Common and well‐documented HLA alleles: 2012 update to the CWD catalogue

Wiley - Tập 81 Số 4 - Trang 194-203 - 2013
Steven J. Mack1, Pedro Cano2, Jill A. Hollenbach1, Juan He3, C K Hurley4, David W Middleton5, M. E. Moraes6, Shalini Pereira7, Jane Kempenich8, Elaine F. Reed9, Michelle Setterholm8, A.G. Smith7, Marcel G.J. Tilanus10, M. Torres6, Michael D. Varney11, C.E.M. Voorter10, Gottfried Fischer12, Katharina Fleischhauer13, Damian Goodridge14, William Klitz15, Alan Little16, Martin Maiers8, Steven G. E. Marsh17, Carlheinz Müller18, H. Noreen19, Erik H. Rozemuller20, Alicia Sanchez‐Mazas21, David Senitzer22, Elizabeth Trachtenberg1, Marcelo Fernández-Viña23
1Center for Genetics, Children’s Hospital Oakland Research Institute, Oakland, CA, USA
2Department of Laboratory Medicine, University of Texas M. D. Anderson Cancer Center, Houston, TX USA
3First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215006, People's Republic of China
4CW Bill Young Marrow Donor Recruitment and Research Program, Department of Oncology, Georgetown University, Washington DC, USA
5Transplant Immunology Laboratory, Royal Liverpool University Hospital, Liverpool, UK
6LIG Immunogenetic Laboratory, Sao Paulo, Brazil
7Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA
8Bioinformatics Research, National Marrow Donor Program, Minneapolis, MN, USA
9David Geffen School of Medicine, University of California, Los Angeles, CA, USA
10Department of Transplantation Immunology, Tissue Typing Laboratory, Maastricht University Medical Centre, Maastricht, The Netherlands
11Victorian Transplantation and Immunogenetics Service, Australian Red Cross Blood Service, Melbourne, VIC, Australia
12Division of Blood Group Serology, Medical University of Vienna, Vienna, Austria
13Unit of Molecular and Functional Immunogenetics, San Raffaele Scientific Institute, 20132 Milan, Italy
14Conexio Genomics, Perth, Australia
15School of Public Health, University of California, Berkeley, CA USA
16Gartnavel General Hospital, Histocompatibility and Immunogenetics Service, Glasgow, UK
17Anthony Nolan Research Institute and UCL Cancer Institute, Royal Free Campus, London, UK
18German National Bone Marrow Registry, Ulm, Germany
19University of Minnesota Hospital and Clinics, Fairview, Minneapolis, MN, USA
20GenDx B.V., Utrecht, the Netherlands
21Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution, Anthropology Unit, University of Geneva, Geneva, Switzerland
22HLA Laboratory, City of Hope, Duarte, CA, USA
23Department of Pathology, Stanford University, Stanford, CA, USA

Tóm tắt

Abstract

We have updated the catalogue of common and well‐documented (CWD) human leukocyte antigen (HLA) alleles to reflect current understanding of the prevalence of specific allele sequences. The original CWD catalogue designated 721 alleles at the HLA‐A, ‐B, ‐C, ‐DRB1, ‐DRB3/4/5, ‐DQA1, ‐DQB1, and ‐DPB1 loci in IMGT (IMmunoGeneTics)/HLA Database release 2.15.0 as being CWD. The updated CWD catalogue designates 1122 alleles at the HLA‐A, ‐B, ‐C, ‐DRB1, ‐DRB3/4/5, ‐DQA1, ‐DQB1, ‐DPA1 and ‐DPB1 loci as being CWD, and represents 14.3% of the HLA alleles in IMGT/HLA Database release 3.9.0. In particular, we identified 415 of these alleles as being ‘common’ (having known frequencies) and 707 as being ‘well‐documented’ on the basis of ~140,000 sequence‐based typing observations and available HLA haplotype data. Using these allele prevalence data, we have also assigned CWD status to specific G and P designations. We identified 147/151 G groups and 290/415 P groups as being CWD. The CWD catalogue will be updated on a regular basis moving forward, and will incorporate changes to the IMGT/HLA Database as well as empirical data from the histocompatibility and immunogenetics community. This version 2.0.0 of the CWD catalogue is available online at cwd.immunogenomics.org, and will be integrated into the Allele Frequencies Net Database, the IMGT/HLA Database and National Marrow Donor Program's bioinformatics web pages.

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Wiley

Tập 81 Số 4

194-203

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