Đặc điểm của các gen rRNA hạt nhân (18S, 5.8S, 28S và 5S) và ti thể (12S và 16S) của Apis mellifera (Insecta: Hymenoptera): cấu trúc, tổ chức và các yếu tố lùi lại chuyển vị
Tóm tắt
Như một bản thảo kèm theo để phát hành bộ gen ong mật, chúng tôi báo cáo toàn bộ trình tự của các gen mã hóa RNA ribosom hạt nhân (18S, 5.8S, 28S và 5S) và ti thể (12S và 16S) (rRNA) và các vùng chuyển tiếp được phiên mã nội bộ và bên ngoài liên quan đến
Từ khóa
Tài liệu tham khảo
Burke W.D., 1993, Sequence relationship of retrotransposable elements R1 and R2 within and between divergent insect species, Mol Biol Evol, 10, 163
Chiang T.‐Y., 1998, Complete nucleotide sequence of the intergenic spacer between 25S and 17S rDNA in Miscanthus sinensis var. glaber, Bot Bull Acad Sin, 39, 241
Clark. A.G., 1992, Sequencing errors and molecular evolutionary analysis, Mol Biol Evol, 9, 744
Cooper A.(1994)Molecular evolutionary studies of New Zealand birds.PhD Thesis Victoria University of Wellington New Zealand.
Crozier R.H., 1989, The CO‐I and CO‐II region of honeybee mitochondrial DNA: evidence for variation in insect mitochondrial evolutionary rates, Mol Biol Evol, 4, 399
Eickbush D.G., 1995, R1 and R2 retrotransposable elements of Drosophila evolve at rates similar to those of nuclear genes, Genetics, 139, 685, 10.1093/genetics/139.2.685
Friedrich M., 1997, Evolution and phylogeny of the Diptera: a molecular phylogenetic analysis using 28S rDNA sequences, Syst Biol, 46, 674, 10.1093/sysbio/46.4.674
Gerbi S.A., 1996, Ribosomal RNA: Structure, Evolution, Processing, and Function in Protein Synthesis, 71
Gutell R.R., 1996, Ribosomal RNA: Structure, Evolution, Processing and Function in Protein Synthesis, 111
Hancock J.M., 1988, Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs, Mol Biol Evol, 5, 377
Hancock J.M., 1988, Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster, Mol Biol Evol, 5, 393
Hickson R.E.(1993)Evolutionary tails from the South Pacific. Being a wondrous and exciting account of investigations into the histories of New Zealand skinks and in which it is shown that things are not what they seem.PhD Thesis Massey University New Zealand.
Hixson J.E., 1986, A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications, Mol Biol Evol, 3, 1
Levinson G., 1987, Slipped‐strand mispairing: a major mechanism for DNA sequence evolution, Mol Biol Evol, 4, 203
Mathews D.H., 1997, Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element, RNA, 3, 1
Neefs J.‐M., 1990, A proposal for the secondary structure of a variable area of eukaryotic small ribosomal subunit RNA involving the existence of a pseudoknot, Nucleic Acids Res, 18, 5695, 10.1093/nar/18.19.5695
Neefs J.‐M., 1990, Compilation of small ribosomal subunit RNA sequences, Nucleic Acids Res, 18, 2237, 10.1093/nar/18.suppl.2237
Page R.D.M.(2001)On the dangers of aligning RNA sequences using ‘conserved’ motifs. Technical reports in taxonomy.Available at:http://taxonomy.zoology.gla.ac.uk/publications/tech‐reports/index.html.
Pepera O.P., 1998, Species‐specific repeat units in the intergenic spacer of the ribosomal RNA cistron of Anopheles aquasalis Curry, Am J Trop Med Hyg, 59, 673, 10.4269/ajtmh.1998.59.673
Perez‐Gonzalez C.E., 2001, Dynamics of R1 and R2 elements in the rDNA locus of Drosophila, Genetics, 158, 1557, 10.1093/genetics/158.4.1557
Perez‐Gonzalez C.E., 2002, Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster, Genetics, 162, 799, 10.1093/genetics/162.2.799
Rambaut A.(1996)Se‐Al: Sequence Alignment Editor.Available athttp://evolve.zoo.ox.ac.uk/.
Simon C., 1991, Exploiting Conserved and Variable Regions of the Mitochondrial Genome of Animals Via Direct Sequencing from Amplified DNA, 33
Simon C. Paabo S. Kocher T.andWilson A.C.(1990) Evolution of the mitochondrial ribosomal RNA in insects as shown by the polymerase chain reaction. In:Molecular Evolution(Cleggs M.andO’brien S. eds.) pp.235–244.UCLA Symposia on Molecular and Cellular Biology New Series Vol.122.Liss New York.
Sullivan J., 1995, Among‐site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents, Mol Biol Evol, 12, 988
Tautz D., 1988, Complete sequences of the rRNA genes of Drosophila melanogaster, Mol Biol Evol, 5, 366
The Honey Bee Genome Sequencing Consortium, 2006, Insights into social insects from the genome of the honeybee Apis mellifera, Nature, 10.1038/nature05260
Thomas W.K., 1989, Shifting constraints on tRNA genes during mitochondrial DNA evolution in animals, New Biologist, 1, 93
Vawter L., 1993, Rates and patterns of base change in the SSU ribosomal RNA gene, Genetics, 134, 597, 10.1093/genetics/134.2.597
Whang I.‐J., 2002, Intragenomic length variation of the ribosomal DNA intergenic spacer in a malaria vector, Anopheles sinensis, Mol Cells, 14, 158, 10.1016/S1016-8478(23)15087-4
Whiting M.F., 1997, The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology, Syst Biol, 46, 1
Woese C.R., 1993, The RNA World., 91
Yoshizawa K., 2005, Aligned 18S for Zoraptera (Insecta): phylogenetic position and molecular evolution, Mol Phylogenet Evol, 37, 572, 10.1016/j.ympev.2005.05.008