nacional de Genómica para la Biodiversidad, Cinvestav Campus Guanajuato, Km. 9.6 Libramiento Norte, Carretera Irapuato-León, 36821, Irapuato, Mexico
3Broad Institute of MIT and Harvard, 301 Binney St, Cambridge, MA, 02142, USA
4Centro Hispanoluso de Investigaciones Agrarias (CIALE), Department of Microbiology and Genetics, University of Salamanca, Calle Del Duero, 12, Villamayor, 37185, Spain
5División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José, SLP., No. 2055, Colonia Lomas 4a Sección, San Luis Potosí, 78216, México
6Department of Biology, Technion - Israel Institute of Technology, Neve Shaanan Campus, Technion City, Haifa, 32000, Israel
7Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India
8Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, H-6726, Hungary
9DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
10School of Biological Sciences, University of Missouri- Kansas City, 5007 Rockhill Road, Kansas City, MO, 64110, USA
11Institut de Biologie de l'École normale supérieure (IBENS), Institut National de la Santé et de la Recherche Médicale U1024, Centre National de la Recherche Scientifique UMR8197, 46, rue d'Ulm, Paris, 75005, France
12Chemistry and Biomolecular Sciences, Macquarie University, Research Park Drive Building F7B, North Ryde, Sydney, NSW, 2109, Australia
13TU Berlin, Institut für Chemie, FG Biochemie und Molekulare Biologie OE2, Franklinstr. 29, 10587, Berlin, Germany
14Department of Plant Pathology and Microbiology, Texas A&M University, Building 0444, Nagle Street, College Station, TX, 77843, USA
15Department of Biochemical Engineering, Faculty of Science and Technology, University of Debrecen, Egyetem tér 1, Debrecen, H-4010, Hungary
16Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, Apartado de Correos 73, Burjassot, Valencia, E-46100, Spain
17Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS, Université de la Méditerranée, Case 932, 163 Avenue de Luminy, 13288, Marseille, 13288, France
18Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Lautrupvang 15, DK-2750, Ballerup, Denmark
19Biotechnology Department, IFP Energies nouvelles, 1-4 avenue de Bois Préau, Rueil-Malmaison, 92852, France
20Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via Amendola, 122/O, 70126 Bari, Italy
21Systems and Synthetic Biology, Fungal Systems Biology Group, Wageningen University, Dreijenplein 10, 6703 HB, Wageningen, The Netherlands
22Chemical and Biological Process Development Group, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99352, USA

Tóm tắt

Tóm tắtĐặt vấn đề

Mycoparasitism, một lối sống trong đó một loại nấm ký sinh vào một loại nấm khác, có ý nghĩa đặc biệt khi con mồi là một tác nhân gây bệnh thực vật, cung cấp một chiến lược cho kiểm soát sinh học sâu bệnh trong việc bảo vệ thực vật. Có lẽ, các tác nhân kiểm soát sinh học được nghiên cứu nhiều nhất là các loài thuộc chi Hypocrea/Trichoderma.

Kết quả

Trong nghiên cứu này, chúng tôi báo cáo một phân tích về các chuỗi gen của hai loài kiểm soát sinh học Trichoderma atroviride (teleomorph Hypocrea atroviridis) và Trichoderma virens (trước đây là Gliocladium virens, teleomorph Hypocrea virens), và so sánh với Trichoderma reesei (teleomorph Hypocrea jecorina). Ba loài Trichoderma này thể hiện sự bảo toàn đáng chú ý của trật tự gene (78 đến 96%), và thiếu các yếu tố di động hoạt động có thể do đột biến điểm gây ra bởi sự lặp lại. Một số họ gene đã được mở rộng ở hai loài mycoparasitic so với T. reesei hoặc các ascomycetes khác, và được đại diện quá mức trong các vùng gen không đồng vị. Phân tích hệ phylogenetic cho thấy T. reesei và T. virens có nguồn gốc từ T. atroviride. Các gene đặc trưng cho mycoparasitism do đó phát sinh trong một tổ tiên chung của Trichoderma nhưng sau đó đã bị mất ở T. reesei.

Kết luận

Dữ liệu cung cấp sự hiểu biết sâu sắc hơn về mycoparasitism, và do đó thúc đẩy việc phát triển các chủng kiểm soát sinh học cải tiến cho việc bảo vệ thực vật hiệu quả và thân thiện với môi trường.

Từ khóa


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