Co-localization of constituents of the dengue virus translation and replication machinery with amphisomes

Abramoff, 2004, Image processing with ImageJ, Biophotonics International, 11, 36

Allison, 1995, Oligomeric rearrangement of tick-borne encephalitis virus envelope proteins induced by an acidic pH, J Virol, 69, 695, 10.1128/JVI.69.2.695-700.1995

Bampton, 2005, The dynamics of autophagy visualized in live cells: from autophagosome formation to fusion with endo/lysosomes, Autophagy, 1, 23, 10.4161/auto.1.1.1495

Boulton, 1976, Replication of the flavivirus Kunjin: proteins, glycoproteins, and maturation associated with cell membranes, Virology, 69, 416, 10.1016/0042-6822(76)90473-6

Cahour, 1992, Cleavage of the dengue virus polyprotein at the NS3/NS4A and NS4B/NS5 junctions is mediated by viral protease NS2B–NS3, whereas NS4A/NS4B may be processed by a cellular protease, J Virol, 66, 1535, 10.1128/JVI.66.3.1535-1542.1992

Chang, 1997, Molecular biology of dengue viruses. In Dengue and Dengue Hemorrhagic Fever, 175

Clyde, 2006, Recent advances in deciphering viral and host determinants of dengue virus replication and pathogenesis, J Virol, 80, 11418, 10.1128/JVI.01257-06

Dunn, 1990a, Studies on the mechanisms of autophagy: formation of the autophagic vacuole, J Cell Biol, 110, 1923, 10.1083/jcb.110.6.1923

Dunn, 1990b, Studies on the mechanisms of autophagy: maturation of the autophagic vacuole, J Cell Biol, 110, 1935, 10.1083/jcb.110.6.1935

French, 2008, Colocalization of fluorescent markers in confocal microscope images of plant cells, Nat Protoc, 3, 619, 10.1038/nprot.2008.31

Gordon, 1988, Prelysosomal convergence of autophagic and endocytic pathways, Biochem Biophys Res Commun, 151, 40, 10.1016/0006-291X(88)90556-6

Gordon, 1992, Prelysosomal and lysosomal connections between autophagy and endocytosis, Biochem J, 283, 361, 10.1042/bj2830361

Guzman, 2002, Dengue: an update, Lancet Infect Dis, 2, 33, 10.1016/S1473-3099(01)00171-2

Hanada, 2007, The Atg12–Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy, J Biol Chem, 282, 37298, 10.1074/jbc.C700195200

Heinz, 2004, The entry machinery of flaviviruses, Arch Virol Suppl, 18, 133

Jackson, 2005, Subversion of cellular autophagosomal machinery by RNA viruses, PLoS Biol, 3, e156, 10.1371/journal.pbio.0030156

Kabeya, 2000, LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing, EMBO J, 19, 5720, 10.1093/emboj/19.21.5720

Kihara, 2001, Beclin–phosphatidylinositol 3-kinase complex functions at the trans -Golgi network, EMBO Rep, 2, 330, 10.1093/embo-reports/kve061

Kim, 2002, Convergence of multiple autophagy and cytoplasm to vacuole targeting components to a perivacuolar membrane compartment prior to de novo vesicle formation, J Biol Chem, 277, 763, 10.1074/jbc.M109134200

Kimura, 2007, Dissection of the autophagosome maturation process by a novel reporter protein, tandem fluorescent-tagged LC3, Autophagy, 3, 452, 10.4161/auto.4451

Krishnan, 2007, Rab 5 is required for the cellular entry of dengue and West Nile viruses, J Virol, 81, 4881, 10.1128/JVI.02210-06

Lee, 2008, Autophagy and antiviral immunity, Curr Opin Immunol, 20, 23, 10.1016/j.coi.2008.01.001

Lee, 2008, Autophagic machinery activated by dengue virus enhances virus replication, Virology, 374, 240, 10.1016/j.virol.2008.02.016

Lerena, 2008, Autophagy: for better or for worse, in good times or in bad times, Curr Mol Med, 8, 92, 10.2174/156652408783769634

Levine, 2004, Development by self-digestion: molecular mechanisms and biological functions of autophagy, Dev Cell, 6, 463, 10.1016/S1534-5807(04)00099-1

Mackenzie, 1996, Immunolocalization of the dengue virus nonstructural glycoprotein NS1 suggests a role in viral RNA replication, Virology, 220, 232, 10.1006/viro.1996.0307

Malavige, 2004, Dengue viral infections, Postgrad Med J, 80, 588, 10.1136/pgmj.2004.019638

Meijer, 2006, Signalling and autophagy regulation in health, aging and disease, Mol Aspects Med, 27, 411, 10.1016/j.mam.2006.08.002

Miller, 2008, Modification of intracellular membrane structures for virus replication, Nat Rev Microbiol, 6, 363, 10.1038/nrmicro1890

Mizushima, 1998, A protein conjugation system essential for autophagy, Nature, 395, 395, 10.1038/26506

Mizushima, 2002, Mouse Apg10 as an Apg12-conjugating enzyme: analysis by the conjugation-mediated yeast two-hybrid method, FEBS Lett, 532, 450, 10.1016/S0014-5793(02)03739-0

Mizushima, 2008, Autophagy fights disease through cellular self-digestion, Nature, 451, 1069, 10.1038/nature06639

Modis, 2004, Structure of the dengue virus envelope protein after membrane fusion, Nature, 427, 313, 10.1038/nature02165

Mukhopadhyay, 2005, A structural perspective of the flavivirus life cycle, Nat Rev Microbiol, 3, 13, 10.1038/nrmicro1067

Noda, 1998, Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast, J Biol Chem, 273, 3963, 10.1074/jbc.273.7.3963

Ohsumi, 2001, Molecular dissection of autophagy: two ubiquitin-like systems, Nat Rev Mol Cell Biol, 2, 211, 10.1038/35056522

Pedersen, 1999, Open reading frame 1a-encoded subunits of the arterivirus replicase induce endoplasmic reticulum-derived double-membrane vesicles which carry the viral replication complex, J Virol, 73, 2016, 10.1128/JVI.73.3.2016-2026.1999

Puttikhunt, 2003, Production of anti-dengue NS1 monoclonal antibodies by DNA immunization, J Virol Methods, 109, 55, 10.1016/S0166-0934(03)00045-4

Salonen, 2005, Viral RNA replication in association with cellular membranes, Curr Top Microbiol Immunol, 285, 139

Seglen, 1982, 3-Methyladenine: specific inhibitor of autophagic/lysosomal protein degradation in isolated rat hepatocytes, Proc Natl Acad Sci U S A, 79, 1889, 10.1073/pnas.79.6.1889

Sithisarn, 2003, Behavior of the dengue virus in solution, J Med Virol, 71, 532, 10.1002/jmv.10520

Thepparit, 2004, Serotype-specific entry of dengue virus into liver cells: identification of the 37-kilodalton/67-kilodalton high-affinity laminin receptor as a dengue virus serotype 1 receptor, J Virol, 78, 12647, 10.1128/JVI.78.22.12647-12656.2004

van der Schaar, 2007, Characterization of the early events in dengue virus cell entry by biochemical assays and single-virus tracking, J Virol, 81, 12019, 10.1128/JVI.00300-07

Weber, 2006, Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses, J Virol, 80, 5059, 10.1128/JVI.80.10.5059-5064.2006

Xie, 2007, Autophagosome formation: core machinery and adaptations, Nat Cell Biol, 9, 1102, 10.1038/ncb1007-1102

Yoshii, 2004, Single point mutation in tick-borne encephalitis virus prM protein induces a reduction of virus particle secretion, J Gen Virol, 85, 3049, 10.1099/vir.0.80169-0